Huang Chen C - OmicsDI

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Unknown (16322)
Proteomics (483)
Transcriptomics (215)
Metabolomics (66)
Genomics (59)
Models (1)
Multiomics (1)

Organisms

Homo sapiens (235)
Mus musculus (78)
Arabidopsis thaliana (19)
Rattus norvegicus (8)
Oryza sativa (6)
Caenorhabditis elegans (4)
Drosophila melanogaster (4)
Ovis aries (3)
Gallus gallus (3)
Macaca mulatta (3)
Sus scrofa (3)
Saccharomyces cerevisiae SK1 (2)
Bombyx mori (2)
Aggregatibacter actinomycetemcomitans (2)
Danio rerio (2)
Spalax carmeli (1)
Coccinella septempunctata (1)
Aspergillus terreus (1)
Nannospalax galili (1)
Apis mellifera scutellata (1)
Camellia sinensis (1)
Nannochloropsis oceanica (1)
Pteropus alecto (1)
Rhodopseudomonas palustris (1)
Mustela putorius furo (1)
Lilium longiflorum (1)
Clonorchis sinensis (1)
Brassica napus (1)
Yersinia pestis (1)
Mus musculus domesticus (1)

Organisms

Homo sapiens (1)

Repository

pride (320)
biostudies-arrayexpress (243)
iProX (150)
MetaboLights (66)
EGA (30)
MassIVE (9)
jPOST (3)
Cell Collective (1)
PanoramaPublic (1)
ENA (1)

Tissue

Cell culture (88)
Epithelial cell (30)
Liver (18)
Leaf (16)
Lung (10)
Blood (9)
Brain (9)
Plant cell (9)
Testis (9)
Blood plasma (8)
Whole body (8)
Embryo (6)
Root (6)
Blood cell (5)
Blood serum (5)
Hepatocyte (5)
Kidney (5)
Permanent cell line cell (5)
B cell (4)
Embryonic stem cell (4)
HeLa cell (4)
Spleen (4)
Stem cell (4)
Bone marrow (3)
Colon (3)
Early embryonic cell (3)
Fibroblast (3)
Saliva (3)
Skin (3)
Stomach (3)

Disease

Disease free (12)
Colon cancer (5)
Acute leukemia (4)
Breast cancer (4)
Cervix carcinoma (3)
Hepatocellular carcinoma (3)
Non-small cell lung carcinoma (3)
Renal cell carcinoma (3)
Stomach cancer (3)
Liver carcinoma (2)
Lung adenocarcinoma (2)
Lung cancer (2)
Melanoma (2)
Neuroblastoma (2)
Pneumonia (2)
Prostate adenocarcinoma (2)
Severe acute respiratory syndrome (2)
Abdominal aortic aneurysm (1)
Alzheimer's disease (1)
Aortic dissection (1)
Barrett's esophagus (1)
Brain cancer (1)
Carcinoma (1)
Cardiovascular system disease (1)
Cholangiocarcinoma (1)
Chronic kidney disease (1)
Chronic myeloid leukemia (1)
Diffuse gastric cancer (1)
Polycystic Kidney (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (320)
Shotgun proteomics (142)
Bottom-up proteomics (62)
Mass spectrometry (57)
Data-dependent acquisition (37)
Affinity purification coupled with mass spectrometry proteomics (23)
Gel-based experiment (21)
Data-independent acquisition (16)
Top-down proteomics (13)
Chemical cross-linking coupled with mass spectrometry proteomics (10)
Mass spectrometry assay (8)
SWATH MS (8)
Proteogenomics (7)
Affinity proteomics (3)
All-ion fragmentation (3)
SRM/MRM (3)
Immunopeptidomics (2)
Olink affinity proteomics (2)
Illumina HiSeq 2000 (ILLUMINA), Illumina HiSeq 1500 (ILLUMINA) (1)
NextSeq 550, ILLUMINA (1)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
NMR spectroscopy (1)
HDMSE (1)
MSE (1)
Mass spectrometry imaging (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (27)
Liquid Chromatography MS - negative - reverse phase (24)
Liquid Chromatography MS - positive - hilic (7)
Liquid Chromatography MS - negative - hilic (6)
Liquid Chromatography MS - (4)
Illumina NovaSeq 6000 (3)
Illumina HiSeq 2000 (3)
LTQ Orbitrap Elite (3)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (3)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (3)
Xevo G2 QTOF (Waters) (3)
Illumina HiSeq 2500 (2)
Illumina HiSeq 4000 (2)
Orbitrap Fusion Lumos (2)
TOF Pegasus HT (LECO) (2)
Liquid Chromatography Tandem MS (LC-MS/MS) (2)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - alternating - hilic (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Affymetrix Array scanner (1)
Affymetrix hybridization station (1)
GenePix 4000B [Axon Instruments] (1)
LTQ (1)
Q Exactive (1)
Q Exactive HF (1)
Q Exactive Plus (1)
Liquid Chromatography MS - Negative - HILIC (1)
Liquid Chromatography MS - Positive - HILIC (1)
Xevo TQ MS (Waters) (1)
Liquid Chromatography MS - alternating – hilic (1)

