Ht-29 cells - OmicsDI

Show results for

Unknown (1233)
Transcriptomics (261)
Genomics (239)
Proteomics (50)
Metabolomics (10)
Genomic (1)
Other (1)

Organisms

Homo sapiens (278)
Aerococcus urinae NBRC 15544 = CCUG 36881 (40)
Andropogon gerardi (40)
Bacteria (40)
Bartonella quintana JK 31 (40)
Burkholderia ubonensis MSMB22 (40)
Canis lupus familiaris (40)
Cnidaria (40)
Ectopseudomonas oleovorans CECT 5344 (40)
Mus musculus (18)
Bifidobacterium bifidum (1)
Vibrio vulnificus (1)
Streptomyces venezuelae (1)
Candida albicans (1)
Mus musculus cytomegalovirus 2 (1)
Vibrio vulnificus MO6-24/O (1)
Betapolyomavirus macacae (1)
human gammaherpesvirus 4 (1)
JC polyomavirus (1)
Merkel cell polyomavirus (1)
Betapolyomavirus hominis (1)
Human alphaherpesvirus 2 (1)
Human alphaherpesvirus 1 (1)
Human gammaherpesvirus 8 (1)
Murid gammaherpesvirus 4 (1)
Murid betaherpesvirus 1 (1)
Human immunodeficiency virus 1 (1)
Clostridium perfringens (1)
Human betaherpesvirus 5 (1)
Rattus norvegicus (1)

Organisms

Homo sapiens (158)
Mus musculus (8)
Propionibacterium freudenreichii (1)
Clostridium perfringens (1)
Bacillus cereus (1)

Repository

ENA (212)
biostudies-arrayexpress (177)
geo (109)
pride (40)
MetaboLights (10)
EGA (5)
iProX (4)
MassIVE (3)
jPOST (2)
dbGaP (1)

Tissue

Cell culture (15)
Epithelial cell (6)
Colon (5)
Brain (3)
Colon epithelial cell (3)
Colonic cancer cell line (2)
HT-29 cell (2)
Blood (1)
Blood cell (1)
Cell suspension culture (1)
Dendritic cell (1)
Fibroblast (1)
Keratinocyte (1)
Malignant cell (1)
Neuron (1)
Permanent cell line cell (1)
Stem cell (1)
T cell (1)
Trophozoite (1)
Whole body (1)

Disease

Colon cancer (10)
Colorectal adenocarcinoma (3)
Colon adenocarcinoma (2)
Adenoma (1)
Maligant fibrousd histiocytoma post larynx carcinoma (1)
Colorectal cancer (1)
Colorectal carcinoma (1)
Colonic adenocarcinoma (1)
Alzheimer's disease (1)
Disease free (1)
Obesity (1)
Overweight (1)
Prostate adenocarcinoma (1)

Technology Type

Mass Spectrometry (40)
Shotgun proteomics (26)
Mass spectrometry (8)
Bottom-up proteomics (5)
Data-dependent acquisition (4)
SWATH MS (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Mass spectrometry assay (2)
Illumina HiSeq 2500 (1)
All-ion fragmentation (1)
Data-independent acquisition (1)
Gel-based experiment (1)

Instrument Platform

Illumina HiSeq 4000 (7)
Liquid Chromatography MS - positive - reverse phase (7)
Liquid Chromatography MS - negative - reverse phase (5)
Illumina NovaSeq 6000 (4)
Illumina MiSeq (3)
Illumina HiSeq 2000 (3)
NA (2)
HiSeq X Ten (2)
NextSeq 500 (2)
PCR machine; AMPure XP beads; TruSeq Stranded mRNA stranded prep. kit (1)
PCR machine; Superscript II polymerase Kit (Invitrogen); PCR machine; AMPure XP beads; TruSeq stranded mRNA sample prep kit.; TruSeq Stranded mRNA stranded prep. kit (1)
Centrifuge 5424R (Eppendorf); miRNeasy Mini Kit (Qiagen); TURBO^TM DNase (Ambion); Bioanalyser (Agilent) (1)
Centrifuge 5424R (Eppendorf); RNAprotect Bacteria Reagent (Qiagen); Cell culture dish (Nunc) (1)
Centrifuge 5424R (Eppendorf); RNAprotect Bacteria Reagent (Qiagen) (1)
PCR machine; MICROBExpress kit (Ambion); TruSeq Stranded mRNA stranded prep. kit (1)
PCR machine; AMPure XP beads; TruSeq stranded mRNA sample prep. kit. (1)
Illumina Genome Analyzer IIx (1)
NextSeq 2000 (1)
Illumina iSeq 100 (1)
DNBSEQ-G400 (1)
Illumina HiSeq 1500 (1)
NanoACQUITY UPLC (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
Synapt G2-S HDMS (1)
Matrix-assisted laser desorption-ionisation imaging MS - (1)
Liquid Chromatography MS - Alternating (LC-MS (Alt)) (1)
MS Imaging - (1)

