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MetabolomicsSingle cell lipidomics of adherent gut epithelial cell lines Caco2 and HT29-MTX reveals a metabolic switch

Raw MS data files for the CaCo02 and HT29-MTX single cells isolated using the Yokogawa SS2000 for the research article 'Single cell lipidomics of adherent gut epithelial cell lines Caco2 and HT29-MTX reveals a metabolic switch' 

2026-03-18 | MTBLS14074 | MetaboLights
TranscriptomicsRNA-sequencing of mRNAs from control and CAP-D3 deficient Salmonella infected HT-29 cells
BACKGROUND & AIMS- More frequent interaction of bacteria with the colonic epithelium is associated with ulcerative colitis (UC). The identities of all proteins which promote bacterial clearance in colonic epithelial cells are unknown. Previously, we discovered that dCAP-D3 (Chromosome Associated P...
ORGANISM(S): Homo sapiens 
2015-09-15 | E-GEOD-62520 | biostudies-arrayexpress
TranscriptomicsExpression data for HT29 cells treated with 5-aza-deoxy-cytidine [Affymetrix]
The RNA samples from HT-29 (ATCC) colon cancer cell line were reverse transcribed into cDNAs and categorized in 3 groups with different concentrations of 5-aza-deoxy-cytidine (5-Aza); in each group three replicative 150 mm cultures were treated with: 1) dimethyl sulfoxide (vehicle alone, 0 μM 5-Aza...
ORGANISM(S): Homo sapiens 
2013-09-17 | E-GEOD-41364 | biostudies-arrayexpress
TranscriptomicsHT-29 cells treated with IFN-γ
Expression data from HT-29 human colon adenocarcinoma cells treated with IFN-γ for 24 hr Total RNA was isolated from HT-29 cells after 24h stimulation with 200 U ml-1 IFN-γ (Roche). The experiment was done on three biological replicates.
ORGANISM(S): Homo sapiens 
2013-08-06 | E-GEOD-38516 | biostudies-arrayexpress
TranscriptomicsExpression data for HT29 cells treated with 5-aza-deoxy-cytidine [RNA-Seq]
The RNA samples from HT-29 (ATCC) colon cancer cell line were reverse transcribed to build cDNA libraries and categorized into 3 groups with different concentrations of 5-aza-deoxy-cytidine (5-Aza); in each group three replicative 150 mm cultures were treated with: 1) dimethyl sulfoxide (vehicle alo...
ORGANISM(S): Homo sapiens 
2013-09-17 | E-GEOD-41586 | biostudies-arrayexpress
TranscriptomicsRNA-seq analysis of HT-29, MCF10A, and MDA-MB-436 cells
RNA-seq data from HT-29 cells treated with IFN-M-NM-3 for 24 hr, MCF10A cells, and MDA-MB-436 cells. mRNA profiles of HT-29, MCF10A, and MDA-MB-436 were generated by deep sequencing using Illumina HiSeq 2000. All RNA sequencing data was generated by the Genomics Services Lab at the HudsonAlpha Insti...
ORGANISM(S): Homo sapiens 
2013-08-06 | E-GEOD-45258 | biostudies-arrayexpress
TranscriptomicsExon arrays from HT-29, MCF10A, and MDA-MB-436 cells
Expression data from HT-29 cells treated with IFN-γ for 24 hr, MCF10A cells, and MDA-MB-436 cells. Total RNA was isolated with the RNeasy Mini Kit (Qiagen). Sense-strand cDNA synthesis, terminal labeling, and hybridization were performed using Ambion WT Expression Kit (Applied Biosystems, P/N 44252...
ORGANISM(S): Homo sapiens 
2013-08-06 | E-GEOD-45195 | biostudies-arrayexpress
GenomicsHomo sapiens strain:HT-29-MTX
Homo sapiens strain:HT-29-MTX Raw sequence reads
PRJNA360431 | ENA
TranscriptomicsCDK8 knockdown in HT-29 cells and CDK8 & MED12 knockdown in R1 cells
This SuperSeries is composed of the following subset Series: GSE30815: CDK8 knockdown in HT-29 human colon cancer cells GSE30816: CDK8 and MED12 knockdown in R1 mouse ES cells Refer to individual Series
ORGANISM(S): Mus musculus 
2012-03-05 | E-GEOD-30817 | biostudies-arrayexpress
TranscriptomicsGene microarray data for HT-29 monolayer and spheroids
Colorectal cancers have a rare population of cells that express specific cell surface markers, and are referred to as cancer stem cells (CSC). Targeting CSCs, implicated in tumor relapse, is a paradigm shifting approach for colorectal cancer. We used gene microarray to analyze gene expression in HT-...
ORGANISM(S): Homo sapiens 
2015-04-01 | E-GEOD-65433 | biostudies-arrayexpress
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