Huang De - OmicsDI

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Unknown (6192)
Transcriptomics (269)
Proteomics (137)
Genomics (98)
Metabolomics (35)
Genomic (2)
Multiomics (2)

Organisms

Homo sapiens (273)
Mus musculus (80)
Streptomyces coelicolor (18)
Arabidopsis thaliana (9)
Oryza sativa (7)
Rattus norvegicus (6)
Drosophila melanogaster (4)
Bos taurus (4)
Escherichia coli (4)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (3)
Zea mays subsp. mays (3)
Plasmodium falciparum (3)
Danio rerio (3)
Streptomyces coelicolor A3(2) (2)
Oryza sativa Japonica Group (2)
Gallus gallus (2)
Gastrodia elata (1)
Spalax carmeli (1)
Trametes versicolor (1)
Coccinella septempunctata (1)
Nannospalax galili (1)
Camellia sinensis (1)
Nannochloropsis oceanica (1)
Hevea brasiliensis (1)
Aspergillus flavus (1)
Rhipicephalus microplus (1)
Pimephales promelas (1)
Lupinus albus (1)
Capsella bursa-pastoris (1)
Cirsium arvense (1)

Organisms

Homo sapiens (2)
Rhazya stricta (1)
Rhipicephalus microplus (1)

Repository

biostudies-arrayexpress (298)
pride (117)
EGA (57)
MetaboLights (35)
iProX (10)
MassIVE (7)
ENA (6)
NODE (4)
dbGaP (2)
geo (2)
jPOST (2)
PanoramaPublic (1)

Tissue

Cell culture (19)
Brain (9)
Epithelial cell (9)
Plant cell (8)
Leaf (7)
Blood (5)
Blood plasma (5)
Liver (5)
Lung (5)
T cell (5)
Heart (4)
Kidney (4)
Bone marrow (3)
Blood cell (2)
Colon (2)
Embryo (2)
Fibroblast (2)
Macrophage (2)
Malignant cell (2)
Melanocyte (2)
Permanent cell line cell (2)
Platelet (2)
Whole body (2)
Astrocyte of the forebrain (1)
B cell (1)
Blood platelet (1)
CNS neuron (sensu Vertebrata) (1)
Cardiac muscle cell (1)
Cell suspension culture (1)
PanIN cell (1)

Disease

Brain cancer (3)
Breast cancer (3)
Colon cancer (3)
Acute leukemia (2)
Alzheimer's disease (2)
COVID-19 (2)
Disease (2)
Disease free (2)
Pneumonia (2)
Pre-eclampsia (2)
Prostate adenocarcinoma (2)
Non tumoral reference sample (1)
Extranodal NK/T-Cell Lymphoma derived cell line (1)
Nodal peripheral T-cell Lymphoma (1)
Normal (1)
Acute myeloid leukemia (1)
Albright's hereditary osteodystrophy (1)
Amyotrophic lateral sclerosis (1)
Autism spectrum disorder (1)
Brain glioma (1)
Cardiovascular system disease (1)
Ewing sarcoma of bone (1)
Exfoliation syndrome (1)
Frontotemporal dementia (1)
Inflammatory bowel disease (1)
Influenza (1)
Malaria (1)
Melanoma and neural system tumor syndrome (1)
Mixed disorder as reaction to stress (1)
Non-alcoholic steatohepatitis (1)

Technology Type

Mass Spectrometry (117)
Shotgun proteomics (53)
Mass spectrometry (28)
Affinity purification coupled with mass spectrometry proteomics (21)
Bottom-up proteomics (16)
Data-dependent acquisition (13)
Gel-based experiment (11)
Top-down proteomics (7)
NMR spectroscopy (6)
All-ion fragmentation (3)
Data-independent acquisition (3)
SWATH MS (3)
Mass spectrometry assay (2)
DiaPASEF (2)
Immunopeptidomics (2)
Affymetrix OncoScan FFPE Express (1)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Proteogenomics (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (18)
Liquid Chromatography MS - negative - reverse phase (7)
Liquid Chromatography MS - positive - reverse phase (7)
N/A (6)
Illumina HiSeq 4000 (5)
Chromium Next GEM Single Cell Multiome ATAC + Gene Expression Reagent Bundle, (4)
Illumina HiSeq 2500 (4)
Q Exactive (4)
10X Genomics reagent kit (3)
Illumina HiSeq 2000 (3)
NextSeq 500 (3)
Bruker (3)
Gas Chromatography MS - positive (3)
Liquid Chromatography MS - positive - hilic (3)
10X Chromium Nuclei Isolation Kit (2)
Illumina MiSeq (2)
LTQ Orbitrap Elite (2)
Direct infusion MS - negative (2)
Direct infusion MS - positive (2)
Liquid Chromatography MS - negative - hilic (2)
10X Chromium On-Chip Multiplex (1)
Chromium Next GEM Single Cell Multiome Reagent Bundle (1)
10X Genomics reagents (1)
10X Genomics Chromium (1)
Illumina Genome Analyzer IIx (1)
GenePix 4000B [Axon Instruments] (1)
Illumina Genome Analyzer II (1)
LTQ (1)
LTQ Orbitrap (1)
SolariX (1)

