Human immunodeficiency virus

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Unknown (10632)
Transcriptomics (4073)
Genomics (768)
Proteomics (197)
Other (39)
Models (10)
Genomic (9)
Metabolomics (7)
Clinical (5)
Methylation profiling (3)

Organisms

Homo sapiens (2263)
Mus musculus (1204)
Rattus norvegicus (327)
Arabidopsis thaliana (89)
Drosophila melanogaster (64)
Macaca mulatta (60)
Saccharomyces cerevisiae (58)
Bos taurus (47)
Danio rerio (42)
Sus scrofa (41)
Gallus gallus (41)
Caenorhabditis elegans (24)
Mycobacterium tuberculosis (23)
Zea mays (18)
Oryza sativa (18)
Ovis aries (18)
Escherichia coli (17)
Streptococcus pneumoniae D39 (16)
Staphylococcus aureus (14)
Oryza sativa Japonica Group (13)
Canis lupus familiaris (13)
Schizosaccharomyces pombe (9)
Oncorhynchus mykiss (9)
Mycobacterium tuberculosis H37Rv (9)
Medicago truncatula (8)
Carassius auratus (6)
Salmo salar (6)
Glycine max (6)
Colinus virginianus (5)
Macaca nemestrina (5)

Organisms

Human immunodeficiency virus 1 (170)
Homo sapiens (106)
Macaca mulatta (18)
Human immunodeficiency virus (15)
Mus musculus (12)
Chlorocebus pygerythrus (2)
Cercocebus atys (2)
Simian-Human immunodeficiency virus (2)
Simian immunodeficiency virus (2)
Chlorocebus sabaeus (2)
Euphorbia fischeriana (1)
Carassius gibelio (1)
Talaromyces marneffei (1)
Talaromyces marneffei ATCC 18224 (1)
Mycobacterium tuberculosis H37Rv (1)
Macaca fascicularis (1)
Mammalia (1)
Salmonella enterica subsp. enterica serovar Typhimurium (1)
human blood metagenome (1)
human gut metagenome (1)
Rattus norvegicus (1)
synthetic construct (1)

Repository

biostudies-arrayexpress (4033)
geo (425)
ENA (423)
pride (80)
MassIVE (61)
EGA (34)
jPOST (11)
BioModels (9)
dbGaP (9)
MetaboLights (7)
iProX (3)
PanoramaPublic (3)
PeptideAtlas (3)
GPMDB (2)
ExpressionAtlas (1)
Cell Collective (1)
EVA (1)

Tissue

T cell (21)
Cell culture (20)
Blood plasma (9)
Blood (7)
Blood cell (5)
Macrophage (5)
Permanent cell line cell (4)
Others (3)
Blood serum (3)
Cell suspension culture (3)
Embryonic stem cell (3)
Epithelial cell (3)
Neuron (3)
B cell (2)
Blood platelet (2)
Breast cancer cell (2)
Epithelial cell of cervix (2)
Extracellular vesicle (2)
JURKAT cell (2)
Lung (2)
Microglial cell (2)
Semen (2)
T-lymphocyte (2)
Urine (2)
Astrocyte (1)
Bone marrow (1)
Brain (1)
Cerebrospinal fluid (1)
HeLa cell (1)
IgG short lived plasma cell (1)

Disease

Normal (8)
Breast cancer (5)
Human immunodeficiency virus infectious disease (3)
HIV (2)
Testicular seminoma (1)
Aviremic HIV (1)
CLL (1)
Arrhythmias and right ventricular dysfunction (1)
GIP-dependent Cushing's syndrome (1)
HPV positive (1)
HIV encephalitis (1)
Osteosarcoma subtype fibroblastic (1)
HIV-1 and Neisseria gonorrhoeae infected (1)
High grade glioblastoma (1)
Cocaine addiction (1)
HIV-1 seropositive (1)
HIV-associated dementia (1)
Acute HIV-1 infection (1)
Primary effusion lymphoma (PEL) (1)
DNA damage (1)
Uninfected (1)
HIV and HCV coinfected (1)
HIV-1 seronegative (1)
Schizophrenia (1)
AIDS-KS, HIV+, nodular (late) stage (1)
Acute myelomonocytic leukaemia (1)
HIV-Tuberculosis with Immune Reconstitution Inflammatory Syndrome (1)
Leukemia (1)
Exposed_Seronegative (1)
HIV viral load > 750000 copies /ml (1)

Technology Type

Mass Spectrometry (80)
Shotgun proteomics (40)
Bottom-up proteomics (12)
Affinity purification coupled with mass spectrometry proteomics (8)
Data-dependent acquisition (8)
Gel-based experiment (8)
Mass spectrometry (7)
Data-independent acquisition (6)
SWATH MS (5)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
SRM/MRM (3)
Illumina HiSeq 2000 (2)
MSE (2)
Top-down proteomics (2)
Human Cardio Metabochip (1)
Illumina HiSeq 2500 (1)
Affinity proteomics (1)
All-ion fragmentation (1)
DiaPASEF (1)
HDMSE (1)
Immunopeptidomics (1)
Mass spectrometry imaging (1)
Olink affinity proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (22)
Illumina HiSeq 2500 (20)
NextSeq 500 (18)
Illumina HiSeq 4000 (11)
Illumina MiSeq (9)
Illumina HiSeq 2000 (9)
Illumina Genome Analyzer II (4)
PromethION (3)
Sequel (2)
Illumina Genome Analyzer IIx (2)
Illumina NovaSeq X (2)
Illumina MiniSeq (2)
BGISEQ-500 (2)
NextSeq 550 (2)
Illumina HiSeq 3000 (2)
NanoString nCounter (1)
AB 310 Genetic Analyzer (1)
HTG EdgeSeq Processor; Applied Biosystems 7500 fast Real-time PCR Instrument (1)
Agilent 2100 Bioanalyzer, Applied Biosystems 7900HT Sequence Detection System, Illumina TruSeq Small RNA Sample Preparation Kit (1)
RNeasy mini Kit, Ribo-Zero Human/Mouse/Rat kit (1)
Applied Biosciences (1)
Qubit instrument, DNA HS kit (1)
High Sensitivity DNA kit (1)
BioRad SureCell (1)
Solexa 2G Genome Analyzer (1)
MoFlo Legacy cell sorter (Beckman Coulter) (1)
PC (1)
HiSeq X Five (1)
None (1)
Unspecified (1)

