Hu Yang Y - OmicsDI

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Unknown (11849)
Proteomics (278)
Transcriptomics (86)
Metabolomics (44)
Genomics (12)
Multiomics (1)

Organisms

Homo sapiens (86)
Mus musculus (52)
Saccharomyces cerevisiae (7)
Arabidopsis thaliana (6)
Rattus norvegicus (5)
Severe acute respiratory syndrome coronavirus 2 (5)
Oryza sativa (4)
Oryza sativa Indica Group (2)
Streptococcus pneumoniae (2)
Rattus rattus (2)
Babesia microti (2)
Macaca fascicularis fascicularis (2)
Acromyrmex echinatior (1)
Bos grunniens (1)
Brassica oleracea (1)
Camponotus floridanus (1)
Harpegnathos saltator (1)
Tetrahymena thermophila (1)
Leptospira interrogans serovar Lai str. 56601 (1)
Leishmania major (1)
Macaca mulatta (1)
Clostridium acetobutylicum (1)
Schizosaccharomyces pombe (1)
Setaria italica (1)
Sus scrofa (1)
Aspergillus flavus NRRL3357 (1)
Bombyx mori (1)
Bos taurus (1)
Candida albicans (1)
Escherichia coli (1)

Organisms

Homo sapiens (1)

Repository

pride (165)
iProX (105)
biostudies-arrayexpress (93)
MetaboLights (43)
MassIVE (6)
EGA (3)
geo (1)
GNPS (1)
PAXDB (1)
PeptideAtlas (1)
ENA (1)

Tissue

Cell culture (38)
Epithelial cell (15)
Liver (10)
Lung (8)
Blood serum (7)
Leaf (7)
Blood plasma (5)
Permanent cell line cell (5)
Blood (4)
Skin (4)
Stem cell (4)
T cell (4)
Testis (4)
Brain (3)
Heart (3)
Hepatocyte (3)
Adrenal adenoma cell (2)
Bone marrow (2)
Byssus (2)
Colon (2)
HeLa cell (2)
Kidney (2)
Macrophage (2)
Plant cell (2)
Stomach (2)
Whole body (2)
Adipose tissue (1)
B cell (1)
HCT-116 cell (1)
T-cell acute lymphoblastic leukemia cell (1)

Disease

Disease free (6)
Breast cancer (5)
Acute leukemia (4)
Colon cancer (4)
Brain glioblastoma multiforme (2)
Hepatocellular carcinoma (2)
Melanoma (2)
Prostate adenocarcinoma (2)
Porphyria NOS (1)
Neurofibromatosis type 1 (1)
Normal (1)
Adult hepatocellular carcinoma (1)
Alzheimer's disease (1)
Carcinoma (1)
Cardiovascular system disease (1)
Cervix carcinoma (1)
Chronic obstructive pulmonary disease (1)
Endometrial Endometrioid Adenocarcinoma (1)
Human immunodeficiency virus infectious disease (1)
Hyperhomocysteinemia (1)
IgA glomerulonephritis (1)
Lung carcinoma (1)
Malignant neoplasm of ovary (1)
Multiple myeloma (1)
Neuropathic pain (1)
Non-small cell lung carcinoma (1)
Osteoporosis (1)
Stomach disease (1)

Technology Type

Mass Spectrometry (165)
Shotgun proteomics (91)
Mass spectrometry (37)
Bottom-up proteomics (24)
Data-dependent acquisition (17)
Gel-based experiment (11)
Data-independent acquisition (8)
Affinity purification coupled with mass spectrometry proteomics (7)
SWATH MS (6)
Proteogenomics (5)
Mass spectrometry assay (4)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Top-down proteomics (4)
NMR spectroscopy (2)
Immunopeptidomics (2)
Mass spectrometry imaging (2)
Illumina HiSeq 2000 (1)
Affinity proteomics (1)
DiaPASEF (1)
MSE (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (27)
Liquid Chromatography MS - negative - reverse phase (21)
Liquid Chromatography MS - negative - hilic (4)
GenePix Professional 4200A [Axon Instruments] (3)
Liquid Chromatography MS - positive - hilic (3)
Illumina NovaSeq 6000 (2)
Q Exactive (2)
Q Exactive HF (2)
6540 Q-TOF LC/MS (Agilent) (2)
Bruker (2)
Liquid Chromatography MS - positive (2)
Illumina HiSeq 2000 (1)
LTQ FT (1)
MaXis (1)
MALDI LTQ Orbitrap (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)
Quattro micro API (Waters) (1)
Direct infusion MS - negative (1)
Agilent 5975E GC/MSD (Agilent) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Gas Chromatography MS - positive (1)
Direct infusion MS - positive (1)
5975C Series GC/MSD (Agilent) (1)
Xevo G2 QTOF (Waters) (1)
Liquid Chromatography MS - (1)
API 4000 QTRAP (AB Sciex) (1)

