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TranscriptomicsPrediction of acute multiple sclerosis relapses by transcription levels of peripheral blood cells
Background: The ability to predict the spatial frequency of relapses in multiple sclerosis (MS) would enable treating physicians to decide when to intervene more aggressively and to plan clinical trials more accurately. Methods: In the current study our objective was to determine if subsets of gene...
ORGANISM(S): Homo sapiens 
2009-07-15 | E-GEOD-15245 | biostudies-arrayexpress
MetabolomicsMetabolic Dynamics of In Vitro CD8+ T Cell Activation

CD8+ T cells detect and kill virally infected or cancerous cells. When activated from their naïve state, T cells undergo a complex transition, including major metabolic reprogramming. Detailed resolution of metabolic dynamics of a wide range of metabolites is needed to advance the field of immuno...

2021-06-02 | MTBLS2145 | MetaboLights
ProteomicsDnj4HA AP-MS in Cryptococcus neoformans
Proteins which act as histone chaperones ensure genomic integrity during routine processes such as DNA replication and transcription as well as DNA repair upon damage. Herein, we identify a nuclear J domain protein, Dnj4, which interacts with histones 3 and 4 as well as Hsp71 as demonstrated in an A...
ORGANISM(S): Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) (Filobasidiella neoformans var. grubii) 
2021-12-15 | PXD028087 | Pride
Histone Co-chaperone Cryptococcus neoformans J domain protein 
ProteomicsO-GlcNac Mapping of WNK4 KLHL3 using LC-MS-EThCD, Boyce Lab Duke Univ
In-gel trypsin digested proteins (WNK4 and KLHL3) subjected to LC-MS/MS on a Fusion Lumos collecting data with a ETHcD bottoms-up proteomics method.
ORGANISM(S): Homo sapiens (Human) 
2025-09-22 | PXD055905 | Pride
Glcnac Lumos 
MetabolomicsGNPS - GC-MS metabolomes of fecal samples from zoo mammals
GC-MS single quad metabolomes of fecal samples from 101 individual animals from 25 mammalian species, in collaboration with a zoo. Includes fecal samples, dietary samples, and quality control samples. See linked datasets: MSV000086131, https://www.ncbi.nlm.nih.gov/bioproject/PRJNA693262/ Reference:...
ORGANISM(S): Mammalia (ncbitaxon:40674) 
2019-05-26 | MSV000083859 | GNPS
UnknownA Ratiometric and Colorimetric Hemicyanine Fluorescent Probe for Detection of SO2 Derivatives and Its Applications in Bioimaging.
Not available
S-EPMC6865185 | biostudies-literature
ProteomicsReproducible Workflow for Multiplexed Deep-Scale Proteome and Phosphoproteome Analysis of Tumor Tissues by Liquid Chromatography-Mass Spectrometry

Mertins P, Tang LC, Krug K, Clark DJ, Gritsenko MA, Chen L, Clauser KR, Clauss TR, Shah P, Gillette MA, et al., Nat Protoc. 2018 Jul 9. doi: 10.1038/s41596-018-0006-9

Here we present an optimized workflow for gl...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606) Mus Musculus (ncbitaxon:10090) 
2019-08-30 | MSV000084265 | MassIVE
ProteomicsRSV nonstructural protein 1 (NS1) HDX LC-MS data
Raw liquid chromatography-mass spectrometry (LC-MS) datafiles acquired for hydrogen-deuterium exchange (HDX) of RSV nonstructural protein 1 (NS1)
ORGANISM(S): Human Respiratory syncytial virus 9320 
2025-05-07 | PXD054005 | Pride
Rsv ns1 hdx-ms 
ProteomicsTemporal proteomic analysis of BK polyomavirus infection reveals virus-induced G2 arrest and highly effective evasion of innate immune sensing
BK polyomavirus (BKPyV) is a small DNA virus that establishes a life-long persistent infection in the urinary tract of most people. BKPyV is known to cause severe morbidity in renal transplant recipients and can lead to graft rejection. The simple 5.2 kilobase pair dsDNA genome expresses just seven ...
ORGANISM(S): Homo sapiens (Human) BK polyomavirus MM 
2019-05-23 | PXD013940 | Pride
Quantitative proteomics  tandem mass tag  systems virology  polyomavirus  interferon  immune evasion  innate immunity  cell cycle 
ProteomicsTargeted and non-targeted mass spectrometry to explore the chemical diversity of the genus Gambierdiscus in the Atlantic Ocean
The 15 strains of Gambierdiscus were cultivated in four separate laboratories. Each laboratory grew their available strains (see sample metadata) in addition to the G. australes strain AUS S080911_1 isolated from Pacific Ocean. Irradiance (70-100 umol photons m-2 s-1) and light/dark cycle (12h:12h)...
ORGANISM(S): Gambierdiscus Silvae (ncbitaxon:1550089) Gambierdiscus Carolinianus (ncbitaxon:864182) Gambierdiscus Australes (ncbitaxon:439317) Gambierdiscus Belizeanus (ncbitaxon:439316) Gambierdiscus Excentricus (ncbitaxon:986170) Gambierdiscus Caribaeus (ncbitaxon:864185) 
2024-02-26 | MSV000094172 | MassIVE
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