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TranscriptomicsTranscription profiling of synectin knock-out mouse primary endothelial cells before and after FGF2 induction
Transcriptional regulatory effects of synectin deletion in murine primary endothelial cells both before and after FGF2 induction.
ORGANISM(S): Mus musculus 
2006-10-01 | E-MEXP-820 | biostudies-arrayexpress
TranscriptomicsComparison Gene Expression and Biochemical Profile of Escherichia coli K12 and O157:H7 Interaction with Lettuce Rhizosphere
Leafy green vegetables, such as lettuce, have been increasingly implicated in outbreaks of foodborne illnesses due to contamination by Escherichia coli O157:H7. While E. coli can survive in soils, colonize plants, and survive on produce, very little is known about the interaction of E. coli with the...
ORGANISM(S): Escherichia coli 
2012-03-28 | E-GEOD-36885 | biostudies-arrayexpress
TranscriptomicsPlant microRNA profiling of Honeysuckle and Honeysuckle Decoction
Influenza A viruses (IAVs), particularly H1N1, H5N1 and H7N9, pose a substantial threat to public health worldwide. Here, we report that MIR2911, a honeysuckle (HS)-encoded atypical microRNA, directly targets IAVs with a broad spectrum. MIR2911 is highly stable in HS decoction, and continuous drinki...
ORGANISM(S): Lonicera japonica 
2014-10-22 | E-GEOD-55268 | biostudies-arrayexpress
Transcriptomicsepithelial-mesenchymal interaction of the breast
These 95 arrays are the basis for Figure 2 of our manuscript "An interferon-response induced by tumor-stroma interaction in a subset of human breast cancers". Abstract:Background Communication between different cell types is a cardinal feature of multi-cellular organisms and perturbations ...
ORGANISM(S): Homo sapiens 
2007-11-13 | E-GEOD-7260 | biostudies-arrayexpress
TranscriptomicsAn interferon-response induced by tumor-stroma interaction in a subset of human breast cancers
This SuperSeries is composed of the following subset Series: GSE7260: epithelial-mesenchymal interaction of the breast GSE7263: Effect of heterotypic interaction between breast cancer cell line MDA-MB231 and CCL-171 fibroblast Refer to individual Series
ORGANISM(S): Homo sapiens 
2007-11-13 | E-GEOD-7264 | biostudies-arrayexpress
ProteomicsiTRAQ-based proteomic analysis of dentate gyrus in temporal lobe epilepsy with hippocampal sclerosis
Temporal lobe epilepsy (TLE) is the most frequent type of focal epilepsy in adults, typically resistant to pharmacological treatment and mostly present with cognitive impairment and psychiatric comorbidities. The most common neuropathological hallmark in TLE patients is hippocampal sclerosis(HS). Ho...
ORGANISM(S): Homo sapiens (Human) 
2021-01-18 | PXD023048 | Pride
Temporal lobe epilepsy Dentate gyrus Quantitative proteomics Itraq Hippocampal sclerosis 
TranscriptomicsFeedback amplication of fibrosis through matrix stiffening and COX-2 suppression
We tested the hypothesis that increasing matrix stiffness on which normal human lung fibroblasts are grown promotes the expression of a fibrogenic cellular transcriptomic program. Keywords: Human lung fibroblast, matrix stiffness, PTGS2, COX-2, Prostaglandin E2 Total RNA extracted from normal human...
ORGANISM(S): Homo sapiens 
2010-07-15 | E-GEOD-22011 | biostudies-arrayexpress
TranscriptomicsBreast cancer endothelial interaction
MATERIALS AND METHODS: The genomic effects of tumor-endothelial interactions in cancer are not yet well characterized. To study this interaction in breast cancer, we set up an ex vivo coculture model with human benign and malignant breast epithelial cells with endothelial cells to determine the asso...
ORGANISM(S): Homo sapiens 
2010-02-17 | E-GEOD-20364 | biostudies-arrayexpress
TranscriptomicsEffect of heterotypic interaction between breast cancer cell line MDA-MB231 and CCL-171 fibroblast
These 12 arrays are the basis for Figure 1 of the "An interferon-response induced by tumor-stroma interaction in a subset of human breast cancers" manuscript. Figure 1: Effect of heterotypic interaction between breast cancer cell line MDA-MB231 and CCL-171 fibroblast. Biologically indepen...
ORGANISM(S): Homo sapiens 
2007-11-13 | E-GEOD-7263 | biostudies-arrayexpress
TranscriptomicsComparison Gene Expression and Biochemical Profile of Escherichia coli K12 and O157:H7 Interaction with Lettuce Rhizosphere
Leafy green vegetables, such as lettuce, have been increasingly implicated in outbreaks of foodborne illnesses due to contamination by Escherichia coli O157:H7. While E. coli can survive in soils, colonize plants, and survive on produce, very little is known about the interaction of E. coli with the...
ORGANISM(S): Escherichia coli 
2012-03-29 | GSE36885 | GEO
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