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Unknown (3535)
Transcriptomics (135)
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Homo sapiens (125)
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biostudies-arrayexpress (147)
pride (84)
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Technology Type

Mass Spectrometry (84)
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Instrument Platform

Liquid Chromatography MS - positive - reverse phase (10)
Illumina NovaSeq 6000 (8)
Illumina HiSeq 2000 (7)
N/A (6)
Chromium Next GEM Single Cell Multiome ATAC + Gene Expression Reagent Bundle, (4)
Q Exactive Plus (4)
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Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
LMJ-SSP/ESI MS (Imaging MS) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)

Publication Date

2023 (34)
2013 (29)
2015 (23)
2014 (20)
2010 (19)
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2016 (14)
2024 (12)
2020 (12)
2012 (12)
2011 (12)
2019 (9)
2022 (9)
2008 (7)
2018 (5)
2017 (5)
2009 (2)
2007 (1)
2006 (1)

UNIPROT ID/AC

O00187 (1)
P01024 (1)
P02741 (1)
P04003 (1)
P06681 (1)
P0C0L4 (1)
P0C0L5 (1)
Q15485 (1)

CHEBI ID

CHEBI:15891 (5)
CHEBI:16359 (4)
CHEBI:16610 (4)
CHEBI:26078 (4)
CHEBI:137271 (3)
CHEBI:15318 (3)
CHEBI:15978 (3)
CHEBI:16196 (3)
CHEBI:16235 (3)
CHEBI:16335 (3)
CHEBI:16708 (3)
CHEBI:16811 (3)
CHEBI:17368 (3)
CHEBI:17561 (3)
CHEBI:18257 (3)
CHEBI:2376 (3)
CHEBI:26806 (3)
CHEBI:27732 (3)
CHEBI:28619 (3)
CHEBI:28865 (3)
CHEBI:28997 (3)
CHEBI:30769 (3)
CHEBI:30797 (3)
CHEBI:30882 (3)
CHEBI:34900 (3)
CHEBI:35038 (3)
CHEBI:45969 (3)
CHEBI:49033 (3)
CHEBI:18132 (1)
CHEBI:506227 (1)

Metabolite Name

Succinate (4)
Caffeine (3)
Cholic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1,1,1-Trichloroethane (2)
1,3,5-Trithiane (2)
1,3-Diphenylpropane (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
10Z-Nonadecenoic acid (2)
2,2',4,4',5,6'-Hexabromodiphenyl ether (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
2-Hexaprenyl-6-methoxyphenol (2)
2-Hydroxyestradiol-3-methyl ether (2)
3-(4-Hydroxy-3,5-diiodophenyl)lactic acid (2)
3-Iodothyronamine (2)
3-Oxotetradecanoyl-CoA (2)
3-Phosphoadenylylselenate (2)
3H-1,2-Dithiole-3-thione (2)
5-Chloroorsellinic acid (2)
5-Diphosphoinositol pentakisphosphate (2)
5-Methylthioribose (2)
6-phosphogluconate (2)
9(10)-EpOME (2)
AMP (2)
Acarbose (2)
Acetoacetyl-CoA (2)
Acetyl-CoA (2)
Acrylyl-CoA (2)

First Public Date

2014 (2)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Institute of Plant and Microbial Biology, Academia Sinica (4)
Genomics Research Center, Academia Sinica, Taipei, 11529 Taiwan (3)
Carnegie Mass Spectrometry Facility (2)
Department of Life Science, National Taiwan University (2)
Institute of Biological Chemistry, Academia Sinica, Taipei, 115201, Taiwan Institute of Biochemical Sciences, National Taiwan University, Taipei, 106319, Taiwan International Institute for Sustainability with Knotted Chiral Meta Matter (SKCM2), Hiroshima University, Hiroshima, 739-8511, Japan (2)
Institute of Molecular and Cellular Biology, Department of Life Science, National Taiwan University, Taipei, Taiwan (2)
Shanghai Center for Plant Stress Biology (2)
1. Institute of Biological Chemistry, Academia Sinica, Taipei, Taiwan 2. Institute of Biochemical Sciences, National Taiwan University, Taipei, Taiwan (1)
1Department of Chemistry, University of Texas at Austin, Austin, TX, 78712, USA (1)
1Department of Pathology, Dana-Farber/Harvard Cancer Center, PhD Program in Immunology, Harvard Medical School; Department of Laboratory Medicine, Boston Children's Hospital, Enders Research Building, Room 811, Boston, MA, 02115, USA (1)
Academia Sinica (1)
Amgen Inc. (1)
Associate Professor Stephen F. and Fay Evans Martin Endowed Professorship in Chemistry CPRIT Scholar Department of Chemistry University of Texas at Austin (1)
Baker Heart & Diabetes Institute (1)
Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA USA (1)
Calico Life Sciences (1)
Canary Center at Stanford for Cancer Early Detection Department of Radiology Stanford University (1)
Canary Center at Stanford for Cancer Early Detection Department of Radiology Stanford University School of Medicine (1)
Case Western Reserve University (1)
Celleluar and Molecular Pharmacology, UCSF (1)
Chan Zuckerberg Biohub (1)
Children's Medical Research Institute, Westmead, NSW (1)
Children's Medical Research Institute, Westmead, NSW, Australia (1)
Department of Biochemistry Biophysics and Structural Biology, Department of Biochemistry and Molecular Biophysics, Washington University in St. Louis, St. Louis, Missouri, United States (1)
Department of Biochemistry and Molecular Medicine and the Norris Comprehensive Cancer Center, Keck School of Medicine, University of Southern California, Los Angeles, CA, 90089, USA (1)
Department of Biochemistry, Purdue University, West Lafayette, IN USA (1)
Department of Chemistry University of Virginia (1)
Department of Chemistry, University of Texas at Austin, Austin (1)
Department of Life Science, National Taiwan University, Taiwan (1)
Department of Medical Biotechnology and Laboratory Sciences, College of Medicine, Chang Gung University, Taiwan (1)

