Hopkins P P - OmicsDI

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Unknown (19995)
Genomics (136)
Proteomics (128)
Genomic (95)
Transcriptomics (93)
Metabolomics (14)
Other (3)
Models (1)

Organisms

Homo sapiens (172)
Mus musculus (49)
Ovis aries (7)
Rattus norvegicus (7)
Escherichia coli (7)
Danio rerio (3)
Saccharomyces cerevisiae (3)
Severe acute respiratory syndrome coronavirus 2 (3)
Bos taurus (2)
Caenorhabditis elegans (2)
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Drosophila melanogaster (1)
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Equus caballus (1)
Mycobacterium tuberculosis H37Rv (1)
Phlebotomus papatasi (1)
Plasmodium berghei ANKA (1)

Organisms

Homo sapiens (25)
Mus musculus (13)
Caenorhabditis elegans (6)
Anopheles gambiae (2)
Drosophila melanogaster (2)
Mycobacterium tuberculosis CDC1551 (1)
Pseudomonas aeruginosa PAO1 (1)
Plasmodium berghei (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Plasmodium falciparum (1)
Apis mellifera (1)
Staphylococcus aureus (1)
Rattus norvegicus (1)

Repository

pride (108)
biostudies-arrayexpress (95)
dbGaP (95)
ENA (68)
EGA (65)
MassIVE (19)
MetaboLights (8)
MetabolomicsWorkbench (6)
GPMDB (3)
geo (2)
BioModels (1)
PanoramaPublic (1)

Tissue

Cell culture (23)
Brain (8)
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T cell (3)
Blood (2)
Blood (2)
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Fibroblast (2)
Head and neck squamous cell carcinoma cell line (2)
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Urine (2)
Feces (1)
Adrenal gland (1)
Astrocyte of the cerebral cortex (1)
B cell (1)
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Blood cell (1)

Disease

Disease free (7)
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Not Available (3)
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Human immunodeficiency virus infectious disease (2)
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Multibacillary (1)
Limited scleroderma (1)
COPD (1)
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COVID-19 (1)
Cancer (1)
Carcinoma (1)
Colon cancer (1)
Colorectal cancer (1)
Diabetic retinopathy (1)
Eye disease (1)
Gallbladder carcinoma (1)
Gastroesophageal adenocarcinoma (1)
Heart failure (1)
Liver disease (1)
Mulibrey nanism (1)
Myocardial ischemia (1)
Osteoarthritis (1)
Pancreatic ductal adenocarcinoma (1)
Papillary renal cell carcinoma (1)
Parkinson's disease (1)

Technology Type

Mass Spectrometry (114)
Shotgun proteomics (65)
Bottom-up proteomics (21)
Affinity purification coupled with mass spectrometry proteomics (13)
Data-dependent acquisition (10)
Mass spectrometry (6)
ESI (6)
Gel-based experiment (4)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Mass spectrometry assay (2)
Affinity proteomics (2)
Data-independent acquisition (2)
Olink affinity proteomics (2)
Top-down proteomics (2)
Affymetrix OncoScan FFPE Express (1)
SWATH MS (1)

Instrument Platform

Q Exactive (8)
Instrument (3)
LTQ Orbitrap Elite (3)
Orbitrap Fusion Lumos (3)
TimsTOF SCP (3)
Illumina Genome Analyzer IIx (2)
Illumina Genome Analyzer II (2)
LTQ Orbitrap Velos (2)
ZenoTOF 7600 (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
G2505. Agilent’s Scan Control software v. A.7.01 and Feature Extraction. (1)
GenePix 4000B [Axon Instruments] (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
Orbitrap Eclipse (1)
Q Exactive HF (1)
TimsTOF fleX (1)
TripleTOF 6600 (1)
Direct infusion MS - positive (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse-phase (1)