Publication Date

2013 (34)
2014 (27)
2022 (26)
2016 (24)
2015 (23)
2012 (21)
2026 (20)
2023 (18)
2011 (18)
2010 (18)
2024 (17)
2021 (17)
2020 (16)
2009 (15)
2025 (13)
2017 (12)
2019 (8)
2018 (7)
2008 (6)
2007 (2)
2005 (1)

CHEBI ID

CHEBI:64563 (3)
CHEBI:66860 (2)
CHEBI:145255 (2)
CHEBI:67058 (2)
CHEBI:64517 (2)
CHEBI:64566 (2)
CHEBI:36023 (2)
CHEBI:17858 (2)
CHEBI:16856 (2)
CHEBI:36313 (2)
CHEBI:16958 (2)
CHEBI:64294 (2)
CHEBI:17568 (2)
CHEBI:17509 (2)
CHEBI:53486 (2)
CHEBI:16919 (2)
CHEBI:72737 (2)
CHEBI:64483 (2)
CHEBI:17712 (2)
CHEBI:18089 (2)
CHEBI:24835 (1)
CHEBI:48591 (1)
CHEBI:39270 (1)
CHEBI:24059 (1)
CHEBI:50917 (1)
CHEBI:24402 (1)
CHEBI:32955 (1)
CHEBI:36735 (1)
CHEBI:38776 (1)
CHEBI:59659 (1)

Metabolite Name

Oxidized glutathione (2)
Docosapentaenoic acid (2)
Uracil (2)
Vaccenic acid (2)
Glutathione (2)
7-Ketocholesterol (2)
Xanthine (2)
Creatine (2)
Hippuric acid (2)
Phosphatidylcholine 38:1 (1)
Cycloartanols and derivatives (1)
Miscellaneous mixed metal/non-metals (1)
N-acylpiperidines (1)
Naphthofurans (1)
Fluorenes (1)
Oxasteroids and derivatives (1)
Galanthamine-type amaryllidaceae alkaloids (1)
Glycosphingolipids (1)
Aristolactams (1)
Oxirane carboxylic acids and derivatives (1)
Bilirubins (1)
Imidazoquinolines (1)
Pyrenes (1)
Phenylpyridines (1)
Organic nitro compounds (1)
Methylpyridines (1)
Heteroaromatic compounds (1)
Phenanthrolines (1)
Bisphosphonates (1)
Phosphonic acid esters (1)

First Public Date

2014 (33)
2024 (30)
2026 (23)
2025 (19)
2022 (19)
2021 (17)
2023 (13)
2020 (12)
2018 (11)
2015 (11)
2017 (7)
2019 (6)
2016 (6)
2013 (5)

Classification

bacteria (2)

Modification

15.994915 (2)
227.126991 (1)
57.021464 (1)
9.030194 (1)

Study type

Transcription profiling by array (119)
RNA-seq of coding RNA (22)
ChIP-seq (5)
DNA-seq (4)
Transcription profiling by RT-PCR (3)
Other (3)
RNAi profiling by array (2)
Comparative genomic hybridization by array (2)
Exome sequencing (2)
MicroRNA profiling by array (2)
Methylation profiling by high throughput sequencing (2)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
Cell line - One-color microarray (1)
ChIP-chip by array (1)
4C (1)
Methylation profiling by array (1)
CUT&RUN (1)
Genotyping by high throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of non coding RNA (1)

Release Date

2023 (147)
2022 (128)
2025 (123)
2021 (122)
2020 (117)
2019 (102)
2018 (83)
2024 (82)
2016 (67)
2015 (66)
2017 (65)
2014 (63)
2013 (59)
2012 (41)
2011 (36)
2009 (30)
2010 (28)
2026 (16)
2008 (16)
2005 (6)
2007 (4)
2006 (2)
2003 (2)
1998 (2)
2002 (1)
2000 (1)
1999 (1)