Publication Date

2024 (90)
2022 (86)
2025 (83)
2021 (75)
2026 (65)
2023 (60)
2014 (45)
2013 (41)
2012 (35)
2020 (34)
2015 (30)
2011 (28)
2019 (27)
2016 (25)
2010 (20)
2018 (19)
2017 (12)
2009 (8)
2008 (3)
2007 (2)
2005 (2)
2006 (1)

CHEBI ID

CHEBI:17895 (21)
CHEBI:17368 (20)
CHEBI:16828 (18)
CHEBI:15756 (17)
CHEBI:15891 (16)
CHEBI:16335 (16)
CHEBI:15354 (16)
CHEBI:17295 (16)
CHEBI:17596 (16)
CHEBI:30769 (16)
CHEBI:16708 (15)
CHEBI:16704 (15)
CHEBI:18050 (15)
CHEBI:17568 (15)
CHEBI:7916 (15)
CHEBI:16467 (15)
CHEBI:16750 (15)
CHEBI:16235 (15)
CHEBI:16919 (15)
CHEBI:17203 (14)
CHEBI:18019 (14)
CHEBI:16737 (14)
CHEBI:16347 (14)
CHEBI:17351 (14)
CHEBI:17748 (13)
CHEBI:17405 (13)
CHEBI:15971 (13)
CHEBI:32816 (13)
CHEBI:16610 (12)
CHEBI:27823 (12)

Metabolite Name

Hypoxanthine (18)
Adenine (16)
Uracil (15)
Guanine (15)
Creatinine (15)
L-Tyrosine (15)
Inosine (15)
Guanosine (14)
L-Proline (13)
L-Arginine (13)
Adenosine (13)
Cytosine (13)
Uridine (13)
Creatine (13)
Choline (12)
Spermidine (12)
L-Phenylalanine (12)
L-Histidine (11)
Indole (11)
L-Tryptophan (11)
Taurine (10)
Riboflavin (10)
L-Glutamine (10)
Azelaic acid (10)
L-Isoleucine (10)
L-Methionine (10)
Betaine (9)
Thymine (9)
Piperidine (9)
Xanthosine (9)

First Public Date

2023 (1)

Modification

Not available (1)

Study type

Transcription profiling by array (131)
RNA-seq of coding RNA (49)
ChIP-seq (20)
Comparative genomic hybridization by array (9)
Methylation profiling by high throughput sequencing (8)
RNA-seq of non coding RNA (7)
Other (6)
Methylation profiling by array (6)
Unknown experiment type (3)
ChIP-chip by tiling array (2)
MicroRNA profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (2603)
2022 (2227)
2024 (2073)
2023 (1993)
2021 (1850)
2020 (1255)
2019 (847)
2018 (748)
2017 (612)
2016 (488)
2015 (449)
2026 (347)
2014 (316)
2013 (203)
2012 (179)
2011 (117)
2010 (89)
2009 (59)
2008 (43)
2007 (25)
2006 (13)
2005 (11)
2002 (4)
2003 (3)
2004 (2)
2001 (2)
2000 (2)
1999 (1)
1998 (1)
1997 (1)

