Howard J J - OmicsDI

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Unknown (12270)
Transcriptomics (83)
Proteomics (48)
Genomics (31)
Models (8)
Genomic (7)
Metabolomics (5)
Multiomics (1)

Organisms

Homo sapiens (53)
Andropogon gerardi (45)
Bacteria (45)
Canis lupus familiaris (45)
Cnidaria (45)
Ensifer adhaerens (45)
Eukaryota (45)
Fasciola (45)
Mus musculus (22)
Drosophila melanogaster (11)
Rattus norvegicus (8)
Arabidopsis thaliana (4)
Saccharomyces cerevisiae (4)
Xenopus laevis (2)
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (2)
Macaca mulatta (2)
Rattus rattus (2)
Escherichia coli K-12 (1)
Bacteria (1)
Clostridioides difficile (1)
Escherichia coli (1)
Mammalia (1)
Colletotrichum higginsianum (1)
Toxoplasma gondii (1)
Bos indicus (1)
synthetic construct (1)
Mycobacterium tuberculosis (1)
Staphylococcus aureus (1)
Bos taurus (1)
Danio rerio (1)

Organisms

Synechococcus elongatus PCC 7942 = FACHB-805 (1)

Repository

biostudies-arrayexpress (87)
pride (45)
EGA (26)
BioModels (7)
dbGaP (7)
MetaboLights (5)
FAIRDOMHub (1)
MassIVE (1)
PanoramaPublic (1)
PeptideAtlas (1)
ENA (1)

Tissue

Liver (8)
Cell culture (6)
Hepatocyte (5)
Kidney (5)
Blood plasma (3)
Brain (2)
Early embryonic cell (2)
Embryonic stem cell (2)
HeLa cell (2)
Lung (2)
Permanent cell line cell (2)
Brain (1)
Antler (1)
Blood (1)
Blood cell (1)
Blood serum (1)
Cell suspension culture (1)
Egg (1)
Epithelial cell (1)
Erythrocyte (1)
Fibroblast (1)
Heart (1)
Macrophage (1)
Mammary gland (1)
Mammary gland tumor cell (1)
Pancreas (1)
Saliva (1)
Skin (1)
Small intestine mucosa (1)
Spinal cord (1)

Disease

Clostridium difficile colitis (1)
Normal transgenic (transgenic betaARKct) (1)
Acute leukemia (1)
Biliary atresia (1)
Breast cancer (1)
Cardiovascular system disease (1)
Leukemia (1)
Malaria (1)
Prostate adenocarcinoma (1)
Retinal degeneration (1)

Technology Type

Mass Spectrometry (45)
Shotgun proteomics (31)
Affinity purification coupled with mass spectrometry proteomics (7)
Gel-based experiment (6)
Mass spectrometry (5)
SWATH MS (4)
SRM/MRM (3)
Bottom-up proteomics (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Data-dependent acquisition (2)
Illumina HiSeq 2000, unknown (1)
Illumina HiSeq 2000, Illumina_2.5M (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - reverse phase (3)
NextSeq 500 (2)
Illumina HiSeq 2500 (1)
Illumina HiSeq 3000 (1)
Illumina HiSeq 4000 (1)
Q Exactive (1)
Flow injection analysis MS - (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - hilic (1)
LTQ Orbitrap (1)

Publication Date

2021 (14)
2018 (14)
2008 (14)
2024 (12)
2013 (12)
2020 (9)
2007 (9)
2006 (9)
2011 (8)
2012 (7)
2010 (6)
2022 (6)
2015 (5)
2014 (5)
2019 (4)
2009 (4)
2025 (4)
2016 (2)
2023 (2)
2005 (1)
2026 (1)

UNIPROT ID/AC

P09560 (2)
Q90W58 (2)
Q05116 (2)
P26696 (2)
P07659 (1)
P00573 (1)
P42212 (1)
A0A024R8H9 (1)
A0A024RC46 (1)
A0A087WTX5 (1)
A0A087WVW2 (1)
A0A087WVZ5 (1)
A0A087WWA5 (1)
A0A087WWK8 (1)
A0A087WXI0 (1)
A0A087WYL9 (1)
A0A087X130 (1)
A0A087X1S3 (1)
A0A087X1V9 (1)
A0A0A0MR66 (1)
A0A0A0MS07 (1)
A0A0A0MS51 (1)
A0A0A0MSA7 (1)
A0A0C4DG89 (1)
A0A0C4DGT3 (1)
A0AVT1 (1)
A0FGR8 (1)
A0FGR8-2 (1)
A0FGR8-6 (1)
A0M8Q6 (1)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:18009 (2)
CHEBI:16474 (2)
CHEBI:28300 (2)
CHEBI:25017 (2)
CHEBI:6650 (2)
CHEBI:29016 (2)
CHEBI:78320 (2)
CHEBI:33697 (1)
CHEBI:18276 (1)
CHEBI:55474 (1)
CHEBI:56080 (1)
CHEBI:61448 (1)
CHEBI:18421 (1)
CHEBI:17535 (1)
CHEBI:16796 (1)
CHEBI:16240 (1)
CHEBI:15379 (1)
CHEBI:33699 (1)
CHEBI:157617 (1)
CHEBI:157616 (1)
CHEBI:157615 (1)
CHEBI:157614 (1)
CHEBI:157613 (1)
CHEBI:157612 (1)
CHEBI:157611 (1)
CHEBI:24705 (1)
CHEBI:155821 (1)
CHEBI:66865 (1)
CHEBI:66861 (1)
CHEBI:72389 (1)