Lab affiliation

Proteomics Mass Spectrometry, University of Tasmania (2)
Proteomics Unit, IMIBIC, Reina Sofía University Hospital, University of Córdoba, Córdoba, Spain (2)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (1)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute for Biomedical Research (1)
Bertozzi Lab Department of Chemistry 380 Roth Way MC: 5080 Stanford CA 94305-4401 (1)
Biomedical Proteomics Platform, Department of Health Sciences and Technology, ETH Zurich, 8093 Zurich, Switzerland Institute of Molecular Systems Biology at the Department of Biology, ETH Zurich, Zurich 8093, Switzerland (1)
Center of Neurodegenerative Diseases (1)
Chemistry I, Department of Medical Biochemistry and Biophysics, Karolinska Institutet SE 17177 Stockholm, Sweden. Department of Pharmacological & Technological Chemistry, I.M. Sechenov First Moscow State Medical University, Moscow, 119146, Russia. (1)
China Pharmaceutical University (1)
D.Sc., associate professor Head of Laboratory of Genetic Engineering Research Institute of Physical-Chemical Medicine (1)
Departament of Molecular Biologi and Biochemistry, Faculty of Sciences, University of Malaga, 29071 Malaga, Spain (1)
Department of Biochemistry and Molecular Biology, University of Southern Denmark (1)
Department of Biochemistry, Faculty of Biological Science, Tarbiat Modares University, Tehran, Iran (1)
Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School; Boston, MA, United States (1)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02215, USA (1)
Departments of Immunology and Microbiology, Chemistry, Scripps Research, La Jolla, California 92037, United States (1)
Faculty of Chemistry, Chair of Drug and Cosmetics Biotechnology, Warsaw University of Technology, Warsaw, Poland (1)
Faculty of Medicine, University of Maribor, Slovenia Faculty of Chemistry and Chemical Engineering, University of Maribor, Slovenia (1)
Immune monitoring lab Department of Immunohematology and Blood transfusion Leiden University Medical Center (LUMC) The Netherlands (1)
Institute of Diagnostic and Interventional Radiology, Jena University Hospital – Friedrich Schiller Uni-versity Jena, Am Klinikum 1, D-07740 Jena, Germany (1)
Intravacc, Antonie van Leeuwenhoeklaan 9, 3721 MA Bilthoven, The Netherlands (1)
Laboratory of Foodomics, Institute of Food Science Research (CIAL, CSIC), Calle Nicolás Cabrera 9, 28049, Madrid, Spain (1)
Laboratory of Foodomics, Institute of Food Science Research (CIAL, CSIC), Calle Nicolás Cabrera 9, 28049, Madrid, Spain. (1)
Leibniz Institute on Aging – Fritz Lipmann Institute (FLI), Beutenbergstrasse 11, 07745 Jena, Germany (1)
MOE Key Laboratory of Tumor Molecular Biology and Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, Institute of Life and Health Engineering, College of Life Science and Technology, Jinan University, Guangzhou 510632, China. (1)
Macquarie University, North Ryde, Sydney Australia Faculty of Science and Engineering Deparment of Chemistry and Biomolecular Science (1)
Medical Malacology, Theodore Bilharz Research Institute, Giza, Egypt (1)
Metabolomics and Proteomics Core, Helmholtz zentrum Muenchen (1)
Northeastern University, 360 Huntington Ave., Boston, Massachusetts 02115, United StatesBarnett Institute of Chemical and Biological Analysis, Department of Chemistry and Chemical Biology, (1)
Nuffield department of Surgical Sciences, University of Oxford UK (1)

Previous page
1 / 180
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 180
Next page

Sort by:

Relevance

Page size

Single cell lipidomics of adherent gut epithelial cell lines Caco2 and HT29-MTX reveals a metabolic switch

Raw MS data files for the CaCo02 and HT29-MTX single cells isolated using the Yokogawa SS2000 for the research article 'Single cell lipidomics of adherent gut epithelial cell lines Caco2 and HT29-MTX reveals a metabolic switch'

2026-03-18 | MTBLS14074 | MetaboLights

RNA-sequencing of mRNAs from control and CAP-D3 deficient Salmonella infected HT-29 cells

BACKGROUND & AIMS- More frequent interaction of bacteria with the colonic epithelium is associated with ulcerative colitis (UC). The identities of all proteins which promote bacterial clearance in colonic epithelial cells are unknown. Previously, we discovered that dCAP-D3 (Chromosome Associated P...

