Huang Z Z - OmicsDI

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Unknown (42170)
Proteomics (1159)
Transcriptomics (188)
Metabolomics (153)
Genomics (96)
Models (2)
Multiomics (1)

Organisms

Homo sapiens (276)
Mus musculus (100)
Arabidopsis thaliana (17)
Rattus norvegicus (12)
Oryza sativa (7)
Oryza sativa Japonica Group (4)
Saccharomyces cerevisiae (4)
Bombyx mori (3)
Plasmodium falciparum (3)
Harpegnathos saltator (2)
Caenorhabditis elegans (2)
Spalax carmeli (1)
Brassica rapa subsp. oleifera (1)
Nannospalax galili (1)
Sorghum propinquum (1)
Pteropus alecto (1)
Bos grunniens (1)
Hevea brasiliensis (1)
Brassica oleracea (1)
Methanococcus maripaludis S2 (1)
Metarhizium acridum (1)
Camponotus floridanus (1)
Mustela putorius furo (1)
Zea mays subsp. mexicana (1)
Brassica rapa subsp. pekinensis (1)
Macaca mulatta (1)
Clonorchis sinensis (1)
Brassica napus (1)
Equus caballus (1)
Yersinia pestis (1)

Organisms

Mus musculus (2)
Bombyx mori (1)

Repository

pride (860)
iProX (260)
biostudies-arrayexpress (212)
MetaboLights (153)
EGA (69)
PAXDB (18)
MassIVE (16)
jPOST (4)
ENA (3)
BioModels (1)
Cell Collective (1)
PanoramaPublic (1)

Tissue

Cell culture (232)
Epithelial cell (76)
Brain (52)
Liver (43)
Whole body (26)
Leaf (25)
Kidney (22)
Permanent cell line cell (22)
Blood plasma (21)
Lung (21)
Blood (18)
Heart (18)
Plant cell (15)
Testis (14)
B cell (13)
Hepatocyte (13)
Stem cell (13)
Blood cell (12)
Bone marrow (12)
HeLa cell (12)
Spleen (12)
Fibroblast (11)
Embryo (10)
Embryonic stem cell (10)
Blood serum (9)
Cell suspension culture (9)
T cell (9)
Primary cell (8)
Skin (8)
Macrophage (7)

Disease

Disease free (30)
Breast cancer (20)
Colon cancer (10)
Alzheimer's disease (8)
Acute leukemia (7)
Cardiovascular system disease (7)
Prostate adenocarcinoma (6)
Lung cancer (5)
Melanoma (5)
Brain cancer (4)
Cervix carcinoma (4)
Glioblastoma (4)
Influenza (4)
Non-alcoholic steatohepatitis (4)
Non-small cell lung carcinoma (4)
Severe acute respiratory syndrome (4)
Chronic lymphocytic leukemia (3)
Liver cancer (3)
Malignant neoplasm of ovary (3)
Membranous glomerulonephritis (3)
Neuroblastoma (3)
Stomach cancer (3)
Stomach carcinoma (3)
Type 2 diabetes mellitus (3)
Autism spectrum disorder (2)
Brain disease (2)
Carcinoma (2)
Cholangiocarcinoma (2)
Parkinson's disease (2)
Polycystic Kidney (2)

Technology Type

Mass Spectrometry (860)
Shotgun proteomics (415)
Bottom-up proteomics (145)
Mass spectrometry (109)
Affinity purification coupled with mass spectrometry proteomics (104)
Data-dependent acquisition (89)
Gel-based experiment (50)
Data-independent acquisition (47)
Mass spectrometry assay (37)
Top-down proteomics (29)
Chemical cross-linking coupled with mass spectrometry proteomics (28)
SWATH MS (28)
All-ion fragmentation (14)
Affinity proteomics (9)
SRM/MRM (9)
NMR spectroscopy (8)
Proteogenomics (8)
DiaPASEF (5)
Immunopeptidomics (4)
MSE (3)
Mass spectrometry imaging (3)
Illumina HiSeq 2000, ILLUMINA (2)
Olink affinity proteomics (2)
Illumina HiSeq 2500 (ILLUMINA), Illumina HiSeq 4000 (ILLUMINA) (1)
NextSeq 550, ILLUMINA (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
HDMSE (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (50)
Liquid Chromatography MS - negative - reverse phase (46)
Liquid Chromatography MS - positive - reverse-phase (15)
Liquid Chromatography MS - negative - reverse-phase (15)
Liquid Chromatography MS - negative - hilic (14)
Liquid Chromatography MS - positive - hilic (13)
Gas Chromatography MS - positive (8)
Q Exactive (6)
Liquid Chromatography MS - (5)
Bruker (5)
Liquid Chromatography MS - negative (5)
Liquid Chromatography MS - positive (5)
Liquid Chromatography MS - alternating - reverse phase (5)
Illumina NovaSeq 6000 (4)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (4)
LTQ Orbitrap Elite (3)
Orbitrap Fusion Lumos (3)
Illumina Genome Analyzer II (2)
LTQ Orbitrap (2)
Hamamatsu Nanozoomer S60 (1)
10X Genomics Chromium (1)
Illumina Genome Analyzer IIx (1)
HiSeq X Ten (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
LTQ (1)
LTQ Orbitrap Velos (1)
Orbitrap Eclipse (1)
Orbitrap Fusion ETD (1)
SolariX (1)