Publication Date

2012 (47)
2013 (39)
2015 (37)
2014 (34)
2022 (32)
2010 (30)
2016 (29)
2025 (27)
2021 (25)
2026 (24)
2011 (24)
2023 (22)
2020 (18)
2024 (17)
2019 (13)
2017 (13)
2008 (11)
2018 (10)
2009 (7)
2007 (5)
2005 (4)
2006 (3)
2003 (1)

CHEBI ID

CHEBI:16708 (13)
CHEBI:15354 (12)
CHEBI:15756 (11)
CHEBI:16704 (11)
CHEBI:17368 (11)
CHEBI:30769 (11)
CHEBI:16737 (10)
CHEBI:16919 (10)
CHEBI:17154 (10)
CHEBI:22653 (10)
CHEBI:25094 (10)
CHEBI:15428 (9)
CHEBI:15741 (9)
CHEBI:16335 (9)
CHEBI:16811 (9)
CHEBI:17568 (9)
CHEBI:17748 (9)
CHEBI:17750 (9)
CHEBI:17895 (9)
CHEBI:18237 (9)
CHEBI:22660 (9)
CHEBI:24898 (9)
CHEBI:32816 (9)
CHEBI:6650 (9)
CHEBI:16027 (8)
CHEBI:16449 (8)
CHEBI:17351 (8)
CHEBI:17562 (8)
CHEBI:17822 (8)
CHEBI:25017 (8)

Metabolite Name

Citric acid (7)
Uracil (7)
Creatinine (6)
Glycine (6)
L-tyrosine (6)
Uridine (6)
Adenine (5)
Adenosine (5)
Adenosine (5)
Choline (5)
Creatine (5)
Glycerol (5)
L-alanine (5)
L-glutamic acid (5)
L-isoleucine (5)
L-leucine (5)
L-methionine (5)
L-valine (5)
Thymidine (5)
AMP (4)
Adenine (4)
Cytidine (4)
Glycerophosphocholine (4)
Guanosine (4)
Hypoxanthine (4)
Isoleucine (4)
L-lysine (4)
L-phenylalanine (4)
L-proline (4)
L-threonine (4)

First Public Date

2014 (2)
2026 (1)
2020 (1)
2019 (1)
2017 (1)

Modification

-17.026549 (1)
15.994915 (1)
3-dipalmitoyl-glycerol)cysteine (1)
42.010565 (1)
47.984744 (1)
788.725776 (1)

Study type

Transcription profiling by array (155)
RNA-seq of coding RNA (47)
ChIP-seq (21)
Comparative genomic hybridization by array (12)
RNA-seq of coding RNA from single cells (12)
ChIP-chip by tiling array (8)
Methylation profiling by high throughput sequencing (8)
Unknown experiment type (6)
Methylation profiling by array (5)
RNA-seq of non coding RNA (5)
Single nucleus RNA sequencing (4)
Other (3)
MicroRNA profiling by array (2)
DNA-seq (2)
Transcription profiling by array;comparative genomic hybridization by array (1)
Cell line - Single-cell sequencing (1)
Human - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
Genotyping by array (1)
ScATAC-seq (1)

Release Date

2025 (731)
2023 (698)
2022 (698)
2024 (632)
2021 (627)
2020 (495)
2019 (371)
2018 (331)
2016 (312)
2017 (310)
2015 (298)
2014 (209)
2013 (159)
2012 (158)
2011 (105)
2026 (98)
2010 (73)
2008 (62)
2009 (44)
2007 (25)
2005 (14)
2006 (13)
2003 (8)
2004 (4)
2001 (4)
1998 (4)
1999 (3)
2002 (2)
2000 (1)

