Hou D D - OmicsDI

Show results for

Unknown (5756)
Proteomics (124)
Transcriptomics (115)
Models (56)
Genomics (29)
Metabolomics (24)

Organisms

Saccharomyces cerevisiae (3)
Aspergillus fischeri (1)
Aspergillus nidulans FGSC A4 (1)
Aspergillus terreus (1)
Batrachochytrium dendrobatidis (1)
Botrytis cinerea (1)
Chaetomium globosum (1)
Clavispora lusitaniae (1)
Debaryomyces hansenii (1)
Eremothecium gossypii FDAG1 (1)
Fusarium verticillioides (1)
Histoplasma capsulatum (1)
Kluyveromyces lactis (1)
Komagataella pastoris (1)
Laccaria bicolor (1)
Lodderomyces elongisporus (1)
Meyerozyma guilliermondii ATCC 6260 (1)
Parastagonospora nodorum (1)
Phycomyces blakesleeanus (1)
Pyricularia grisea (1)
Rhodonia placenta (1)
Scheffersomyces stipitis (1)
Schizosaccharomyces japonicus (1)
Schizosaccharomyces pombe (1)
Sporobolomyces roseus (1)
Trichoderma asperellum (1)
Trichoderma virens (1)
Uncinocarpus reesii (1)
Yarrowia lipolytica (1)
Zymoseptoria tritici (1)

Repository

biostudies-arrayexpress (132)
pride (73)
BioModels (56)
iProX (35)
MetaboLights (23)
EGA (13)
MassIVE (12)
PAXDB (2)
GNPS (1)
jPOST (1)

Tissue

Cell culture (14)
Epithelial cell (5)
Blood plasma (4)
Kidney (3)
Leaf (3)
Liver (3)
Plant cell (3)
Whole body (3)
Early embryonic cell (2)
Embryo (2)
Heart (2)
Lung (2)
MCF-10A cell (2)
MDA-MB-231 cell (2)
Seed (2)
Sperm (2)
Testis (2)
B cell (1)
Blood (1)
Blood cell (1)
Brain (1)
Cilium (1)
Extracellular vesicle (1)
Fibroblast (1)
Germinal epithelium of ovary (1)
HEK-293 cell (1)
Intestinal epithelial cell (1)
Jejunum (1)
Leukocyte (1)
Macrophage (1)

Disease

Acute leukemia (3)
Malignant neoplasm of ovary (2)
VSV infection (1)
Normal (1)
Brain cancer (1)
Chronic kidney disease (1)
Developmental and epileptic encephalopathy 2 (1)
Disease free (1)
Neurodevelopmental abnormality (1)
Ovarian carcinoma (1)
Schizophrenia (1)
Severe acute respiratory syndrome (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (73)
Shotgun proteomics (36)
Mass spectrometry (20)
Bottom-up proteomics (15)
Data-dependent acquisition (11)
Affinity purification coupled with mass spectrometry proteomics (4)
Data-independent acquisition (4)
Immunopeptidomics (3)
Mass spectrometry assay (2)
Gel-based experiment (2)
SWATH MS (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Glycoproteomics (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (13)
Liquid Chromatography MS - positive - reverse phase (10)
Illumina NovaSeq 6000 (9)
Illumina HiSeq 2500 (7)
TripleTOF 5600 (4)
Agilent 2100 Bioanalyzer (3)
HiSeq X Ten (3)
Orbitrap Fusion Lumos (3)
Q Exactive (3)
Liquid Chromatography MS - negative - hilic (3)
Pacbio Revio (2)
PromethION (2)
GeneChip Instrument System (2)
Affymetrix mouse gene 1.0 ST arrays (2)
Agilent NGS Workstation (2)
Illumina HiSeq 4000 (2)
Liquid Chromatography MS - positive - hilic (2)
Using NEBNext Ultra II DNA Library (1)
RNA Qubit (Invitrogen Q32852) (1)
Zymo Quick-RNA Microprep Kit (Zymo Research R1051) (1)
12-well plates (Sarstedt 83.3921), 24-Well Plates (1)
Microbeads (1)
Ribo-Zero Gold (Illumina) (1)
Illumina Genome Analyzer II (1)
NextSeq 2000 (1)
Illumina MiSeq (1)
NextSeq 500 (1)
6530A Q-TOF LC/MS (1)
LTQ (1)
Orbitrap Exploris 480 (1)