ORGANISM(S): Homo sapiens

2015-09-15 | E-GEOD-62520 | biostudies-arrayexpress

HT-29 cells treated with IFN-γ

Expression data from HT-29 human colon adenocarcinoma cells treated with IFN-γ for 24 hr Total RNA was isolated from HT-29 cells after 24h stimulation with 200 U ml-1 IFN-γ (Roche). The experiment was done on three biological replicates.

ORGANISM(S): Homo sapiens

2013-08-06 | E-GEOD-38516 | biostudies-arrayexpress

Expression data for HT29 cells treated with 5-aza-deoxy-cytidine [Affymetrix]

The RNA samples from HT-29 (ATCC) colon cancer cell line were reverse transcribed into cDNAs and categorized in 3 groups with different concentrations of 5-aza-deoxy-cytidine (5-Aza); in each group three replicative 150 mm cultures were treated with: 1) dimethyl sulfoxide (vehicle alone, 0 Î¼M 5-Aza...

ORGANISM(S): Homo sapiens

2013-09-17 | E-GEOD-41364 | biostudies-arrayexpress

Expression data for HT29 cells treated with 5-aza-deoxy-cytidine [RNA-Seq]

The RNA samples from HT-29 (ATCC) colon cancer cell line were reverse transcribed to build cDNA libraries and categorized into 3 groups with different concentrations of 5-aza-deoxy-cytidine (5-Aza); in each group three replicative 150 mm cultures were treated with: 1) dimethyl sulfoxide (vehicle alo...

ORGANISM(S): Homo sapiens

2013-09-17 | E-GEOD-41586 | biostudies-arrayexpress

RNA-seq analysis of HT-29, MCF10A, and MDA-MB-436 cells

RNA-seq data from HT-29 cells treated with IFN-M-NM-3 for 24 hr, MCF10A cells, and MDA-MB-436 cells. mRNA profiles of HT-29, MCF10A, and MDA-MB-436 were generated by deep sequencing using Illumina HiSeq 2000. All RNA sequencing data was generated by the Genomics Services Lab at the HudsonAlpha Insti...

ORGANISM(S): Homo sapiens

2013-08-06 | E-GEOD-45258 | biostudies-arrayexpress

Exon arrays from HT-29, MCF10A, and MDA-MB-436 cells

Expression data from HT-29 cells treated with IFN-Î³ for 24 hr, MCF10A cells, and MDA-MB-436 cells. Total RNA was isolated with the RNeasy Mini Kit (Qiagen). Sense-strand cDNA synthesis, terminal labeling, and hybridization were performed using Ambion WT Expression Kit (Applied Biosystems, P/N 44252...

ORGANISM(S): Homo sapiens

2013-08-06 | E-GEOD-45195 | biostudies-arrayexpress

CDK8 knockdown in HT-29 cells and CDK8 & MED12 knockdown in R1 cells

This SuperSeries is composed of the following subset Series: GSE30815: CDK8 knockdown in HT-29 human colon cancer cells GSE30816: CDK8 and MED12 knockdown in R1 mouse ES cells Refer to individual Series

ORGANISM(S): Mus musculus

2012-03-05 | E-GEOD-30817 | biostudies-arrayexpress

CDK8 knockdown in HT-29 human colon cancer cells

Transcriptional profiling of HT-29 human colon cancer cells transfected with non-targeting control (NTC) siRNA and two different siRNA sequences against CDK8 (siCDK8-1 and siCDK8-2). Three condition experiment comparing siNTC versus siCDK8-1 and siCDK8-2 after 3 days (3 biological replicates each); ...

ORGANISM(S): Homo sapiens

2012-03-05 | E-GEOD-30815 | biostudies-arrayexpress

Characterization of HT-29 cells cultured in NanoCulture plates

To characterize cells cultured in 3D culture system using NanoCulture plates (NCPs) (Scivax) and in 2D culture, we examined gene expression in HT-29 cells on day 1 or day 7 on NCPs or 2D monolayer culture, using DNA microarrays. From our study, tumour cells grown on NCPs were morphologically differe...

ORGANISM(S): Homo sapiens

2010-08-25 | E-GEOD-23773 | biostudies-arrayexpress

Previous page
1 / 180
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 180
Next page

Sort by:

Relevance

Page size

1796 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

CHEBI ID

Metabolite Name

First Public Date

Classification

Modification

Study type

Release Date

Lab affiliation

Tags

OmicsDI is part of the ELIXIR infrastructure

Tweets