Huang Shi S - OmicsDI

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Unknown (3448)
Proteomics (85)
Transcriptomics (38)
Genomics (11)
Metabolomics (11)
Genomic (1)

Organisms

Andropogon gerardi (46)
Bacteria (46)
Bartonella quintana JK 31 (46)
Canis lupus familiaris (46)
Cnidaria (46)
Ensifer adhaerens (46)
Halictus scabiosae (46)
Human alphaherpesvirus 1 strain 17 (46)
Homo sapiens (38)
Mus musculus (22)
Streptomyces coelicolor (2)
Staphylococcus aureus (2)
Bubalus bubalis (2)
Pteropus alecto (1)
Bos grunniens (1)
Brassica oleracea (1)
Lilium longiflorum (1)
Setaria italica (1)
Oryza sativa Japonica Group (1)
Saccharomyces cerevisiae (1)
Danio rerio (1)
Arabidopsis thaliana (1)
Bos taurus (1)
Candida albicans (1)
Helicobacter pylori G27 (1)
Penaeus monodon nudivirus (1)
Rattus rattus (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Sus scrofa domesticus (1)
Vibrio parahaemolyticus RIMD 2210633 (1)

Organisms

Homo sapiens (1)

Repository

biostudies-arrayexpress (46)
pride (46)
iProX (36)
MetaboLights (11)
MassIVE (3)
EGA (2)
dbGaP (1)
ENA (1)

Tissue

Cell culture (7)
Liver (7)
Lung (4)
B cell (2)
Blood plasma (2)
Brain (2)
Heart (2)
Hepatocyte (2)
Leaf (2)
Pancreas (2)
Plant cell (2)
Apical bud (1)
Cell suspension culture (1)
Cerebrospinal fluid (1)
Colon (1)
Embryonic stem cell (1)
Epithelial cell (1)
Intestinal juice (1)
Macrophage (1)
Mantle (1)
Pancreatic adenocarcinoma cell line (1)
Pancreatic cancer cell (1)
Pancreatic stellate cell (1)
Permanent cell line cell (1)
Regional part of brain (1)
Stomach (1)
T cell (1)
Uterine endometrium (1)

Disease

Breast cancer (2)
Disease free (2)
Hepatocellular carcinoma (2)
Acute leukemia (1)
Alzheimer's disease (1)
Colon cancer (1)
Liver cancer (1)
Lung carcinoma in situ (1)
Pancreatic cancer (1)
Pancreatic ductal adenocarcinoma (1)
Stomach cancer (1)

Technology Type

Mass Spectrometry (46)
Shotgun proteomics (24)
Mass spectrometry (11)
Bottom-up proteomics (9)
Data-dependent acquisition (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
Gel-based experiment (2)
Top-down proteomics (2)
All-ion fragmentation (1)
SRM/MRM (1)

Instrument Platform

Gas Chromatography MS - positive (3)
Liquid Chromatography MS - alternating - reverse phase (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Affymetrix Array scanner (1)
Affymetrix hybridization station (1)
Illumina HiSeq 4000 (1)
LTQ Orbitrap (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion Lumos (1)
Liquid Chromatography MS - alternating – hilic (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2022 (25)
2021 (15)
2015 (14)
2025 (14)
2024 (12)
2023 (9)
2012 (8)
2019 (7)
2013 (6)
2017 (5)
2014 (5)
2020 (5)
2011 (4)
2010 (4)
2016 (3)
2026 (3)
2006 (1)
2005 (1)
2018 (1)