Metabolite Name

Malate (2)
Glutamate (2)
Leucine (2)
Aspartate (2)
Lactate (2)
Succinate (2)
Xanthoxycyclin F (1)
Xanthoxycyclin E (1)
Xanthoxycyclin D (1)
Xanthoxycyclin C (1)
Xanthoxycyclin B (1)
Xanthoxycyclin A (1)
Evolidine (1)
Acylcarnitine C3 (1)
Acylcarnitine C16:1-OH (1)
GTP?? (1)
Glutathione, reduced (1)
Glycochenodeoxycholate 7-sulfate (1)
PC ae C40:6 (1)
PC aa C40:6 (1)
PC aa C40:2 (1)
PC aa C40:1 (1)
PC aa C38:6 (1)
PC aa C38:0 (1)
PC aa C36:6 (1)
LysoPC a C18:2 (1)
TG 54:1|TG 18:0_18:0_18:1 (1)
TG 54:0 (1)
TG 56:2|TG 18:0_18:1_20:1 (1)
TG O-51:1 (1)

First Public Date

2014 (1)

Modelling Approach

Ordinary differential equation model (7)

Lab affiliation

Centre for Applied Pharmacokinetic Research, School of Health Sciences, The University of Manchester, UK (7)
Laboratory of Chemical Biology and Microbial Pathogenesis, The Rockefeller University, New York, NY 10065, USA (2)
Laboratory of chemical biology and microbial pathogenesis, The Rockefeller University, New York, USA (2)
University of Texas at Austin Molecular Biosciences (2)
1Division of Hematology/Oncology, Boston Children’s Hospital and Department of Pediatric Oncology, Dana-Farber Cancer Institute (DFCI), Harvard Stem Cell Institute, Harvard Medical School, Howard Hughes Medical Institute, Boston, MA 02115, USA (1)
Centre for Applied Pharmacokinetic Research (CAPKR), University of Manchester (1)
Centre for Applied Pharmacokinetic Research, School of Health Sciences, The University of Manchester (1)
Centre for Applied Pharmacokinetic Research, School of Health Sciences, The University of Manchester. (1)
Children’s Medical Research Institute, Faculty of Medicine and Health, The University of Sydney, Westmead, NSW 2145, Australia (1)
Clinical Diagnostic Laboratory Department of Clinical Veterinary Medicine Vetsuisse Faculty University of Bern Bern Switzerland (1)
David Geffen School of Medicine, UCLA, USA BD2K Center of Excellence for Big Data Computing at UCLA, UCLA, USA (1)
Department of Biochemistry, The University of Utah, Salt Lake City, UT, USA Howard Hughes Medical Institute, University of Utah, Salt Lake City, UT, USA (1)
Department of Biochemistry, University of Washington, Seattle, WA, USA. Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA Institute for Protein Design, University of Washington, Seattle, WA, USA (1)
Department of Biology, Massachusetts Institute of Technology, Building 68, 31 Ames St., Cambridge, MA 02139 Howard Hughes Medical Institute, Chevy Chase, MD (1)
Department of Cellular and Molecular Pharmamcology, UCSF (1)
Department of Chemistry, Stanford University, Stanford, California, USA Howard Hughes Medical Institute, Stanford, California, USA (1)
Department of Molecular Biology, Princeton University, New Jersey, USA (1)
Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, CA 94720 USA California Institute for Quantitative Biosciences, University of California at Berkeley, Berkeley, CA 94720 Howard Hughes Medical Institute, University of California at Berkeley, Berkeley, CA 94720 USA (1)
Department of Neuroscience, School of Medicine, University of Florida (1)
Division of Molecular Pathology Molecular and Systems Oncology Team The Institute of Cancer Research 237 Fulham Road, SW3 6JB London United Kingdom (1)
Howard Hughes Medical Institute and Department of Cell Biology Harvard Medical School 240 Longwood Avenue Boston, Massachusetts 02115, USA (1)
Howard Hughes Medical Institute and Department of Cell Biology, Harvard Medical School, 240 Longwood Avenue, Boston, MA 02115, USA (1)
Howard Hughes Medical Institute, Department of Biology, Indiana University, Bloomington, Indiana, USA (1)
Howard Hughes Medical Institute, Senator Paul D. Wellstone Muscular Dystrophy Specialized Research Center, Department of Molecular Physiology and Biophysics and Department of Neurology, Roy J. and Lucille A. Carver College of Medicine, The University of Iowa; Iowa City, Iowa, 52242; USA. (1)
Infectious Diseases, Department of Internal Medicine, Yale School of Medicine, Yale University, New Haven, CT 06520, USA; Howard Hughes Medical Institute, Chevy Chase, MD, 20815, USA (1)
Laboratory of Chemical Biology and Microbial Pathogenesis The Rockefeller University New York NY, USA (1)
Laboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM U1163, Necker Hospital for Sick Children, Paris, France; University of Paris, Imagine Institute, Paris, France; St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY, USA; Department of Pediatrics, Necker Hospital for Sick Children, AP-HP, Paris, France; Howard Hughes Medical Institute, New York, NY, USA (1)
Professor, Virology Director of the Laboratory of Molecular Virology (1)
School of Chemistry and Molecular Biosciences, The University of Queensland (1)
The Globe Institute, University of Copenhagen (1)