Publication Date

2022 (55)
2025 (55)
2023 (50)
2024 (42)
2021 (32)
2026 (30)
2014 (18)
2020 (17)
2019 (17)
2013 (16)
2018 (15)
2010 (12)
2005 (10)
2016 (9)
2015 (8)
2012 (8)
2011 (7)
2017 (5)
2009 (4)
2008 (2)
2007 (2)
2006 (2)

UNIPROT ID/AC

3BHS1_MACMU (1)
9544.ENSMMUP00000000029 (1)
9544.ENSMMUP00000000072 (1)
9544.ENSMMUP00000000075 (1)
9544.ENSMMUP00000000192 (1)
9544.ENSMMUP00000000231 (1)
9544.ENSMMUP00000000270 (1)
9544.ENSMMUP00000000273 (1)
9544.ENSMMUP00000000300 (1)
9544.ENSMMUP00000000331 (1)
9544.ENSMMUP00000000335 (1)
9544.ENSMMUP00000000399 (1)
9544.ENSMMUP00000000400 (1)
9544.ENSMMUP00000000529 (1)
9544.ENSMMUP00000000584 (1)
9544.ENSMMUP00000000645 (1)
9544.ENSMMUP00000000701 (1)
9544.ENSMMUP00000000740 (1)
9544.ENSMMUP00000000788 (1)
9544.ENSMMUP00000000800 (1)
9544.ENSMMUP00000000801 (1)
9544.ENSMMUP00000000832 (1)
9544.ENSMMUP00000000870 (1)
9544.ENSMMUP00000000898 (1)
9544.ENSMMUP00000000905 (1)
9544.ENSMMUP00000000981 (1)
9544.ENSMMUP00000001028 (1)
9544.ENSMMUP00000001049 (1)
9544.ENSMMUP00000001078 (1)
9544.ENSMMUP00000001171 (1)

CHEBI ID

CHEBI:16704 (12)
CHEBI:30769 (12)
CHEBI:15741 (11)
CHEBI:17750 (10)
CHEBI:30915 (10)
CHEBI:16811 (9)
CHEBI:28300 (9)
CHEBI:16708 (9)
CHEBI:16750 (9)
CHEBI:16196 (9)
CHEBI:17568 (9)
CHEBI:16027 (9)
CHEBI:17368 (9)
CHEBI:16709 (8)
CHEBI:16040 (8)
CHEBI:16870 (8)
CHEBI:16610 (8)
CHEBI:6650 (8)
CHEBI:18012 (8)
CHEBI:17596 (8)
CHEBI:17351 (8)
CHEBI:17992 (7)
CHEBI:17822 (7)
CHEBI:18237 (7)
CHEBI:30832 (7)
CHEBI:28842 (7)
CHEBI:28044 (7)
CHEBI:17015 (7)
CHEBI:17821 (7)
CHEBI:17154 (7)

Metabolite Name

Uridine (8)
Citric acid (6)
Betaine (5)
Methionine (5)
Cholic acid (5)
Serine (5)
N-Acetyl-L-phenylalanine (5)
Citrate (5)
Guanosine (5)
Sucrose (5)
Hypoxanthine (5)
Tris(2-butoxyethyl) phosphate (4)
Norvaline (4)
Uracil (4)
Taurine (4)
Deoxycholic acid (4)
Adenosine (4)
Spermidine (4)
Guanine (4)
Glutamine (4)
Adenine (4)
Xanthine (4)
Creatine (4)
Hippuric acid (4)
L-Tyrosine (4)
Inosine (4)
Beta-Caryophyllene (3)
Hepoxilin A3 (3)
6-[3]-ladderane-1-hexanol (3)
Calamendiol (3)

First Public Date

2015 (1)

Modification

6x(2)H labeled dimethylated L-arginine (1)

Study type

Transcription profiling by array (51)
RNA-seq of coding RNA (20)
Other (6)
ChIP-seq (5)
RNA-seq of non coding RNA (5)
Methylation profiling by high throughput sequencing (3)
Unknown experiment type (1)
Spatial transcriptomics by high-throughput sequencing (1)
Comparative genomic hybridization by array (1)