CHEBI ID

CHEBI:17351 (9)
CHEBI:16704 (8)
CHEBI:17568 (8)
CHEBI:15756 (8)
CHEBI:28875 (7)
CHEBI:17154 (7)
CHEBI:16335 (7)
CHEBI:30813 (6)
CHEBI:30805 (6)
CHEBI:17748 (6)
CHEBI:17533 (6)
CHEBI:15891 (6)
CHEBI:28842 (6)
CHEBI:17509 (6)
CHEBI:32816 (6)
CHEBI:17802 (6)
CHEBI:16027 (6)
CHEBI:17368 (6)
CHEBI:30769 (6)
CHEBI:20067 (6)
CHEBI:17521 (5)
CHEBI:16708 (5)
CHEBI:30794 (5)
CHEBI:116314 (5)
CHEBI:17859 (5)
CHEBI:39567 (5)
CHEBI:55328 (5)
CHEBI:28834 (5)
CHEBI:28837 (5)
CHEBI:24813 (5)

Metabolite Name

Uracil (6)
Hypoxanthine (6)
Adenosine (5)
Thymidine (5)
L-Malic acid (4)
Methyl jasmonate (4)
Cortisol (4)
Taurocholic acid (4)
Pipecolic acid (4)
Guanine (4)
Palmitic acid (4)
Linoleic acid (4)
Azelaic acid (4)
Adenine (4)
Guanosine (4)
Uridine (4)
Creatinine (4)
Hydroxypyruvic acid (3)
Isoxanthopterin (3)
Pelargonic acid (3)
Dimethylmalonic acid (3)
Phthalic acid (3)
Ferulic acid (3)
Citrulline (3)
16-Hydroxy hexadecanoic acid (3)
4-Pyridoxic acid (3)
9,10-DHOME (3)
Kynurenic acid (3)
Ricinoleic acid (3)
Benzoic acid (3)

First Public Date

2023 (1)

Study type

Transcription profiling by array (19)
RNA-seq of coding RNA (12)
ChIP-seq (5)
Other (3)
Methylation profiling by high throughput sequencing (3)
Unknown experiment type (2)
Comparative genomic hybridization by array (2)

Release Date

2025 (587)
2022 (510)
2024 (445)
2023 (423)
2021 (340)
2020 (262)
2019 (172)
2018 (144)
2017 (125)
2016 (101)
2015 (95)
2026 (90)
2014 (55)
2013 (54)
2012 (35)
2011 (23)
2010 (15)
2009 (6)
2006 (3)
2004 (3)
2005 (2)
2008 (2)
2007 (1)
2003 (1)

Lab affiliation

BCMP, Harvard Medical School, Boston, USA Cancer Biology, Dana-Farber Cancer Institute, Boston, USA (2)
Department of Bioengineering, Stanford University, Stanford, CA 94305, USA Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA Chan Zuckerberg Biohub, San Francisco, CA 94158 (2)
Department of Physiology & Biophysics, University of California, Irvine, Irvine, California, USA (2)
The First Affiliated Hospital, School of Medicine, Zhejiang University (2)
Zhejiang University (2)
Agronomy College, Henan Agricultural University, China (1)
Beijing Key Laboratory of DNA Damage Response and College of Life Science, Capital Normal University, Beijing 100048, China (1)
CAS Key Laboratory for Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Bavaria, Germany (1)
College of Animal Science and Technology, China Agricultural University, Beijing 100193, China (1)
College of Food Science and Technology, Nanjing Agricultural University, Nanjing, China (1)
College of Pharmacy, Jinan University, Guangzhou, China (1)
Degenerative Diseases Program, Center for Genetic Disorders and Aging Research, Sanford Burnham Prebys Medical Discovery Institute (1)
Department of Cardiology, Shanghai East Hospital, Tongji University School of Medicine, No. 150 Jimo Road, Shanghai 200120, China. (1)
Department of Chemistry, Southern University of Science and Technology, Shenzhen, China (1)
Department of Liver Surgery and Transplantation, Liver Cancer Institute, Zhongshan Hospital, Fudan University, and Key Laboratory of Carcinogenesis and Cancer Invasion, Ministry of Education (1)
Department of Liver Surgery and Transplantation, Liver Cancer Institute, Zhongshan Hospital, Fudan University; Key Laboratory of Carcinogenesis and Cancer Invasion of Ministry of Education, Key Laboratory of Medical Epigenetics and Metabolism, Institutes of Biomedical Sciences, Fudan University, Shanghai 200032, China (1)
Department of Neurosurgery, The Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang, China. (1)
Department of Pharmacy, Shanghai 9th People's Hospital, Shanghai Jiao Tong University School of Medicine (1)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany (1)
Head of the Department, Proteomics Core (1)
Hunan University (1)
Institute of Molecular Systems Biology, ETH Zürich, Switzerland (1)
Institute of Systems Biomedicine, Peking University Health Science Center, Beijing 100191, China. (1)
JNU-HKUST Joint Laboratory for Neuroscience and Innovative Drug Research, College of Pharmacy, Jinan University, Guangzhou 510632, Guangdong, China. (1)
Key Laboratory of Aquaculture in South China Sea for Aquatic Economic Animal of Guangdong Higher Education Institutes, Laboratory of Marine Pearl Culture (1)
Kunming Institute of Zoology, Chinese Academy of Sciences (1)
Laboratory for Biological Mass Spectrometry, Biosciences Institute, Newcastle University, Newcastle-upon-Tyne, NE2 4HH, UK (1)
Nanjing Medical University (1)
National Center for Protein Sciences (The PHOENIX center, Beijing) (1)