Publication Date

2025 (214)
2024 (194)
2022 (187)
2026 (161)
2021 (154)
2023 (145)
2020 (87)
2019 (63)
2018 (46)
2016 (43)
2014 (43)
2013 (34)
2017 (28)
2010 (28)
2012 (27)
2011 (24)
2015 (23)
2008 (12)
2007 (6)
2009 (5)
2006 (1)

UNIPROT ID/AC

143BA_DANRE (15)
143BB_DANRE (15)
143G1_DANRE (15)
7955.ENSDARP00000023429 (15)
7955.ENSDARP00000067603 (15)
7955.ENSDARP00000067945 (15)
7955.ENSDARP00000082327 (15)
7955.ENSDARP00000093747 (15)
7955.ENSDARP00000093780 (15)
7955.ENSDARP00000093791 (15)
7955.ENSDARP00000093801 (15)
7955.ENSDARP00000096295 (15)
7955.ENSDARP00000096352 (15)
7955.ENSDARP00000098342 (15)
7955.ENSDARP00000098726 (15)
7955.ENSDARP00000099550 (15)
7955.ENSDARP00000100434 (15)
7955.ENSDARP00000101311 (15)
7955.ENSDARP00000101467 (15)
7955.ENSDARP00000101525 (15)
7955.ENSDARP00000101862 (15)
Q9LIE5 (1)
O24646 (1)
Q9FFA7 (1)
Q9LTJ6 (1)
Q9FN03 (1)
Q8LGH4 (1)
Q9M086 (1)
Q9SYX2 (1)
P43254 (1)

CHEBI ID

CHEBI:17895 (37)
CHEBI:17368 (37)
CHEBI:30769 (37)
CHEBI:16335 (35)
CHEBI:15354 (35)
CHEBI:15756 (35)
CHEBI:16919 (34)
CHEBI:15891 (33)
CHEBI:17295 (33)
CHEBI:16708 (32)
CHEBI:16704 (32)
CHEBI:17568 (32)
CHEBI:7916 (32)
CHEBI:17596 (32)
CHEBI:16750 (31)
CHEBI:17203 (30)
CHEBI:16015 (30)
CHEBI:17154 (30)
CHEBI:15741 (29)
CHEBI:16737 (29)
CHEBI:17748 (28)
CHEBI:16359 (28)
CHEBI:17750 (27)
CHEBI:15971 (27)
CHEBI:16040 (27)
CHEBI:16828 (27)
CHEBI:17821 (26)
CHEBI:32816 (26)
CHEBI:17562 (26)
CHEBI:16414 (26)

Metabolite Name

Hypoxanthine (33)
Adenine (32)
Uridine (32)
Uracil (30)
Adenosine (29)
Guanosine (29)
L-Tyrosine (28)
Azelaic acid (27)
Guanine (26)
Palmitic acid (26)
Inosine (26)
Taurine (25)
Pantothenic acid (25)
Creatine (25)
Cytosine (24)
Riboflavin (24)
Creatinine (24)
L-Histidine (23)
Xanthosine (23)
L-Arginine (23)
Linoleic acid (23)
L-Tryptophan (23)
L-Valine (23)
Ornithine (22)
L-Proline (22)
Thymidine (22)
Choline (21)
Salicylic acid (21)
Dodecanoic acid (21)
L-Phenylalanine (21)

First Public Date

2013 (2)
2022 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

State Key Laboratory of Genetic Engineering, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai 200438, China (8)
Department of Life Science, National Taiwan University (5)
Huazhong Agricultural University (5)
Imperial College London (5)
Department of Cardiovascular Medicine, Center for Circadian Metabolism and Cardiovascular Disease, Southwest Hospital, Army Medical University; Chongqing, China. (4)
Guangzhou Medical University (4)
The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China (4)
Tsinghua University, China (4)
Aarhus University Department of Biomedicine DK-8000 Aarhus (3)
Affiliation of Qiutao Xu: State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, Guangxi University, Nanning 530004, China (3)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (3)
Children's Hospital of Nanjing Medical University (3)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (3)
Department of pathophysiology, School of Basic Medical Sciences, Wuhan University, Wuhan 430071, China (3)
Institute of Clinical Medicine in National Yang-Ming Chiao Tung University, Taiwan (Muh-Hwa Yang Lab) (3)
Jinan University (3)
Key Laboratory of Tropical Marine Bio-resources and Ecology,South China Sea Institute of Oceanology, Chinese Academy of Sciences (3)
School of Pharmacy, University of Wisconsin-Madison (3)
Shanghai Institute of Hematology, State Key Laboratory of Medical Genomics, Collaborative Innovation Center of Hematology, National Research Center for Translational Medicine at Shanghai, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200000, China (3)
Shanghaitech University (3)
State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Sun Yat-sen University Cancer Center, Guangzhou 510060, China (3)
The University of Chicago (3)
Zhejiang University (3)
1. Key Laboratory of Photoelectric Conversion and Utilization of Solar Energy, Shandong Provincial Key Laboratory of Synthetic Biology, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China. 2. Shandong Energy Institute, Qingdao 266101, China. 3. Qingdao New Energy Shandong Laboratory, Qingdao 266101, China. (2)
Biomedicine Discovery Institute, Monash University, Clayton 3800, Victoria, Australia (2)
Brain Injury Center, Renji Hospital, School of Medicine, Shanghai Jiao Tong University; Shanghai Institute of Head Trauma, Shanghai, China, 200127. (2)
Cambridge Institute for Medical Research, University of Cambridge, Cambridge Biomedical Campus, CB2 0XY, UK (2)
Center for Stem Cell Biology and Tissue Engineering, Key Laboratory for Stem Cells and Tissue Engineering, Ministry of Education, Sun Yat-sen University, Guangzhou, Guangdong, China. (2)
Chinese Academy of Sciences Shanghai Institute of Materia Medica (2)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (2)

