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Unknown (13729)
Proteomics (141)
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Models (11)
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Multiomics (1)

Organisms

Homo sapiens (191)
Mus musculus (46)
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Drosophila melanogaster (4)
Saccharomyces cerevisiae (4)
Escherichia coli (4)
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Organisms

Homo sapiens (15)
Mus musculus (11)
Streptococcus pyogenes (2)
Escherichia coli str. K-12 substr. W3110 (1)
Macaca mulatta (1)
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Caenorhabditis elegans (1)
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Repository

biostudies-arrayexpress (131)
pride (79)
EGA (63)
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dbGaP (19)
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Tissue

Cell culture (20)
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Disease

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Not Available (1)
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Carcinoma (1)
Cardiomyopathy (1)
Diabetic retinopathy (1)
Gallbladder carcinoma (1)
Human immunodeficiency virus infectious disease (1)
Huntington Disease (1)
Hypertrophic cardiomyopathy (1)
Leishmaniasis (1)

Technology Type

Mass Spectrometry (86)
Shotgun proteomics (51)
Bottom-up proteomics (14)
ESI (7)
Data-dependent acquisition (7)
Affinity purification coupled with mass spectrometry proteomics (6)
Data-independent acquisition (5)
Mass spectrometry (4)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Gel-based experiment (3)
Mass spectrometry assay (2)
Top-down proteomics (2)
Affymetrix OncoScan FFPE Express (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)

Instrument Platform

Q Exactive (13)
TimsTOF fleX (11)
Orbitrap Fusion Lumos (9)
Q Exactive Plus (9)
TimsTOF SCP (7)
LTQ Orbitrap Elite (5)
LTQ Orbitrap Velos (4)
ZenoTOF 7600 (3)
Illumina Genome Analyzer IIx (2)
Illumina HiSeq 2500 (2)
Illumina HiSeq 4000 (2)
LTQ Velos ion-trap mass spectrometer (ThermoFisher) (2)
Orbitrap Eclipse (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
G2505. Agilent’s Scan Control software v. A.7.01 and Feature Extraction. (1)
GenePix 4000B [Axon Instruments] (1)
GenePix 4000B (1)
Illumina HiSeq 2000 (1)
Instrument (1)
Exactive (1)
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Orbitrap Fusion ETD (1)
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Q Exactive HF-X (1)
Thermo Scientific Orbitrap Velos 2 (1)
TripleTOF 6600 (1)
Direct infusion MS - positive (1)
Gas Chromatography MS - positive (1)

Publication Date

2024 (23)
2013 (22)
2023 (21)
2022 (21)
2016 (18)
2015 (18)
2008 (16)
2009 (14)
2021 (13)
2012 (13)
2017 (12)
2010 (12)
2018 (11)
2011 (11)
2025 (11)
2005 (10)
2014 (10)
2026 (10)
2020 (9)
2019 (6)
2007 (6)
2006 (1)
2004 (1)

UNIPROT ID/AC

A4QPA9 (1)
P00533 (1)
P01112 (1)
P01133 (1)
P04049 (1)
P13773 (1)
P20936 (1)
P28482 (1)
P62993 (1)
P98077 (1)
Q01386 (1)
Q02750 (1)
Q07889 (1)
Q23917 (1)
Q54QB1 (1)
Q9BZL4 (1)

CHEBI ID

CHEBI:16750 (4)
CHEBI:116314 (3)
CHEBI:15428 (3)
CHEBI:16027 (3)
CHEBI:16335 (3)
CHEBI:16610 (3)
CHEBI:16704 (3)
CHEBI:16737 (3)
CHEBI:16958 (3)
CHEBI:17268 (3)
CHEBI:17368 (3)
CHEBI:17568 (3)
CHEBI:17596 (3)
CHEBI:17821 (3)
CHEBI:17822 (3)
CHEBI:30769 (3)
CHEBI:4170 (3)
CHEBI:6650 (3)
CHEBI:133077 (2)
CHEBI:133144 (2)
CHEBI:15035 (2)
CHEBI:15318 (2)
CHEBI:15354 (2)
CHEBI:15676 (2)
CHEBI:15746 (2)
CHEBI:15859 (2)
CHEBI:15996 (1)
CHEBI:17489 (1)
CHEBI:17552 (1)
CHEBI:29108 (1)