Publication Date

2022 (21)
2016 (19)
2024 (18)
2013 (17)
2015 (16)
2025 (16)
2014 (13)
2012 (13)
2026 (13)
2018 (12)
2011 (10)
2010 (10)
2009 (10)
2017 (9)
2021 (8)
2019 (7)
2008 (6)
2023 (6)
2020 (4)
2005 (2)
2007 (1)
2004 (1)

CHEBI ID

CHEBI:15428 (5)
CHEBI:16610 (5)
CHEBI:16958 (5)
CHEBI:17822 (5)
CHEBI:133144 (4)
CHEBI:16238 (4)
CHEBI:16449 (4)
CHEBI:16750 (4)
CHEBI:16919 (4)
CHEBI:17050 (4)
CHEBI:17126 (4)
CHEBI:17268 (4)
CHEBI:17562 (4)
CHEBI:18107 (4)
CHEBI:18132 (4)
CHEBI:22653 (4)
CHEBI:6650 (4)
CHEBI:73004 (4)
CHEBI:82966 (4)
CHEBI:116314 (3)
CHEBI:133028 (3)
CHEBI:133077 (3)
CHEBI:133139 (3)
CHEBI:133141 (3)
CHEBI:133515 (3)
CHEBI:15354 (3)
CHEBI:15356 (3)
CHEBI:15676 (3)
CHEBI:15698 (3)
CHEBI:15727 (3)

Metabolite Name

(R)-3-hydroxybutyrylcarnitine (3)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2) (3)
1-(1-enyl-palmitoyl)-GPE (P-16:0) (3)
1-(1-enyl-stearoyl)-GPE (P-18:0) (3)
1-arachidonoyl-GPI (20:4) (3)
1-myristoyl-2-palmitoyl-GPC (14:0/16:0) (3)
1-palmitoyl-2-docosahexaenoyl-GPE (16:0/22:6) (3)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (3)
1-palmitoyl-2-palmitoleoyl-GPC (16:0/16:1) (3)
1-palmitoyl-2-stearoyl-GPC (16:0/18:0) (3)
1-palmitoyl-GPE (16:0) (3)
1-stearoyl-2-docosahexaenoyl-GPE (18:0/22:6) (3)
1-stearoyl-2-oleoyl-GPE (18:0/18:1) (3)
2'-deoxycytidine (3)
2'-deoxyuridine (3)
2-hydroxyglutarate (3)
2-palmitoleoyl-GPC (16:1) (3)
2-stearoyl-GPE (18:0) (3)
3-phosphoglycerate (3)
AMP (3)
Acetylphosphate (3)
Alanine (3)
Alpha-ketoglutarate (3)
CDP-choline (3)
CDP-ethanolamine (3)
CMP (3)
CoA-glutathione (3)
FAD (3)
NAD+ (3)
Uracil (3)