Release Date

2025 (2030)
2022 (1641)
2024 (1566)
2023 (1530)
2021 (1232)
2020 (890)
2019 (635)
2018 (513)
2017 (446)
2016 (362)
2026 (267)
2015 (254)
2014 (193)
2013 (110)
2012 (91)
2011 (64)
2010 (44)
2009 (20)
2008 (17)
2005 (12)
2006 (10)
2007 (7)
2003 (3)
2002 (3)
2004 (1)
2001 (1)

Lab affiliation

BGI Research (3)
Children's Hospital of Nanjing Medical University (2)
Department of Biochemistry and Structural Biology and Center for Innovative Drug Discovery School of Medicine, University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, TX 78229, United States (2)
Department of Clinical Laboratory, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, China. The Key Laboratory of Molecular Biology of Infectious Diseases designated by the Chinese Ministry of Education, Chongqing Medical University, Chongqing, China. (2)
Guangdong Pharmaceutical University (2)
Huazhong University of Science and Technology Union Shenzhen Hospital (2)
Institute of Immunology and Department of Orthopaedics of the Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang 310058, China (2)
Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College (2)
Institute of Translational Medicine, Zhejiang University School of Medicine, Zhejiang University (2)
National Taiwan Ocean University (2)
Shenzhen Hospital of Southern Medical University (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
The Second Affiliated Hospital Zhejiang University School of Medicine (2)
Zhejiang University (2)
the First Affiliated Hospital of Chongqing Medical University (2)
tsinghua university (2)
1 Cancer Institute, Xuzhou Medical University, Xuzhou, Jiangsu, China. 2 Center of Clinical Oncology, The Affiliated Hospital of Xuzhou Medical University, Xuzhou, China. 3 State Key Laboratory Jiangsu Center for the Collaboration and Innovation of Cancer Biotherapy, Cancer Institute, Xuzhou Medical University, Xuzhou, Jiangsu, China. (1)
1 Department of Cardiology, Zhongshan Hospital, Fudan University, Shanghai Institute of Cardiovascular Diseases, China. 2 Department of Cardiovascular Medicine, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China. (1)
1Department of Pathology, Johns Hopkins University, Baltimore, Maryland 21287, USA (1)
1F, Bldg A, No.18 Science Park Road, Life Science Park, Changping District, Beijing 102206, P. R. China (1)
AbbVie Bioresearch Center (1)
Anhui Province Key Laboratory of Medical Physics and Technology, Institute of Health and Medical Technology, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei, Anhui 230031, P. R. China University of Science and Technology of China, Hefei, Anhui 230026, P. R. China Hefei Cancer Hospital, Chinese Academy of Sciences, Hefei, Anhui 230031, P. R. China Precision Medicine Research Laboratory of Anhui Province, Hefei, Anhui 230088, P. R. China (1)
Anonymity for double-blind review (1)
Basic Forestry and Proteomics Research Center, Fujian Agriculture and Forestry University, China (1)
Beijing Institute of Pharmacology and Toxicology (1)
Beijing Key Laboratory of Antimicrobial Agents, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College (1)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
Cancer Science Institute of Singapore, National University of Singapore (1)
Cedars-Sinai Medical Center (1)
Center of Growth Metabolism and Aging, College of Life Sciences, Sichuan University, Chengdu, China. (1)

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Expression changes in Tetrahymena thermophila TRX1 and EZL2 gene knockouts and after hydroxyurea (HU) treatment

12 genome-wide microarrays to investigate the Tetrahymena thermophila gene expression changes in TRX1 and EZL2 gene knockout and hydroxyurea (HU) treatment conditions. For the TRR1 knockout (KO) condition, wild type (WT427) cells and TRX1 KO cells were cultured using 1XSPP, 30 degrees, 100 rpm shaki...

ORGANISM(S): Tetrahymena thermophila

2013-09-04 | E-GEOD-44990 | biostudies-arrayexpress

Transcriptome and metabolome changes in Chinese cedar during cold acclimation reveal the roles of flavonoids in needle discoloration and cold resistance

Cryptomeria fortunei growth and development are usually affected by low temperatures. Despite the evergreen nature of this species, most needles turn yellowish-brown in cold winters. The underlying discoloration mechanisms that cause this phenomenon in response to cold acclimation remain...

2022-08-12 | MTBLS3184 | MetaboLights

Characterization of meat quality traits, fatty acids and volatile compounds in Hu and Tan sheep.

Not available

S-EPMC9971989 | biostudies-literature

Frontoparietal paired associative stimulation versus single-site stimulation for generalized anxiety disorder: a pilot rTMS study.

Not available

S-EPMC9259432 | biostudies-literature

Not available

S-EPMC11618765 | biostudies-literature

A new species of Rhododendron (Ericaceae) from Guizhou, China.

Not available

S-EPMC9849097 | biostudies-literature