Publication Date

2016 (75)
2025 (33)
2026 (26)
2022 (26)
2019 (18)
2020 (16)
2013 (16)
2024 (15)
2021 (15)
2023 (14)
2012 (13)
2015 (12)
2014 (12)
2017 (10)
2010 (9)
2018 (7)
2011 (7)
2008 (6)
2007 (3)
2009 (2)

UNIPROT ID/AC

89462.XP_006039626.1 (2)
89462.XP_006039668.1 (2)
89462.XP_006039692.1 (2)
89462.XP_006039696.1 (2)
89462.XP_006039697.1 (2)
89462.XP_006039712.1 (2)
89462.XP_006039721.1 (2)
89462.XP_006039763.1 (2)
89462.XP_006039815.1 (2)
89462.XP_006039846.1 (2)
89462.XP_006039847.1 (2)
89462.XP_006039864.1 (2)
89462.XP_006039919.1 (2)
89462.XP_006039938.1 (2)
89462.XP_006039950.1 (2)
89462.XP_006039955.1 (2)
89462.XP_006039984.1 (2)
89462.XP_006039985.1 (2)
89462.XP_006039986.1 (2)
89462.XP_006040008.1 (2)
89462.XP_006040012.1 (2)
89462.XP_006040013.1 (2)
89462.XP_006040026.1 (2)
89462.XP_006040037.1 (2)
89462.XP_006040043.1 (2)
89462.XP_006040056.1 (2)
89462.XP_006040057.1 (2)
89462.XP_006040062.1 (2)
89462.XP_006040063.1 (2)
89462.XP_006040065.1 (2)

CHEBI ID

CHEBI52386 (56)
CHEBI52388 (56)
CHEBI52389 (56)
CHEBI52615 (56)
CHEBI:17029 (56)
CHEBI:17810 (56)
CHEBI:17909 (56)
CHEBI:18246 (56)
CHEBI:28573 (56)
CHEBI:48943 (56)
CHEBI:49183 (56)
CHEBI:52325 (56)
CHEBI:52327 (56)
CHEBI:52328 (56)
CHEBI:52329 (56)
CHEBI:58608 (56)
CHEBI:74474 (56)
CHEBI:11614 (55)
CHEBI:12886 (55)
CHEBI:13086 (55)
CHEBI:13711 (55)
CHEBI:1463 (55)
CHEBI:15446 (55)
CHEBI:16475 (55)
CHEBI:16480 (55)
CHEBI:16863 (55)
CHEBI:17126 (55)
CHEBI:17284 (55)
CHEBI:17309 (55)
CHEBI:17411 (55)

Metabolite Name

Linoleic acid (5)
Pipecolic acid (5)
Taurocholic acid (5)
Arachidonic acid (4)
Creatine (4)
Creatinine (4)
Glutathione (4)
L-Histidine (4)
L-Isoleucine (4)
L-Methionine (4)
Ornithine (4)
Pyridoxamine (4)
Uracil (4)
12,13-EpOME (3)
Arginine (3)
Asparagine (3)
Betaine (3)
Biotin (3)
Cholic acid (3)
Cytosine (3)
Deoxycholic acid (3)
Dihydrouracil (3)
Glycerophosphocholine (3)
Glycine (3)
Hypoxanthine (3)
Indole-3-acetamide (3)
Inosine (3)
L-Arginine (3)
L-Lysine (3)
L-Phenylalanine (3)

IsPrivate

False (56)

Model Flag

Non Kinetic (56)

Modelling Approach

Constraint-based model (56)

Study type

Transcription profiling by array (54)
RNA-seq of coding RNA (27)
RNA-seq of non coding RNA (7)
Other (6)
ChIP-seq (6)
DNA-seq (5)
Methylation profiling by high throughput sequencing (5)
Comparative genomic hybridization by array (4)
4C (3)
Unknown experiment type (2)
Human - One-color microarray (2)
MicroRNA profiling by array (2)
RNA-seq of coding RNA from single cells (2)
Transcription profiling by SAGE (1)
ChIP-chip by tiling array (1)
Genotyping by array (1)
MicroRNA profiling by high throughput sequencing (1)
ScATAC-seq (1)
Methylation profiling by array (1)
Proteomic profiling by array (1)

