Huh7 cells - OmicsDI

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2010 (11)
2008 (3)

UNIPROT ID/AC

1433B_HUMAN (1)
1433E_HUMAN (1)
1433F_HUMAN (1)
1433G_HUMAN (1)
1433S_HUMAN (1)
1433T_HUMAN (1)
1433Z_HUMAN (1)
2AAA_HUMAN (1)
2AAB_HUMAN (1)
2ABA_HUMAN (1)
2ABB_HUMAN (1)
2ABD_HUMAN (1)
3HIDH_HUMAN (1)
5NTC_HUMAN (1)
6PGD_HUMAN (1)
6PGL_HUMAN (1)
9606.ENSP00000291295 (1)
9606.ENSP00000322421 (1)
9606.ENSP00000347168 (1)
9606.ENSP00000348924 (1)
9606.ENSP00000349467 (1)
9606.ENSP00000352119 (1)
9606.ENSP00000352627 (1)
9606.ENSP00000355778 (1)
9606.ENSP00000358154 (1)
9606.ENSP00000358160 (1)
9606.ENSP00000362621 (1)
9606.ENSP00000364802 (1)
9606.ENSP00000366679 (1)
9606.ENSP00000366956 (1)

CHEBI ID

CHEBI:16704 (4)
CHEBI:16750 (4)
CHEBI:16335 (4)
CHEBI:20794 (3)
CHEBI:17802 (3)
CHEBI:17562 (3)
CHEBI:16020 (3)
CHEBI:17596 (3)
CHEBI:19229 (2)
CHEBI:19227 (2)
CHEBI:20607 (2)
CHEBI:48928 (2)
CHEBI:21891 (2)
CHEBI:17050 (2)
CHEBI:16040 (2)
CHEBI:16908 (2)
CHEBI:17552 (2)
CHEBI:18012 (2)
CHEBI:14314 (2)
CHEBI:78682 (2)
CHEBI:16474 (2)
CHEBI:15422 (2)
CHEBI:16761 (2)
CHEBI:16027 (2)
CHEBI:15351 (2)
CHEBI:30769 (2)
CHEBI:52117 (1)
CHEBI:20480 (1)
CHEBI:20597 (1)
CHEBI:20598 (1)

Metabolite Name

Guanosine (4)
7-methylguanosine (3)
5-methylcytidine (3)
Uridine (3)
Pseudouridine (3)
Inosine (3)
Cytidine (3)
Adenosine (3)
1-methyladenosine (3)
2'-O-methylguanosine (2)
2'-O-methyluridine (2)
4-thiouridine (2)
2'-O-methylcytidine (2)
3-phosphoglycerate (2)
6-phosphogluconate (2)
AMP (2)
ATP (2)
Uracil (2)
N6-methyladenosine (2)
ADP (2)
NADP (2)
NADPH (2)
GDP (2)
Succinate (2)
NADH (2)
Fumarate (2)
D-Ribose 5-phosphate (2)
Citrate (2)
N6-,O2'dimethyladenosine (1)
N4-Methylcytidine (1)

First Public Date

2024 (67)
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2016 (9)
2013 (5)

Classification

viruses (2)

Study type

Transcription profiling by array (109)
RNA-seq of coding RNA (19)
Other (7)
Methylation profiling by array (6)
ChIP-seq (4)
RNA-seq of total RNA (4)
Cell line - High-throughput sequencing (3)
RNA-seq of non coding RNA (3)
ChIP-chip by tiling array (2)
High-throughput sequencing (2)
DNA-seq (2)
Transcription profiling by SAGE (1)
Cell line - One-color microarray (1)
Transcription profiling by RT-PCR (1)
Genotyping by high throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (137)
2021 (122)
2020 (100)
2025 (98)
2015 (87)
2024 (85)
2023 (82)
2019 (66)
2018 (61)
2017 (61)
2016 (59)
2014 (55)
2013 (45)
2011 (44)
2012 (31)
2010 (27)
2009 (16)
2008 (12)
2026 (11)
2006 (10)
2005 (8)
2004 (6)
2002 (4)
2007 (3)
2003 (3)
2001 (1)
2000 (1)