Metabolite Name

Uracil (3)
Adenosine (2)
Adenosine (2)
Choline (2)
Cinobufagin (2)
Creatine (2)
Glycerophosphocholine (2)
Guanine (2)
Indole (2)
L-Histidine (2)
L-Proline (2)
L-Valine (2)
Levofloxacin (2)
Lubiprostone (2)
Phytosphingosine (2)
Spermidine (2)
Sphingosine (2)
Xestoaminol C (2)
(+/-)-(Z)-2-(5-Tetradecenyl)Cyclobutanone (1)
(+/-)-Pelletierine (1)
(+/-)-Propionylcarnitine (1)
(-)-12-hydroxy-9,10-dihydrojasmonic acid (1)
(-)-2,7-Dolabelladiene-6beta,10alpha,18-triol (1)
(-)-8-hydroxy-11E,17-octadecadien-9-ynoic acid (1)
(-)-Alpha-Cedrene (1)
(-)-Cladielline (1)
(-)-Corey Lactone Diol (1)
(-)-Dilophol (1)
(-)-erythro-Anethole glycol 1-glucoside (1)
(-)-erythro-Anethole glycol 2-glucoside (1)

First Public Date

2025 (10)
2024 (5)
2021 (5)
2020 (5)
2014 (4)
2026 (3)
2022 (3)
2018 (1)
2017 (1)
2015 (1)

Modelling Approach

Ordinary differential equation model (11)

Lab affiliation

Johns Hopkins University (5)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205 USA (4)
733 N. Broadway Miller Research Building room 527 Johns Hopkins University Baltimore, MD 21205 (2)
Institute of Genetic Medicine, Johns Hopkins University School of Medicine (2)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205 USA (2)
The Wilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287 USA (2)
Wilmer Eye Institute, Smith Building, M015, 400 N. Broadway, Baltimore, MD 21287 (2)
1Department of Ophthalmology, Johns Hopkins University School of Medicine, Baltimore, MD (1)
Aikaterini Kontrogianni-Konstantopoulos, Ph.D. Professor of Biochemistry and Molecular Biology Director, Interdisciplinary Training Program in Muscle Biology Marlene and Stewart Greenebaum Comprehensive Cancer Center University of Maryland School of Medicine 108 N. Greene Street, 215A Baltimore, MD 21201 (1)
Associate Prosfessor, Johns Hopkins University, Department of Pathology Baltimore USA (1)
BioBix, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, Ghent, Belgium (1)
Center for Biologics Evaluation and Research (CBER), U.S. Food and Drug Administration (FDA) (1)
Chemical & Biomolecular Engineering, Johns Hopkins University (1)
Clinical Chemistry Division, Department of Pathology, The Johns Hopkins University, Baltimore, MD, USA (1)
Deparment of Chemistry, Syracuse University (1)
Department of Biological Chemistry The Johns Hopkins School of Medicine Baltimore, MD, 21205, USA (1)
Department of Biotechnology, Graduate School of Engineering, The University of Osaka, Japan (1)
Department of Microbiology and Immunology, University of Michigan, Ann Arbor, MI, USA (1)
Department of Neurology, Johns Hopkins University School of Medicine (1)
Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, MD, USA; Neuroregeneration and Stem Cell Programs, Institute for Cell Engineering, Johns Hopkins University School of Medicine, Baltimore, MD, USA. (1)
Department of Neurology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA (1)
Department of Oncology and Diagnostic Sciences, University of Maryland School of Dentistry, Baltimore MD (1)
Department of Oncology and Diagnostics Sciences University of Maryland School of Dentistry Baltimore, MD (1)
Department of Oncology, Sidney Kimmel Comprehensive Cancer Center and Department of Pediatrics, Johns Hopkins University School of Medicine, Baltimore, MD, USA (1)
Department of Oncology, The Johns Hopkins University School of Medicine's Sidney Kimmel Comprehensive Cancer Center, Baltimore, MD, USA (1)
Department of Pathology, Johns Hopkins University School of Medicine (1)
Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, United States (1)
Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA 21287 (1)
Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA. (1)
Department of Pathology, School of Medicine, Johns Hopkins University (1)

