Hughes J A JA - OmicsDI

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Unknown (1436)
Proteomics (19)
Genomics (10)
Transcriptomics (6)
Metabolomics (4)

Organisms

Homo sapiens (20)
Mus musculus (7)
Populus x canadensis (1)
Glycine max (1)
Arabidopsis thaliana (1)
Citrus sinensis (1)
Citrus x limon (1)
Drosophila melanogaster (1)
Escherichia coli (1)
Saccharomyces cerevisiae (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (1)

Organisms

Populus x canadensis (1)

Repository

pride (19)
biostudies-arrayexpress (9)
EGA (6)
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ENA (1)

Tissue

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Disease

Breast cancer (3)
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Technology Type

Mass Spectrometry (19)
Bottom-up proteomics (6)
Data-dependent acquisition (6)
Shotgun proteomics (4)
Data-independent acquisition (3)
Mass spectrometry (2)
Illumina HiSeq 2000 (1)
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Chemical cross-linking coupled with mass spectrometry proteomics (1)
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Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - hilic (2)
Liquid Chromatography MS - positive - reverse phase (2)
Bruker (1)
Liquid Chromatography MS - negative - reverse phase (1)
Xevo TQ MS (Waters) (1)

Publication Date

2012 (5)
2026 (5)
2025 (5)
2014 (3)
2024 (3)
2023 (2)
2021 (2)
2020 (2)
2015 (1)
2013 (1)
2010 (1)
2022 (1)
2017 (1)

CHEBI ID

CHEBI:15361 (2)
CHEBI:15428 (2)
CHEBI:16449 (2)
CHEBI:16870 (2)
CHEBI:17126 (2)
CHEBI:17234 (2)
CHEBI:18132 (2)
CHEBI:18186 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:26271 (2)
CHEBI:26986 (2)
CHEBI:27266 (2)
CHEBI:28300 (2)
CHEBI:10056 (1)
CHEBI:102524 (1)
CHEBI:11892 (1)
CHEBI:1196 (1)
CHEBI:132481 (1)
CHEBI:132486 (1)
CHEBI:132498 (1)
CHEBI:132506 (1)
CHEBI:132646 (1)
CHEBI:135029 (1)
CHEBI:135198 (1)
CHEBI:135370 (1)
CHEBI:135654 (1)
CHEBI:136711 (1)
CHEBI:137794 (1)
CHEBI:138940 (1)

Metabolite Name

Alanine (2)
Aspartate (2)
Glutamate (2)
Glutamine (2)
Glycine (2)
Isoleucine (2)
Lactate (2)
Leucine (2)
Pantothenate (2)
Proline (2)
Threonine (2)
Tyrosine (2)
Valine (2)
()-2-Methylthiazolidine (1)
(2R,5S)-2,5-di((E)-pent-2-en-4-yn-1-yl)decahydroquinoline (1)
(S)-N-[3-(3,4-Methylenedioxyphenyl)-2-(mercaptomethyl)-1-oxoprolyl]glycine (1)
1,4-Benzenediol, 2,6-bis(1-methylethyl)-, 4-(hydrogen sulfate) (1)
1-(4-Fluorobenzyl) piperazine (1)
1-Guanidino-1-deoxy-scyllo-inositol (1)
1-Hexylglycerol* (1)
1-Methylphenanthrene (1)
1-Propanamine, N,N-dimethyl-3-(5-oxidodibenzo[b,e]thiepin-11(6H)-ylidene)-, (E)- (9CI) (1)
10-fluoro-capric acid (1)
2,2-Dihydroperoxypropane (1)
2-(1-Propenyl)-delta1-piperideine (1)
2-(9R-(15Z-docosenoyloxy)-3-methyl-2Z-decenoyloxy)-ethanesulfonic acid (1)
2-Amino-1-methyl-6-phenylimidazo[4,5-b]pyridine (1)
2-Undecyl-4(1H)-quinolinone N-oxide (1)
2-aminopimelic Acid (1)
2-hydroxyglutarate (1)

First Public Date

2014 (1)

Modification

57.021464 (1)
79.966331 (1)

Study type

RNA-seq of coding RNA (4)
ChIP-seq (3)
Transcription profiling by array (2)