Lab affiliation

Department of Cardiovascular Medicine, Center for Circadian Metabolism and Cardiovascular Disease, Southwest Hospital, Army Medical University; Chongqing, China. (4)
Guangzhou Medical University (4)
Huazhong Agricultural University (4)
Tsinghua University, China (4)
Affiliation of Qiutao Xu: State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, Guangxi University, Nanning 530004, China (3)
Department of Life Science, National Taiwan University (3)
Institute of Clinical Medicine in National Yang-Ming Chiao Tung University, Taiwan (Muh-Hwa Yang Lab) (3)
Key Laboratory of Tropical Marine Bio-resources and Ecology,South China Sea Institute of Oceanology, Chinese Academy of Sciences (3)
Leader of the Molecular and Systems Oncology Team in the Division of Molecular Pathology at The Institute of Cancer Research, London, UK (3)
Shanghaitech University (3)
State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Sun Yat-sen University Cancer Center, Guangzhou 510060, China (3)
Center for Stem Cell Biology and Tissue Engineering, Key Laboratory for Stem Cells and Tissue Engineering, Ministry of Education, Sun Yat-sen University, Guangzhou, Guangdong, China. (2)
College of Pharmacy, Jinan University, Guangzhou, China (2)
Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Department of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu 610041, China. (2)
Department of Pathology and Duke Cancer Institute, Duke University School of Medicine, Durham, NC 27710, USA (2)
Department of Radiation Oncology, Shanghai Proton and Heavy Ion Center, Fudan University Cancer Hospital, China (2)
Department of Urology, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, Guangdong, P. R. China (2)
Fudan University (2)
Icahn School of Medicine at Mount Sinai (2)
Institute of Biological Chemistry, Academia Sinica, Taipei, 115201, Taiwan Institute of Biochemical Sciences, National Taiwan University, Taipei, 106319, Taiwan International Institute for Sustainability with Knotted Chiral Meta Matter (SKCM2), Hiroshima University, Hiroshima, 739-8511, Japan (2)
Institute of Molecular and Cellular Biology, Department of Life Science, National Taiwan University, Taipei, Taiwan (2)
Institute of Molecular and Cellular Biology, National Taiwan University, Taipei, Taiwan (2)
Jinan University (2)
Key Laboratory of Modern Toxicology of Shenzhen, Shenzhen Center for Disease Control and Prevention, No. 8, Longyuan Road, Nanshan District, Shenzhen, China 518055. (2)
Mayo Clinic, Department of Oncology (2)
Shanghai Institute of Materia Medica, Chinese Academy of Sciences (2)
South China Sea Institute of Oceanology, Chinese Academy of Sciences (2)
State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China (2)
State Key Laboratory of Oncology in South China (2)

Tags

xref:PubMed:37095348 (1)

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Traditional Chinese Medicine Pien-Tze-Huang Inhibits Colorectal Cancer Growth and Immune Evasion by Reducing β-catenin Transcriptional Activity and PD-L1 Expression.

Not available

S-EPMC8850789 | biostudies-literature

Four species of spider genus Cheiracanthium C. L. Koch, 1839 (Araneae, Eutichuridae) from Jinggang Mountains, Jiangxi Province, China.

Not available

S-EPMC5990546 | biostudies-literature

Tetramethylpyrazine Produces Antidepressant-Like Effects in Mice Through Promotion of BDNF Signaling Pathway.

Not available

S-EPMC4571627 | biostudies-literature

ANRIL promotes the regulation of colorectal cancer on lymphatic endothelial cells via VEGF-C and is the key target for Pien Tze Huang to inhibit cancer metastasis.

Not available

S-EPMC10501904 | biostudies-literature

Disproportionate Reduction of Serotonin Transporter May Predict the Response and Adherence to Antidepressants in Patients with Major Depressive Disorder: A Positron Emission Tomography Study with 4-[18F]-ADAM.

Not available

S-EPMC4540099 | biostudies-literature

PRODH regultes naive pluripotency by influencing mitochondrial oxidative phosphorylation (Targeted metabolomics)

Naïve human embryonic stem cells (hESCs) that resemble the pre-implantation epiblasts are fueled by a combination of aerobic glycolysis and oxidative phosphorylation, but their mitochondrial regulators are poorly understood. Here we report that, proline dehydrogenase (PRODH), a mitochondria-local...

2024-02-12 | MTBLS7832 | MetaboLights

Dynamically reorganized chromatin is the key for the reprogramming of somatic cells to pluripotent cells

We investigated genome-wide nucleosome coverage and histone methylation occupancies in somatic MEFs, intermediate pre-iPSCs and fully reprogrammed iPSCs. We found that nucleosome occupancies increased in promoter regions and decreased in intergenic regions in pre-iPSCs and then recover to an interme...

ORGANISM(S): Mus musculus

2015-12-13 | E-GEOD-60627 | biostudies-arrayexpress

PRODH regultes naive pluripotency by influencing mitochondrial oxidative phosphorylation (Untargeted metabolomics)

2024-02-12 | MTBLS7840 | MetaboLights

Biological characteristics and conjugated antigens of ClfA A-FnBPA and CP5 in Staphylococcus aureus.

Not available

S-EPMC5764038 | biostudies-literature

Gab2 mediates hepatocellular carcinogenesis by integrating multiple signaling pathways.

Not available

S-EPMC5690380 | biostudies-literature