IsPrivate

False (1)

Modification

15.994915 (1)
2x(15)N labeled L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)
6.020129 (1)

Study type

Transcription profiling by array (80)
RNA-seq of coding RNA (22)
ChIP-seq (9)
RNA-seq of non coding RNA (7)
Single nucleus RNA sequencing (4)
Proteomic profiling by array (4)
ChIP-chip by tiling array (3)
Transcription profiling by RT-PCR (3)
Comparative genomic hybridization by array (3)
Unknown experiment type (2)
RNA-seq of coding RNA from single cells (2)
Transcription profiling by SAGE (1)
ChIP-chip by array (1)
Genotyping by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
Bisulfite-seq (1)
Other (1)
ScATAC-seq (1)
RNA-seq of total RNA (1)

Release Date

2022 (396)
2025 (372)
2021 (342)
2023 (334)
2020 (307)
2024 (294)
2019 (244)
2018 (218)
2015 (179)
2016 (168)
2017 (167)
2014 (146)
2013 (117)
2012 (97)
2010 (71)
2011 (57)
2026 (48)
2009 (46)
2008 (34)
2007 (12)
2006 (9)
2001 (5)
2005 (4)
2004 (4)
2003 (3)
2002 (3)
1998 (3)
2000 (2)

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The complete chloroplast genome of Lonicera fulvotomentosa Hsu et S. C. Cheng and its phylogenetic analysis.

Not available

S-EPMC7971229 | biostudies-literature

A Suspension Trapping-based Sample Preparation Workflow for Sensitive Plant Phosphoproteomics

Plant phosphoproteomics reveals a global view of phosphorylation-mediated signaling in plants, but it remains demanding a high-throughput method with detection sensitivity and quantification accuracy. In general, the indispensable protein precipitation step requiring for interferences removal limite...

ORGANISM(S): Arabidopsis Thaliana (mouse-ear Cress)

2023-08-28 | PXD039933 | JPOST Repository

Characterization of Nine Compounds Isolated from the Acid Hydrolysate of Lonicera fulvotomentosa Hsu et S. C. Cheng and Evaluation of Their In Vitro Activity towards HIV Protease.

Not available

S-EPMC6943440 | biostudies-literature

S. cerevisiae chromosomes biorient via gradual resolution of syntely between S phase and anaphase.

Not available

S-EPMC3802543 | biostudies-literature

Expression data comparing high serum-binding subline of C10F4 (named C10F4-S) with its parental line, C10F4

Comparison of high serum-binding subline of C10F4 (C10F4-S) with its parental line C10F4 cells and normal mouse lung.

ORGANISM(S): Mus musculus

2020-02-07 | E-MTAB-6936 | biostudies-arrayexpress

NO signaling and S-nitrosylation regulate PTEN inhibition in neurodegeneration.

Not available

S-EPMC2992530 | biostudies-literature

S-nitrosylation of endogenous protein tyrosine phosphatases in endothelial insulin signaling.

Not available

S-EPMC5514559 | biostudies-literature

Expression evolution in gene groups: Inferring non-neutral regulatory change in pathways from transcriptional profiling data

We profiled the transcriptomes of four Saccharomyces species, as well as pairwise hybrids between three of the species with S. cerevisiae For pairwise comparisons between Saccharomyces cerevisiae and each of S. paradoxus, S. mikatae, and S. bayanus, we performed 3'-end RNA-seq on RNA from each paren...

ORGANISM(S): Saccharomyces cerevisiae x Saccharomyces mikatae

2013-10-21 | E-GEOD-38875 | biostudies-arrayexpress

Spiranthes hachijoensis (Orchidaceae), a new species within the S. sinensis species complex in Japan, based on morphological, phylogenetic, and ecological evidence.

Not available

S-EPMC10126103 | biostudies-literature

Identification of the orphan G protein-coupled receptor GPR31 as a receptor for 12-(S)-hydroxyeicosatetraenoic acid.

Not available

S-EPMC3190773 | biostudies-literature

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