Release Date

2021 (154)
2022 (143)
2023 (111)
2020 (110)
2015 (98)
2024 (87)
2025 (84)
2017 (83)
2016 (78)
2018 (77)
2014 (71)
2019 (63)
2012 (61)
2013 (59)
2011 (43)
2010 (31)
2008 (22)
2009 (17)
2026 (11)
2007 (10)
2006 (8)
2005 (5)
2003 (5)
2001 (4)
1998 (3)
2004 (2)
2002 (2)
1999 (2)
1997 (1)

Lab affiliation

WEHI (2)
ARC Centre of Excellence in Synthetic Biology (1)
Centre for Medical Research, The University of Western Australia, QEII Medical Centre, Nedlands, Western Australia 6009, Australia (1)
Danish Cancer Society Karolinska Institute (1)
Department of Biochemistry, The University of Utah, Salt Lake City, UT, USA Howard Hughes Medical Institute, University of Utah, Salt Lake City, UT, USA (1)
Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 (1)
Department of Genetics, Harvard Medical School, Boston, MA 021152 Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Boston, MA0211 Department of Cell Biology, Harvard Medical School, Boston, MA 02115 Howard Hughes Medical Institute, Boston, MA 02115 (1)
Departmet of Cardiovascular and Metabolic Sciences, Lerner Research Institute, Cleveland Clinic, Cleveland ,US (1)
Harry Perkins Institute of Medical Research and ARC Centre of Excellence in Synthetic Biology, QEII Medical Centre, Nedlands, Western Australia 6009, Australia (1)
Head of Proteomics (1)
Head, Ubiquitin Signalling Division Walter and Eliza Hall Institute of Medical Research Australia (1)
Howard Hughes Medical Institute and Department of Cell Biology Harvard Medical School 240 Longwood Avenue Boston, Massachusetts 02115, USA (1)
Humboldt-Universität zu Berlin, Institute for Biology – Bacterial Physiology, Berlin, Germany (1)
IIS Biobizkaia (1)
Institute For Systems Biology (1)
Institute of Microbiology, ETH Zurich, Switzerland (1)
Laboratório de Virologia, Faculdade de ciências e tecnologias, Universidade do Algarve, Portugal (1)
University College London (UCL) (1)

Tags

xref:PubMed:18721163 (1)

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Protons are a neurotransmitter that regulates synaptic plasticity in the lateral amygdala.

Not available

S-EPMC4066526 | biostudies-literature

Laboratory Workflow Analysis of Culture of Periprosthetic Tissues in Blood Culture Bottles.

Not available

S-EPMC5648717 | biostudies-literature

MBD5 and MBD6 couple DNA methylation to gene silencing through the J-domain protein SILENZIO.

Not available

S-EPMC8639832 | biostudies-literature

Mutational analysis of RAG1 and RAG2 identifies three catalytic amino acids in RAG1 critical for both cleavage steps of V(D)J recombination.

Not available

S-EPMC317185 | biostudies-literature

A synthetically methylotrophic Escherichia coli as a chassis for bioproduction

Proteome characterization of three E. coli strains: a methanol-dependent strain (MEvo1-0) and two synthetically methylotrophic strains (MEcoli_ref_1, MEcoli_ref_2)

ORGANISM(S): Escherichia coli

2024-02-08 | PXD046243 | Pride

NMR based metabolomics study of Y2 receptor activation by neuropeptide Y in the SK-N-BE2 human neuroblastoma cell line

Neuropeptide Y (NPY) and its Y2 receptors (Y2R) play an important role in regulating growth of various tumors and are highly expressed in human neuroblastoma brain tumors. Cell lines derived from neuroblastoma brain tumors provide a good model to study the consequences of NPY activation of Y2R in tu...

2014-10-01 | MTBLS104 | MetaboLights

Transient acidosis while retrieving a fear-related memory enhances its lability.

Not available

S-EPMC5484615 | biostudies-literature

Salicylic acid receptors activate jasmonic acid signalling through a non-canonical pathway to promote effector-triggered immunity.

Not available

S-EPMC5062614 | biostudies-literature

Transcriptiome of mouse erythroid cells (part2) poly(A)-

We report genome-wide maps of transcription in mouse erythroid cells. We used an approach to survey poly(A)+ (mRNA) (Transcriptiome of mouse erythroid cells (part1) GSE26877) and non-polyadenylated RNA separately. This provides an alternative framework for comprehensive transcriptome profiling in ma...

ORGANISM(S): Mus musculus

2012-01-30 | E-GEOD-27920 | biostudies-arrayexpress

Plant hormone jasmonate prioritizes defense over growth by interfering with gibberellin signaling cascade.

Not available

S-EPMC3358897 | biostudies-literature

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