IsPrivate

False (11)

Classification

bacteria (4)

Modification

2x(15)N labeled L-lysine (4)
4x(15)N labeled L-arginine (4)
4 (2)
Not available (1)

Study type

Transcription profiling by array (81)
Comparative genomic hybridization by array (10)
RNA-seq of coding RNA (9)
Methylation profiling by array (7)
RNA-seq of non coding RNA (3)
Transcription profiling by SAGE (2)
Transcription profiling by RT-PCR (2)
MicroRNA profiling by high throughput sequencing (2)
ChIP-seq (2)
Methylation profiling by high throughput sequencing (2)
Unknown experiment type (1)
Animal - One-color microarray (1)
ChIP-chip by tiling array (1)
Human - High-throughput sequencing (1)
Cell line - One-color microarray (1)
ChIP-chip by array (1)
Other (1)
MicroRNA profiling by array (1)
DNA-seq (1)
Proteomic profiling by array (1)

Release Date

2022 (1428)
2021 (1356)
2023 (1291)
2025 (1262)
2024 (1221)
2020 (1110)
2019 (943)
2018 (872)
2017 (764)
2016 (704)
2015 (617)
2014 (522)
2013 (348)
2011 (279)
2012 (269)
2010 (196)
2026 (174)
2009 (164)
2008 (123)
2007 (56)
2006 (43)
2004 (26)
2005 (25)
2003 (18)
2002 (15)
2000 (13)
2001 (8)
1999 (8)
1998 (3)
1997 (2)

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Popliteal adipocytes from mice infected with L. monocytogenes

PRJNA721781 | ENA

Exploring potentially alternative non-canonical DNA duplex structures through simulation.

Not available

S-EPMC7508566 | biostudies-literature

HnRNP L represses cryptic exons.

Not available

S-EPMC5959245 | biostudies-literature

Popliteal adopose tissue tromal vascular fraction cells from mice infected with L. monocytogenes

PRJNA719124 | ENA

A novel protein coding potential of long intergenic non-coding RNAs (lincRNAs) in the kinetoplastid protozoan parasite Leishmania major

Leishmania major is a kinetoplastid protozoan parasite which causes the debilitating infectious disease cutaneous leishmaniasis (CL). This disease results in scars and disfiguration of the infected individuals. The L. major genome was the first leishmanial genome to be sequenced in 2005 and this stu...

ORGANISM(S): Leishmania major

2016-05-11 | PXD002465 | Pride

Dietary L-3,4-dihydroxyphenylalanine (L-DOPA) augments cuticular melanization in Anopheles mosquitos reducing their lifespan and malaria burden.

Not available

S-EPMC12391390 | biostudies-literature

Proteomic analysis of glycosomes from Leishmania donovani

Leishmania donovani is a kinetoplastid protozoan which causes Kala-azar or visceral leishmaniasis.Leishmania possess glycosomes that are unique and specialized subcellular microbody organelles. Glycosomes are known to harbor most peroxisomal enzymes and in addition they also possess glycolytic enzym...

ORGANISM(S): Leishmania donovani

2015-03-25 | PXD000724 | Pride

Leishmaniasis Subcellular organelle Kinetoplastid

Association of a Care Coordination Model With Health Care Costs and Utilization: The Johns Hopkins Community Health Partnership (J-CHiP).

Not available

S-EPMC6324376 | biostudies-literature

CTH exacerbates Helicobacter pylori immunopathogenesis by promoting macrophage metabolic remodeling and activation

Macrophages play a crucial role in the inflammatory response to the human stomach pathogen Helicobacter pylori, which infects half of the world's population and causes gastric cancer. Recent studies have highlighted the importance of macrophage immunometabolism in their activation state and function...

2022-06-14 | MTBLS2851 | MetaboLights

Using S-adenosyl-L-homocysteine capture compounds to characterize S-adenosyl-L-methionine and S-adenosyl-L-homocysteine binding proteins.

Not available

S-EPMC4315328 | biostudies-literature

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