IsPrivate

False (1)

Modification

N6 (2)
Not available (2)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (113)
RNA-seq of coding RNA (47)
ChIP-seq (19)
RNA-seq of non coding RNA (7)
Unknown experiment type (6)
Methylation profiling by high throughput sequencing (5)
Comparative genomic hybridization by array (3)
Methylation profiling by array (3)
RNA-seq of coding RNA from single cells (3)
Other (2)
Transcription profiling by SAGE (1)
Cell line - One-color microarray (1)
ChIP-chip by array (1)
Genotyping by array (1)

Release Date

2025 (7459)
2022 (5971)
2024 (5493)
2023 (5420)
2021 (4539)
2020 (3156)
2019 (2133)
2018 (1703)
2017 (1448)
2016 (1072)
2026 (989)
2015 (905)
2014 (672)
2013 (426)
2012 (304)
2011 (227)
2010 (165)
2009 (92)
2008 (81)
2007 (45)
2006 (29)
2005 (11)
2004 (11)
2003 (10)
2002 (8)
2001 (4)
2000 (4)
1999 (2)
1998 (1)
1997 (1)

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Differential effects of Huang-Lian-Jie-Du Decoction on Alzheimer’s disease and normal rats

Introduction: Huang-Lian-Jie-Du Decoction (HLJDD), a botanical drug used in traditional medicine, has been used in the management of Alzheimer’s disease (AD). However, the mechanisms underlying its preventive effects remain inadequately understood, particularly due to the absence of metabolomic s...

2025-11-04 | MTBLS13256 | MetaboLights

Molecular Mechanism of Z α1-Antitrypsin Deficiency.

Not available

S-EPMC4957051 | biostudies-literature

Acetone stress response in Desulfovibrio vulgaris

Desulfovibrio vulgaris has been studied extensively for its potential in the bioremediation of heavy metals and radionuclides. Hydrocarbons and solvents, as frequent environmental co-contaminants, have been reported to inhibit microbial activities and thereby pose a limitation on bioremediation effi...

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2009-08-08 | E-GEOD-5569 | biostudies-arrayexpress

Ethanol stress response in Desulfovibrio vulgaris

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2010-06-24 | E-GEOD-7489 | biostudies-arrayexpress

Z-folding aircraft electromagnetic scattering analysis based on hybrid grid matrix transformation.

Not available

S-EPMC8924198 | biostudies-literature

Pyruvate fermentation vs Lactate-Sulfate

In order to obtain a global view of energy metabolism pathways of the sulfate-reducer Desulfovibrio vulgaris Hildenborough and the proteins involved therein whole-genome microarrays were used to compare the transcriptional response of cells grown with hydrogen/sulfate, pyruvate/sulfate, lactate/thio...

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-05-31 | E-GEOD-8015 | biostudies-arrayexpress

Structural basis for catalytic activation of protein Z-dependent protease inhibitor (ZPI) by protein Z.

Not available

S-EPMC3429311 | biostudies-literature

Salt/NaCl stress in Desulfovibrio vulgaris Hildenborough

This set of microarray data was used to investigate the effects of D. vulgaris adaptation to excess NaCl. Keywords: stress response, one time point (the mid-log phase for both control and treated cells) Comparison of cells treated with 250 Salt:NaCl to untreated cells at times of mid-log phase min.

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2010-04-11 | E-GEOD-14343 | biostudies-arrayexpress

pH stress in Desulfovibrio vulgaris Hildenborough

Using data from microarray experiments, we investigated the effects of excess NaCl on D. vulgaris. Keywords: stress response, time course Comparison of cells treated with pH10 pH to untreated cells at times of 0,120,240,30,60 min.

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2007-08-31 | E-GEOD-8197 | biostudies-arrayexpress

Assessing B-Z DNA Transitions in Solutions via Infrared Spectroscopy.

Not available

S-EPMC10295956 | biostudies-literature

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