First Public Date

2014 (20)
2025 (8)
2023 (7)
2019 (7)
2024 (6)
2026 (5)
2021 (3)
2018 (3)
2015 (3)
2022 (2)
2013 (2)
2017 (1)
2016 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205 USA (6)
Johns Hopkins University (5)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205 USA (5)
733 N. Broadway Miller Research Building room 527 Johns Hopkins University Baltimore, MD 21205 (3)
Department of Chemistry, Johns Hopkins University, Baltimore, Maryland, United States (2)
Institute of Genetic Medicine, Johns Hopkins University School of Medicine (2)
Johns Hopkins University School of Medicine (2)
Johns Hopkins University, Chemistry Department, Fried Lab, USA (2)
Professor, Molecular Medicine Scientific Director UF Scripps Biomedical Research University of Florida (2)
The Wilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287 USA (2)
Wilmer Eye Institute, Smith Building, M015, 400 N. Broadway, Baltimore, MD 21287 (2)
1Department of Ophthalmology, Johns Hopkins University School of Medicine, Baltimore, MD (1)
1Department of Pathology, Johns Hopkins University, Baltimore, Maryland 21287, USA (1)
Aikaterini Kontrogianni-Konstantopoulos, Ph.D. Professor of Biochemistry and Molecular Biology Director, Interdisciplinary Training Program in Muscle Biology Marlene and Stewart Greenebaum Comprehensive Cancer Center University of Maryland School of Medicine 108 N. Greene Street, 215A Baltimore, MD 21201 (1)
Assistant Professor, Department of Chemistry Assistant Professor, Department of Biology (by courtesy) Assistant Professor, Thomas C. Jenkins Department of Biophysics (by courtesy) Preceptor, Chemistry-Biology Interface (CBI) Program (1)
Assistant Professor, Department of Chemistry Assistant Professor, Thomas C. Jenkins Department of Biophysics (by courtesy) (1)
Assistant professor, Biochemistry and Molecular Biology, Johns Hopkin Bloomberg Schools of Public Health, USA. (1)
Associate Professor of Neurology Institute for Cell Engineering Johns Hopkins University School of Medicine (1)
Associate Prosfessor, Johns Hopkins University, Department of Pathology Baltimore USA (1)
Cedars-Sinai Medical Center (1)
Chemical & Biomolecular Engineering, Johns Hopkins University (1)
Clinical Chemistry Division, Department of Pathology, The Johns Hopkins University, Baltimore, MD, USA (1)
Deparment of Chemistry, Syracuse University (1)
Department of Biochemistry and Molecular Biology, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD 21205, USA; Department of Oncology, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA; Department of Biophysics and Biophysical Chemistry, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA. (1)
Department of Biological Chemistry The Johns Hopkins School of Medicine Baltimore, MD, 21205, USA (1)
Department of Biological Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD, USA ( lab head ) (1)
Department of Biotechnology, Graduate School of Engineering, The University of Osaka, Japan (1)
Department of Cell Biology School of Medicine Johns Hopkins University Baltmore, MD USA (1)
Department of Cell Biology, School of Medicine, Johns Hopkins University, Baltimore, MD, USA (1)
Department of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern, Bern, Switzerland (1)

IsPrivate

False (1)

Classification

bacteria (3)
protozoa (2)

Modification

2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)
4 (1)
Not available (1)

Study type

Transcription profiling by array (59)
Comparative genomic hybridization by array (9)
RNA-seq of coding RNA (8)
Methylation profiling by array (5)
Transcription profiling by RT-PCR (2)
Unknown experiment type (1)
Animal - One-color microarray (1)
ChIP-chip by tiling array (1)
Human - High-throughput sequencing (1)
Cell line - One-color microarray (1)
ChIP-chip by array (1)
MicroRNA profiling by high throughput sequencing (1)
Other (1)
ChIP-seq (1)
MicroRNA profiling by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (2046)
2021 (2036)
2023 (1816)
2025 (1646)
2024 (1632)
2020 (1627)
2019 (1344)
2018 (1275)
2017 (1156)
2016 (1036)
2015 (1000)
2014 (809)
2013 (536)
2012 (454)
2011 (401)
2010 (307)
2009 (249)
2026 (243)
2008 (189)
2007 (76)
2006 (53)
2005 (41)
2004 (30)
2003 (21)
2002 (19)
2001 (15)
2000 (14)
1999 (9)
1998 (6)
1997 (4)

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Elongation Factor P is important for sporulation initiation

PRJNA918322 | ENA

Cohort profile: the Johns Hopkins COVID Long Study (JHCLS)-a US nationwide prospective cohort study.

Not available

S-EPMC11191784 | biostudies-literature

Protein interactors of MEG-1 in C. elegans embryos

In animals with germ plasm, specification of the germline involves “germ granules”, cytoplasmic condensates that enrich maternal transcripts in the germline founder cells. In C. elegans embryos, P granules enrich maternal transcripts, but surprisingly P granules are not essential for germ cell fate ...

ORGANISM(S): Caenorhabditis elegans

2022-10-05 | PXD036610 | Pride