Lab affiliation

The Key Laboratory of Molecular Biology of Infectious Diseases designated by the Chinese Ministry of Education, Chongqing Medical University, Chongqing, China. (3)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (2)
Department of Clinical Laboratory, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, China. The Key Laboratory of Molecular Biology of Infectious Diseases designated by the Chinese Ministry of Education, Chongqing Medical University, Chongqing, China. (2)
Guangzhou Medical University (2)
School of Biomedical Sciences and Department of Pathology, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Pokfulam Road, Hong Kong, P. R. China (2)
1) Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Switzerland 2) Faculty of Science, University of Zurich, Zurich, Switzerland (1)
3Division of Chemistry I, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden (1)
Aarhus University, Denmark (1)
Aix-Marseille Univ, CNRS, Developmental Biology Institute of Marseille (IBDM), Turing Center for Living Systems, Marseille, France (1)
CAS Key Laboratory of Separation Science for Analytical Chemistry, National Chromatographic R & A Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, China. (1)
CIRI, Centre International de Recherche en Infectiologie, Team Viral Infection, Metabolism and Immunity, Univ Lyon, Inserm, U1111, CNRS, UMR5308, Université Claude Bernard Lyon 1, Ecole Normale Supérieure de Lyon, 69007, Lyon, France (1)
Chair, Dept of Biochemistry, Microbiology and Immunology, University of Ottawa, Ottawa, Canada (1)
College of Pharmacy, Gachon University, 534-2 Yeonsu 3-dong, Yeonsu-gu, Incheon 406-799, Republic of Korea (1)
Core Facility for Mass Spectrometry and Proteomics, Center for Molecular Biology of Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, 69120 Heidelberg, Germany (1)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China (1)
Department of Analytical Chemistry, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China (1)
Department of Biochemistry and Molecular Biology, Health Science Center, Ningbo University, Fenghua Road No.818, Ningbo, 315211, China. (1)
Department of Infectious Diseases, Molecular Virology, Heidelberg University, Heidelberg, Germany (1)
Department of Medical Microbiology and Infection Prevention, University of Groningen; University Medical Center Groningen; Groningen, the Netherlands (1)
Department of Microbiology and Immunology University of California, San Francisco (UCSF) USA (1)
Department of Pediatric Oncology, Hematology and Immunology, Heidelberg University, Im Neuenheimer Feld 430, 69120 Heidelberg, Germany (1)
Department of Vascular Biology and Thrombosis Research, Centre of Physiology and Pharmacology, Medical University of Vienna, Schwarzspanierstrasse 17, A-1090 Vienna, Austria (1)
Departments of Chemistry and Biological Sciences, Vanderbilt University (1)
Dept. Medical Microbiology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, the Netherlands (1)
Division of Chemistry I, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden (1)
Division of Chemistry I, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden. (1)
Executive Director Instituto de Medicina Molecular Av. Prof. Egas Moniz 1649-028 Lisboa, Portugal Tel: (+351) 217 999 511 (1)
Fourth Military Medical University (1)
Fujian medical university (1)
Head of Core Facility Mass Spectrometry, Faculty of Chemistry, Philipps-University Marburg (1)

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Comparison of TCF hyper-activated and control Huh7 cells

This SuperSeries is composed of the following subset Series: GSE11912: Comparison of TCF hyper-activated and control Huh7 cells - SAGE GSE11916: Comparison of TCF hyper-activated and control Huh7 cells - microarray data Refer to individual Series

ORGANISM(S): Homo sapiens

2010-05-22 | E-GEOD-11956 | biostudies-arrayexpress

Transcription profiling of human hepatocellular carincoma-derived cell line Huh7-S33Y with high TCF activity compared to a control Huh7 cell line

The Wnt signaling pathway is involved in many differentiation events during embryonic development and can lead to tumor formation after aberrant activation of its components. Β-catenin, a cytoplasmic component, plays a major role in the transduction of the canonical wnt/ β-catenin signaling. The aim...

