Ht-29 cell - OmicsDI

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Technology Type

Mass Spectrometry (44)
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SWATH MS (4)
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Affinity purification coupled with mass spectrometry proteomics (2)
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Illumina HiSeq 2500 (1)
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Instrument Platform

Illumina HiSeq 4000 (7)
Liquid Chromatography MS - positive - reverse phase (7)
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Illumina NovaSeq 6000 (4)
Illumina MiSeq (3)
Illumina HiSeq 2000 (3)
NA (2)
HiSeq X Ten (2)
NextSeq 500 (2)
PCR machine; AMPure XP beads; TruSeq Stranded mRNA stranded prep. kit (1)
PCR machine; Superscript II polymerase Kit (Invitrogen); PCR machine; AMPure XP beads; TruSeq stranded mRNA sample prep kit.; TruSeq Stranded mRNA stranded prep. kit (1)
Centrifuge 5424R (Eppendorf); miRNeasy Mini Kit (Qiagen); TURBO^TM DNase (Ambion); Bioanalyser (Agilent) (1)
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PCR machine; MICROBExpress kit (Ambion); TruSeq Stranded mRNA stranded prep. kit (1)
PCR machine; AMPure XP beads; TruSeq stranded mRNA sample prep. kit. (1)
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Publication Date

2013 (31)
2016 (29)
2014 (25)
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2015 (20)
2012 (20)
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2026 (17)
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2020 (12)
2018 (10)
2017 (7)
2019 (6)
2008 (6)
2007 (3)
2005 (1)

CHEBI ID

CHEBI:64563 (3)
CHEBI:66860 (2)
CHEBI:145255 (2)
CHEBI:67058 (2)
CHEBI:64517 (2)
CHEBI:64566 (2)
CHEBI:36023 (2)
CHEBI:17858 (2)
CHEBI:16856 (2)
CHEBI:36313 (2)
CHEBI:16958 (2)
CHEBI:64294 (2)
CHEBI:17568 (2)
CHEBI:17509 (2)
CHEBI:53486 (2)
CHEBI:16919 (2)
CHEBI:72737 (2)
CHEBI:64483 (2)
CHEBI:17712 (2)
CHEBI:18089 (2)
CHEBI:24835 (1)
CHEBI:48591 (1)
CHEBI:39270 (1)
CHEBI:24059 (1)
CHEBI:50917 (1)
CHEBI:24402 (1)
CHEBI:32955 (1)
CHEBI:36735 (1)
CHEBI:38776 (1)
CHEBI:59659 (1)

Metabolite Name

Oxidized glutathione (2)
Docosapentaenoic acid (2)
Uracil (2)
Vaccenic acid (2)
Glutathione (2)
7-Ketocholesterol (2)
Xanthine (2)
Creatine (2)
Hippuric acid (2)
Phosphatidylcholine 38:1 (1)
Cycloartanols and derivatives (1)
Miscellaneous mixed metal/non-metals (1)
N-acylpiperidines (1)
Naphthofurans (1)
Fluorenes (1)
Oxasteroids and derivatives (1)
Galanthamine-type amaryllidaceae alkaloids (1)
Glycosphingolipids (1)
Aristolactams (1)
Oxirane carboxylic acids and derivatives (1)
Bilirubins (1)
Imidazoquinolines (1)
Pyrenes (1)
Phenylpyridines (1)
Organic nitro compounds (1)
Methylpyridines (1)
Heteroaromatic compounds (1)
Phenanthrolines (1)
Bisphosphonates (1)
Phosphonic acid esters (1)

First Public Date

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2014 (27)
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2020 (8)
2018 (7)
2019 (6)
2015 (6)
2016 (5)
2017 (4)
2013 (4)

Classification

bacteria (2)

Modification

15.994915 (2)
227.126991 (1)
57.021464 (1)
9.030194 (1)
N6 (1)

Study type

Transcription profiling by array (120)
RNA-seq of coding RNA (24)
ChIP-seq (5)
Other (4)
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Unknown experiment type (2)
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Cell line - One-color microarray (1)
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4C (1)
CUT&RUN (1)
Genotyping by high throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of non coding RNA (1)