Tags

xref:PubMed:37095348 (1)

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Tracing the locality of prisoners and workers at the Mausoleum of Qin Shi Huang: First Emperor of China (259-210 BC).

Not available

S-EPMC4890548 | biostudies-literature

Transcriptome and Gut Microbiota Profiling Analysis of ANIT-Induced Cholestasis and the Effects of Da-Huang-Xiao-Shi Decoction Intervention.

Not available

S-EPMC9769994 | biostudies-literature

Genetic structure of Mount Huang honey bee (Apis cerana) populations: evidence from microsatellite polymorphism.

Not available

S-EPMC5226090 | biostudies-literature

Identification of regulators of polyploidization presents therapeutic targetsfor treatment of AMKL

Wen Q, Goldenson B, Silver SJ, Schenone M, Dancik V, Huang Z, Wang LZ, Lewis TA, An WF, Li X, Bray MA, Thiollier C, Diebold L, Gilles L, Vokes MS, Moore CB, Bliss-Moreau M, Verplank L, Tolliday NJ, Mishra R, Vemula S, Shi J, Wei L, Kapur R, Lopez CK, Gerby B, Ballerini P, Pflumio F, Gilliland DG, Go...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2014-01-27 | MSV000078536 | MassIVE

Anticoccidial Effect of Herbal Powder "Shi Ying Zi" in Chickens Infected with Eimeria tenella.

Not available

S-EPMC7552158 | biostudies-literature

The IDI1/SREBP2 axis drives intrahepatic cholestasis and is a treatment target of San-Huang-Cai-Zhu formula identified by sequencing and experiments.

Not available

S-EPMC9944032 | biostudies-literature

S-nitrosylated cysteine residues identification in Staphylococcus aureus XN108

Staphylococcus aureus is a major human pathogen that causes diverse severe infections. The emergence of multi-drug resistance has caused S. aureus infection a global concern, especially resistance to vancomycin, a drug of last resort. A growing body of research focuses on the resistance mechanisms a...

ORGANISM(S): Staphylococcus Aureus

2023-03-27 | PXD041143 |

Diagnostic Performance of Angiography-Derived Quantitative Flow Ratio: A Systematic Review and Meta-Analysis.

Not available

S-EPMC12922042 | biostudies-literature

Huang-Lian-Jie-Du decoction alleviates cognitive deficits in Alzheimer's disease model 5xFAD mice by inhibiting Trem2/Dap12 signaling pathway.

Not available

S-EPMC11998141 | biostudies-literature

Christensenella regulated by Huang-Qi-Ling-Hua-San is a key factor by which to improve type 2 diabetes.

Not available

S-EPMC9597676 | biostudies-literature