ORGANISM(S): Homo sapiens

2009-10-10 | E-GEOD-11916 | biostudies-arrayexpress

RNAsequencing of WT Huh7 cells and lnc122-/miR-122+ Huh7 cells

to find out the lnc122(precursor of miR-122) role as an independent lncRNA, we designed the lnc122-/miR-122+ Huh7 cells with Lenti-CRISPRi_lnc122 + lenti-CAG-miR-122 combination. lenti-CRISPRi_lnc122 suppresses endogenous lnc122 as well as miR-122 but we add back the miR-122 ectopically.

ORGANISM(S): Homo sapiens

2026-10-07 | E-MTAB-15726 | biostudies-arrayexpress

Microarray analysis of Huh7 cells treated with IFNa2, OSM or IFNa2 combined with OSM

OSM increases the antiviral effect of IFNα in Huh7 cells infected with hepatitis A virus (HAV) or HCV replicon and synergizes with IFNα in the induction of antiviral genes 16 samples. Four replicates for each experimental condition. 72 hours of treatment in DMEM supplemented with 2% FBS.

ORGANISM(S): Homo sapiens

2009-01-20 | E-GEOD-13046 | biostudies-arrayexpress

Huh7 cells exist as a mixed population of cells with distinct patterns of gene methylation

A powerful approach to study innate antiviral response is to compare the difference between wild type Huh7 cells, which do not support robust replication of hepatitis C virus (HCV)2, versus certain subclones of Huh7 cells that are permissive for HCV replication. We generated two permissive cell line...

ORGANISM(S): Homo sapiens

2013-07-03 | E-GEOD-31960 | biostudies-arrayexpress

Expression data comparing Huh7 CD133+ and CD133- HCC cells

To identify candidate genes involved in enhanced tumorigenicity of CD133+ liver tumor-initiating cells Affymetrix Human Genome U133 Plus GeneChip 2.0 HCC cell line Huh7 was sorted into CD133+ and CD133- populations by flow cytometry

ORGANISM(S): Homo sapiens

2012-04-04 | E-GEOD-23450 | biostudies-arrayexpress

Expression data comparing Huh7 control and CD47 knockdown cells

To identify candidate genes regulated by CD47 Affymetrix Human Genome U133 Plus GeneChip 2.0 HCC cell line Huh7 cells with or without CD47 repressed

ORGANISM(S): Homo sapiens

2014-06-01 | E-GEOD-47563 | biostudies-arrayexpress

Comparison of TCF hyper-activated and control Huh7 cells - SAGE

The Wnt signaling pathway is involved in many differentiation events during embryonic development and can lead to tumor formation after aberrant activation of its components. ?-catenin, a cytoplasmic component, plays a major role in the transduction of the canonical wnt/ ?-catenin signaling. The aim...

ORGANISM(S): Homo sapiens

2009-09-30 | E-GEOD-11912 | biostudies-arrayexpress

Expression levels of mature miRNAs from Huh7 cell treated with ROCK inhibitor

We used microarray to determine the miRNA whose expression was changed at 12 hours after Y27632 treatment Two-condition experiment; Huh7 control vs Huh7 treated with Y27632 for 12 hours

ORGANISM(S): Homo sapiens

2014-04-21 | E-GEOD-33876 | biostudies-arrayexpress

Expression data comparing Huh7 cells transduced with shRNA CD24 (knockdown) or non-target control

To identify CD24 signaling pathway Affymetrix Human Genome U133 Plus GeneChip 2.0 shRNA CD24 (knockdown) or non-target control (NTC) was stably transduced into Huh7 HCC cells by lentiviral approach

ORGANISM(S): Homo sapiens

2012-01-01 | E-GEOD-28057 | biostudies-arrayexpress

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