Release Date

2023 (149)
2021 (134)
2022 (132)
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2020 (107)
2019 (96)
2018 (83)
2024 (82)
2016 (64)
2017 (63)
2015 (62)
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2012 (41)
2011 (37)
2010 (32)
2009 (31)
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2008 (14)
2007 (4)
2006 (2)
2005 (2)
2003 (2)
1998 (2)
2002 (1)
1999 (1)

Lab affiliation

Proteomics Mass Spectrometry, University of Tasmania (2)
Proteomics Unit, IMIBIC, Reina Sofía University Hospital, University of Córdoba, Córdoba, Spain (2)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (1)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute for Biomedical Research (1)
Bertozzi Lab Department of Chemistry 380 Roth Way MC: 5080 Stanford CA 94305-4401 (1)
Biomedical Proteomics Platform, Department of Health Sciences and Technology, ETH Zurich, 8093 Zurich, Switzerland Institute of Molecular Systems Biology at the Department of Biology, ETH Zurich, Zurich 8093, Switzerland (1)
Center of Neurodegenerative Diseases (1)
Chemistry I, Department of Medical Biochemistry and Biophysics, Karolinska Institutet SE 17177 Stockholm, Sweden. Department of Pharmacological & Technological Chemistry, I.M. Sechenov First Moscow State Medical University, Moscow, 119146, Russia. (1)
China Pharmaceutical University (1)
D.Sc., associate professor Head of Laboratory of Genetic Engineering Research Institute of Physical-Chemical Medicine (1)
Departament of Molecular Biologi and Biochemistry, Faculty of Sciences, University of Malaga, 29071 Malaga, Spain (1)
Department of Biochemistry and Molecular Biology, University of Southern Denmark (1)
Department of Biochemistry, Faculty of Biological Science, Tarbiat Modares University, Tehran, Iran (1)
Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School; Boston, MA, United States (1)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02215, USA (1)
Department of Chemistry and Biocheimstry at The Ohio State University; Comprehensive Cancer Center, The Ohio State University (1)
Department of Ophthalmology, Casey Eye Institute, Oregon Health & Science University, Portland, OR, USA (1)
Director, Duke Molecular Physiology Institute and Sarah W. Stedman Nutrition and Metabolism Center Professor Departments of Medicine (Division of Endocrinology, Metabolism, and Nutrition) and Pharmacology & Cancer Biology Duke University Medical Center (1)
Faculty of Chemistry, Chair of Drug and Cosmetics Biotechnology, Warsaw University of Technology, Warsaw, Poland (1)
Faculty of Medicine, University of Maribor, Slovenia Faculty of Chemistry and Chemical Engineering, University of Maribor, Slovenia (1)
Friedrich Miescher Institute for Biomedical Research Epigenetics Department Lab 1.22 (1)
Immune monitoring lab Department of Immunohematology and Blood transfusion Leiden University Medical Center (LUMC) The Netherlands (1)
Institute of Biomedical Chemistry(IBMC), Moscow (1)
Institute of Clinical Medical Sciences, China-Japan Friendship Hospital, Beijing 100029, China (1)
Institute of Diagnostic and Interventional Radiology, Jena University Hospital – Friedrich Schiller Uni-versity Jena, Am Klinikum 1, D-07740 Jena, Germany (1)
Intravacc, Antonie van Leeuwenhoeklaan 9, 3721 MA Bilthoven, The Netherlands (1)
Laboratory of Foodomics, Institute of Food Science Research (CIAL, CSIC), Calle Nicolás Cabrera 9, 28049, Madrid, Spain (1)
Laboratory of Foodomics, Institute of Food Science Research (CIAL, CSIC), Calle Nicolás Cabrera 9, 28049, Madrid, Spain. (1)
Leibniz Institute on Aging – Fritz Lipmann Institute (FLI), Beutenbergstrasse 11, 07745 Jena, Germany (1)
Macquarie University, North Ryde, Sydney Australia Faculty of Science and Engineering Deparment of Chemistry and Biomolecular Science (1)

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Single cell lipidomics of adherent gut epithelial cell lines Caco2 and HT29-MTX reveals a metabolic switch

Raw MS data files for the CaCo02 and HT29-MTX single cells isolated using the Yokogawa SS2000 for the research article 'Single cell lipidomics of adherent gut epithelial cell lines Caco2 and HT29-MTX reveals a metabolic switch'

2026-03-18 | MTBLS14074 | MetaboLights

RNA-sequencing of mRNAs from control and CAP-D3 deficient Salmonella infected HT-29 cells

BACKGROUND & AIMS- More frequent interaction of bacteria with the colonic epithelium is associated with ulcerative colitis (UC). The identities of all proteins which promote bacterial clearance in colonic epithelial cells are unknown. Previously, we discovered that dCAP-D3 (Chromosome Associated P...