Release Date

2025 (880)
2024 (740)
2022 (737)
2023 (696)
2021 (605)
2020 (467)
2019 (338)
2018 (280)
2017 (228)
2016 (180)
2015 (168)
2026 (140)
2014 (122)
2013 (88)
2012 (58)
2011 (36)
2010 (33)
2009 (28)
2008 (27)
2007 (13)
2005 (5)
2004 (5)
2003 (5)
2006 (4)
2002 (2)
2000 (1)
1999 (1)
1998 (1)

Lab affiliation

Department of Leukemia, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (3)
Third Military Medical University (3)
Institute of Translational Medicine, Zhejiang University School of Medicine, Zhejiang University (2)
Leukemia Department, MD Anderson Cancer Center, Houston, TX 77030 (2)
Mayo Clinic, Department of Oncology (2)
School of Laboratory Medicine and Biotechnology, Southern Medical University (2)
Shanghai Institute of Rheumatology, Renji Hospital, Shanghai Jiao Tong University School of Medicine (SJTUSM) (2)
State Key Laboratory of Metabolism and Regulation in Complex Organisms, Hubei Provincial Research Center for Basic Biological Sciences, College of Life Sciences, TaiKang Center for Life and Medical Sciences, Wuhan University (2)
1. Laboratory of Protein and Peptide Pharmaceuticals & Laboratory of Proteomics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China 2. University of Chinese Academy of Sciences, Beijing 100049, China (1)
Analytical Chemistry Lab, Istituto Italiano di Tecnologia, Via Morego 30, 16163, Genova, Italy (1)
Anhui Province Key Laboratory of Medical Physics and Technology, Institute of Health and Medical Technology, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei, Anhui 230031, P. R. China University of Science and Technology of China, Hefei, Anhui 230026, P. R. China Hefei Cancer Hospital, Chinese Academy of Sciences, Hefei, Anhui 230031, P. R. China Precision Medicine Research Laboratory of Anhui Province, Hefei, Anhui 230088, P. R. China (1)
Basic Forestry and Proteomics Research Center, Fujian Agriculture and Forestry University, China (1)
Beijing Key Laboratory for Prevention and Control of Infectious Diseases in Livestock and Poultry, Institute of Animal Husbandry and Veterinary Medicine, Beijing Academy of Agriculture and Forestry Sciences, Haidian District, Beijing, China. (1)
Center for Cell Lineage and Development, CAS Key Laboratory of Regenerative Biology, Guangdong Provincial Key Laboratory of Stem Cell and Regenerative Medicine, GIBH-HKU Guangdong-Hong Kong Stem Cell and Regenerative Medicine Research Centre, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, China. (1)
Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Oxford, OX3 7FZ, UK (1)
Changchun Veterinary Research Institute (1)
Charité Universitätsmedizin, Department of Biochemistry, 10117 Berlin, Germany The Wellcome Centre for Human Genetics, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7BN, UK Max Planck Institute for Molecular Genetics, Berlin, Germany (1)
Clinical Research Division, Fred Hutchinson Cancer Research Center (1)
College of Agriculture/Hubei Key Laboratory of Waterlogging Disaster and Agricultural Use of Wetland, Yangtze University, Jingzhou, Hubei 434025, China (1)
College of Horticulture, Vegetable Genetics and Breeding Laboratory, Anhui Agricultural University, 130 West Changjiang Road, 230036 Hefei, Anhui, China; (1)
College of Veterinary Medicine, Yangzhou University, Yangzhou 225009, PR China (1)
Department of Biosciences, Univesity of Oslo (1)
Department of Cardiology, Chengdu Third People’s Hospital/Affiliated Hospital of Southwest Jiaotong University, Chengdu, China. (1)
Department of Chemistry, Johns Hopkins University (1)
Department of Molecular Immunology, Institute of Basic Medical Sciences (1)
Department of Nephrology, Renji Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, 200127, P.R. China. (1)
Department of Pathology, Institute of Systems Biomedicine, School of Basic Medical Sciences, Beijing Key Laboratory of Tumor Systems Biology, Peking University Health Science Center, Beijing, China (1)
Doctor at Tongji Hospital, Huazhong University of Science and Technology, Wuhan, China (1)
Guangzhou National Laboratory, Guangzhou 510005, Guangdong Province, China (1)
Guangzhou National Laboratory, Guangzhou International Bio-Island, Guangzhou 510000, China (1)