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TranscriptomicsAtlas of Gene Expression at Microanatomical Resolution of the Submandibular Salivary Gland
The goal of this study was to generate a spatiotemporal atlas of gene expression in the developing salivary gland. This will allow us to identify changes in gene expression that may result in the formation of the different domains of the salivary gland. At least 4 microarrays per location per time ...
ORGANISM(S): Mus musculus 
2011-07-01 | E-GEOD-22828 | biostudies-arrayexpress
TranscriptomicsSingle-nucleus RNA sequencing of human fetal lung from 4 anatomic regions
We performed micro-dissections of developing human lungs during the late pseudoglandular stage and performed single nuclear RNA-sequencing (n = 4; biological replicates from 103-122 PCD) on trachea, bronchi, non-cartilaginous airways, and distal lung.
ORGANISM(S): Homo sapiens 
2026-07-12 | E-MTAB-17244 | biostudies-arrayexpress
TranscriptomicsIn vitro regulation of human basal cell subtypes through the WNT signaling pathways
Lung basal cells were isolated from human trachea and cultured in airway organoid media with and without the addition of RSPO1. After establishment airway organoids RSPO1 was added for two weeks of culture. Data is from two distinct primary airway organoid lines and performed single nucleus-RNA sequ...
ORGANISM(S): Homo sapiens 
2026-05-29 | E-MTAB-17234 | biostudies-arrayexpress
TranscriptomicsSingle-nucleus RNA sequencing of positional airway organoids derived from human fetal lung at 4 anatomic regions (trachea, bronchus, NCA, distal)
We derived primary, epithelial-enriched organoids from 120 PCD human fetal lung, specifically from trachea, bronchus, non-cartilaginous airway, and distal airway. These positional airway organoids were grown in FANY airway media for the duration of 2 passages before collection for single-nucleus RNA...
ORGANISM(S): Homo sapiens 
2025-08-01 | E-MTAB-14961 | biostudies-arrayexpress
TranscriptomicsSingle-nucleus RNA sequencing of human fetal lung from 4 anatomic regions
We performed micro-dissections of developing human lungs during the late pseudoglandular stage and performed single nuclear RNA-sequencing (n = 4; biological replicates from 103-122 PCD) on trachea, bronchi, non-cartilaginous airways, and distal lung.
ORGANISM(S): Homo sapiens 
2025-08-01 | E-MTAB-14975 | biostudies-arrayexpress
TranscriptomicsBK virus infection induces changes of cellular gene expression in Vero cell
The general aim of this paper is to explore a little further into molecular biology of the interaction between virus and host cell. We seek to use cDNA microarray technology, one revolutionary methodological advance, to perform a high throughput analysis of cDNA clones with the intent of identifying...
ORGANISM(S): Homo sapiens 
2010-06-26 | E-GEOD-8085 | biostudies-arrayexpress
TranscriptomicsSingle-nucleus ATAC sequencing of human fetal lung from 4 anatomic regions
We performed micro-dissections of developing human lungs during the late pseudoglandular stage and performed single nuclear ATAC-sequencing (n = 2; biological replicates from 103-122 PCD) on trachea, bronchi, non-cartilaginous airways, and distal lung.
ORGANISM(S): Homo sapiens 
2026-07-18 | E-MTAB-17243 | biostudies-arrayexpress
TranscriptomicsSingle-nucleus RNA sequencing of healthy human adult lung from trachea, bronchi and bronchioles
We performed micro-dissections of adult human lung obtained through Gift of Life and performed single nuclear RNA-sequencing (n = 2 biological replicates, age 20, 26 yo) on trachea, bronchi, and bronchioles.
ORGANISM(S): Homo sapiens 
2025-08-01 | E-MTAB-14953 | biostudies-arrayexpress
UnknownHIV-1 Nef Generates Lasting Innate Immune Memory in Haematopoietic Stem and Progenitor Cells In Vivo
Not available
S-SCDT-10_1038-S44319-026-00838-W | biostudies-other
TranscriptomicsSingle cell RNA sequencing of CellTagging lung organoids
Here, we used a lentiviral-based barcoding method (CellTagging) to lineage trace progenitor cells in a human lung organoid model. 21-day cultures were transduced for 7 days, fluorescence activated cell sorted for GFP+ expression, and regrown as sparsely plated cells for additional 30 days before seq...
ORGANISM(S): Homo sapiens 
2023-04-21 | E-MTAB-12753 | biostudies-arrayexpress
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