Lab affiliation

Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (2)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (2)
Department of Structural Biology and Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (2)
Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. (2)
Section of Paediatric Infectious Diseases, Faculty of Medicine, Imperial College London, UK (2)
The University of Melbourne (2)
1- Head, Translational Antigen Discovery Laboratory, Hudson Institute of Medical Research 2- Director, Clinical Proteomics Facility, Department of Medicine, School of Clinical Sciences, Monash University (1)
1. Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA, USA. 2. Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, USA. (1)
1Cancer Program, Biomedicine Discovery Institute, Monash University, Melbourne, VIC 3800, Australia 2Department of Biochemistry and Molecular Biology, Monash University, Melbourne, VIC 3800, Australia (1)
Agriculture and Agrifood Canada Morden Research and Development Centre (1)
Assistant Professor at Biomolecular Mass Spectrometry and Proteomics, Utrecht University Proteomics facility anager at Netherlands Cancer Institute (1)
Beijing Key Laboratory of Gene Resource and Molecular Development, College of Life Sciences, Beijing Normal University, Beijing China (1)
CNRS, UMR7178, LSMBO, 67087 Strasbourg, FRANCE Université de Strasbourg, IPHC, 25 rue Becquerel, 67087 Strasbourg, FRANCE (1)
Cambridge Institute for Medical Research, University of Cambridge, Cambridge Biomedical Campus, CB2 0XY, UK (1)
Cellular and Molecular Pharmacology, UCSF, San Francisco, CA (1)
Center for Network Systems Biology, Boston University, USA (1)
Centre de Recherche en Cancérologie de Marseille, CRCM INSERM U1068 - Equipe de J.L. Iovanna 163 avenue de Luminy, Parc scientifique de Luminy, Case 915 13288 Marseille Cedex 9 FRANCE Tel : (+33) 4 91 82 88 31 (1)
Centro Nacional de Investigaciones Cardiovasculares (CNIC), Madrid. (1)
Children’s Medical Research Institute, Faculty of Medicine and Health, The University of Sydney, Westmead, NSW 2145, Australia (1)
Chinese Academy of Sciences, Guangzhou (1)
College of Resources and Environment, Fujian Agricultural and Forestry University (1)
College of Resources and Environment, Fujian Agriculture and Forestry University (1)
Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD) and Institute for Mitochondrial Diseases and Aging, Medical Faculty, University of Cologne, Cologne, Germany. (1)
David Geffen School of Medicine, University of California, Los Angeles, CA 90095 Department of Molecular and Medical Pharmacology, Jonsson Comprehensive Cancer Center, Institute for Molecular Medicine, California NanoSystems Institute (1)
Department and Graduate Institute of Biology and Anatomy, National Defense Medical Center, Taipei, Taiwan (1)
Department of Anatomy and Cell Biology Faculty of Medicine and Health Science Université de Sherbrooke (1)
Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton 3800, Victoria, Australia (1)
Department of Biochemistry and Molecular Biology, Infection and Immunity theme, Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia (1)
Department of Biochemistry and Molecular Cell Biology, Shanghai Key Laboratory for Tumor Microenvironment and Inflammation, Shanghai Jiao Tong University School of Medicine (1)
Department of Biological Sciences University of Delaware Newark, DE, USA. (1)

Tags

xref:PubMed:33431859 (1)
xref:PubMed:31098403 (1)
xref:PubMed:29109913 (1)
xref:PubMed:21712043 (1)
xref:PubMed:31586122 (1)

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Differential effects of Huang-Lian-Jie-Du Decoction on Alzheimer’s disease and normal rats

Introduction: Huang-Lian-Jie-Du Decoction (HLJDD), a botanical drug used in traditional medicine, has been used in the management of Alzheimer’s disease (AD). However, the mechanisms underlying its preventive effects remain inadequately understood, particularly due to the absence of metabolomic s...

2025-11-04 | MTBLS13256 | MetaboLights

SRA of transcriptome of Hevea brasiliensis

We first report the use of next-generation massively parallel sequencing technologies and de novo transcriptome assembly to gain insight into the wide range of transcriptome of Hevea brasiliensis. The output of sequenced data showed that more than 12 million sequence reads with average length of 90n...

ORGANISM(S): Hevea brasiliensis

2011-09-01 | E-GEOD-26514 | biostudies-arrayexpress

Yin Zhi Huang, a traditional Chinese herbal formula, ameliorates diet-induced obesity and hepatic steatosis by activating the AMPK/SREBP-1 and the AMPK/ACC/CPT1A pathways.

Not available

S-EPMC7154390 | biostudies-literature

FASN-dependent de novo lipogenesis is required for brain development

Fate and behaviour of neural progenitor cells is tightly regulated during mammalian brain development. Metabolic pathways, such as glycolysis and oxidative phosphorylation, that are required for supplying energy and providing molecular building blocks to generate cells, govern progenitor function. H...

ORGANISM(S): Homo sapiens (Human)

2022-01-14 | PXD026110 | Pride

Pyruvate vs Lactate as electron donor in Sulfate reduction

In order to obtain a global view of energy metabolism pathways of the sulfate-reducer Desulfovibrio vulgaris Hildenborough and the proteins involved therein whole-genome microarrays were used to compare the transcriptional response of cells grown with hydrogen/sulfate, pyruvate/sulfate, lactate/thio...

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-05-31 | E-GEOD-8071 | biostudies-arrayexpress

Hydrogen vs Lactate as electron donor in Sulfate reduction

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-05-31 | E-GEOD-8037 | biostudies-arrayexpress

Evolutionary de Winter pattern: from STEMI to de Winter ECG-a case report.

Not available

S-EPMC8788021 | biostudies-literature

De novo assembly of 150 Danish genomes reveals rich structural complexity

Most known genetic variation in human genomes has been called from comparison of short reads to the reference genome, an approach biased against finding complex variation. We sequenced 150 individuals from 50 parent-offspring trios with multiple insert-size libraries to very high coverage. We show t...

EGAS00001002108 | EGA

Can skinfold thickness equations be substituted for bioimpedance analysis in children?

Not available

S-EPMC9432255 | biostudies-literature

Not available

S-EPMC12316691 | biostudies-literature

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