ORGANISM(S): Homo sapiens

2015-09-15 | E-GEOD-62520 | biostudies-arrayexpress

Expression data for HT29 cells treated with 5-aza-deoxy-cytidine [Affymetrix]

The RNA samples from HT-29 (ATCC) colon cancer cell line were reverse transcribed into cDNAs and categorized in 3 groups with different concentrations of 5-aza-deoxy-cytidine (5-Aza); in each group three replicative 150 mm cultures were treated with: 1) dimethyl sulfoxide (vehicle alone, 0 Î¼M 5-Aza...

ORGANISM(S): Homo sapiens

2013-09-17 | E-GEOD-41364 | biostudies-arrayexpress

HT-29 cells treated with IFN-γ

Expression data from HT-29 human colon adenocarcinoma cells treated with IFN-γ for 24 hr Total RNA was isolated from HT-29 cells after 24h stimulation with 200 U ml-1 IFN-γ (Roche). The experiment was done on three biological replicates.

ORGANISM(S): Homo sapiens

2013-08-06 | E-GEOD-38516 | biostudies-arrayexpress

Expression data for HT29 cells treated with 5-aza-deoxy-cytidine [RNA-Seq]

The RNA samples from HT-29 (ATCC) colon cancer cell line were reverse transcribed to build cDNA libraries and categorized into 3 groups with different concentrations of 5-aza-deoxy-cytidine (5-Aza); in each group three replicative 150 mm cultures were treated with: 1) dimethyl sulfoxide (vehicle alo...

ORGANISM(S): Homo sapiens

2013-09-17 | E-GEOD-41586 | biostudies-arrayexpress

Homo sapiens strain:HT-29 Cell line

Homo sapiens strain:HT-29 Cell line Transcriptome or Gene expression

PRJNA982583 | ENA

Single-cell metabolic fingerprints discover a cluster of circulating tumor cells with distinct metastatic potential

Circulating tumor cells (CTCs) are recognized as direct seeds of metastasis. However, CTC count may not be the 'best' indicator of metastatic risk because their heterogeneity is generally neglected. In this study, we develop a molecular typing system to predict colorectal cancer metastasis potent...

2023-08-21 | MTBLS5028 | MetaboLights

Exon arrays from HT-29, MCF10A, and MDA-MB-436 cells

Expression data from HT-29 cells treated with IFN-Î³ for 24 hr, MCF10A cells, and MDA-MB-436 cells. Total RNA was isolated with the RNeasy Mini Kit (Qiagen). Sense-strand cDNA synthesis, terminal labeling, and hybridization were performed using Ambion WT Expression Kit (Applied Biosystems, P/N 44252...

ORGANISM(S): Homo sapiens

2013-08-06 | E-GEOD-45195 | biostudies-arrayexpress

RNA-seq analysis of HT-29, MCF10A, and MDA-MB-436 cells

RNA-seq data from HT-29 cells treated with IFN-M-NM-3 for 24 hr, MCF10A cells, and MDA-MB-436 cells. mRNA profiles of HT-29, MCF10A, and MDA-MB-436 were generated by deep sequencing using Illumina HiSeq 2000. All RNA sequencing data was generated by the Genomics Services Lab at the HudsonAlpha Insti...

ORGANISM(S): Homo sapiens

2013-08-06 | E-GEOD-45258 | biostudies-arrayexpress

CDK8 knockdown in HT-29 cells and CDK8 & MED12 knockdown in R1 cells

This SuperSeries is composed of the following subset Series: GSE30815: CDK8 knockdown in HT-29 human colon cancer cells GSE30816: CDK8 and MED12 knockdown in R1 mouse ES cells Refer to individual Series

ORGANISM(S): Mus musculus

2012-03-05 | E-GEOD-30817 | biostudies-arrayexpress

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