Publication Date

2015 (716)
2010 (649)
2013 (590)
2014 (509)
2012 (479)
2011 (477)
2016 (215)
2008 (213)
2009 (164)
2007 (95)
2021 (67)
2022 (64)
2025 (51)
2024 (49)
2020 (45)
2019 (44)
2017 (38)
2018 (33)
2005 (29)
2026 (29)
2006 (25)
2023 (24)
2004 (13)
2003 (6)
2002 (2)

UNIPROT ID/AC

A5A3E0 (3)
B4DPR2 (3)
B4E3A4 (3)
C9JSZ1 (3)
I3L4N8 (3)
J3KPS3 (3)
O00151 (3)
P00441 (3)
P02768 (3)
P04075 (3)
P04075-2 (3)
P04350 (3)
P07437 (3)
P07737 (3)
P08670 (3)
P09382 (3)
P09429 (3)
P0CG38 (3)
P11142 (3)
P13639 (3)
P13796 (3)
P14618 (3)
P14618-2 (3)
P18669 (3)
P21333 (3)
P21333-2 (3)
P26583 (3)
P33316 (3)
P33316-2 (3)
P48643 (3)

CHEBI ID

CHEBI:72663 (3)
CHEBI:616988 (2)
CHEBI:33270 (2)
CHEBI:8087 (2)
CHEBI:24462 (2)
CHEBI:22470 (2)
CHEBI:70958 (2)
CHEBI:17992 (2)
CHEBI:17033 (2)
CHEBI:72998 (2)
CHEBI:16552 (2)
CHEBI:16113 (2)
CHEBI:26984 (2)
CHEBI:17553 (2)
CHEBI:33508 (2)
CHEBI:20392 (2)
CHEBI:30882 (2)
CHEBI:48430 (2)
CHEBI:6909 (2)
CHEBI:18132 (2)
CHEBI:16344 (2)
CHEBI:30865 (2)
CHEBI:16797 (2)
CHEBI:17802 (2)
CHEBI:17533 (2)
CHEBI:16708 (2)
CHEBI:17927 (2)
CHEBI:74532 (2)
CHEBI:17724 (2)
CHEBI:28867 (2)

Metabolite Name

Taurocholic acid (2)
Gentamicin C1a (gentamycin C1a) (1)
SM(d18:1/24:2) (1)
SM(d18:1/18:2) (1)
PE(O-38:7) (1)
Lacto-N-difucohexaose I (1)
Cyclo(pro-arg)* (1)
Ritonavir (1)
Efavirenz (1)
Lacto-N-neotetraose (1)
Lacto-N-fucopentaose I (1)
Nimesulide (1)
Glucuronate 1-phosphate* (1)
Isoniazid (1)
3-phosphoserine (1)
Isoxanthopterin (1)
Lacto-N-fucopentaose V (1)
Lacto-N-fucopentaose III (1)
Lacto-N-fucopentaose II (1)
Lactulose (1)
Lopinavir (1)
Lactobionate (1)
(+)-cis-Isopulegone (1)
PE(O-36:5) (1)
Vanilloylglycine (1)
Lactodifucotetraose (1)
6-sialyl-N-acetyllactosamine (1)
3-fucosyllactose (1)
4-Chloro-17alpha-methyl-17beta-hydroxy-4-androsten-3-one (1)
Beta-Carotene (1)

First Public Date

2020 (63)
2024 (42)
2014 (40)
2026 (37)
2025 (33)
2021 (30)
2022 (29)
2016 (29)
2019 (26)
2015 (23)
2017 (19)
2013 (19)
2023 (16)
2018 (13)
2012 (2)
2011 (2)

Modelling Approach

Ordinary differential equation model (7)
Computational model (2)

Study status

Completed (3)
Terminated (1)
Recruiting (1)

Lab affiliation

University of California San Francisco (2)
1Department of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, Los Angeles, CA, USA 2Institute for Quantitative and Computational Biosciences, University of California, Los Angeles, Los Angeles, CA, USA 3Molecular Biology Institute, University of California, Los Angeles, Los Angeles, CA, USA (1)
1Department of Pathology, Johns Hopkins University, Baltimore, Maryland 21287, USA (1)
Assistant Professor, Department of Biochemistry, University of Washington, Seattle, Washington 98195, USA (1)
Associate Professor Systems Virology Department of Translation medicine Faculty of Medicine Lund University Sweden (1)
Associate Professor in Virology Head of Systems Virology group Department of Translational Medicine Lund University (1)
BioOrganic Mass Spectrometry laboratory (LSMBO) Institut Plurisciplinaire Hubert Curien University of Strasbourg. France (1)
Cambridge Institute for Medical Research, Univeristy of Cambridge (1)
Cambridge Institute for Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge, UK (1)
Center for Integrative Genomics, University of Lausanne, Switzerland (1)
Center for Proteomics and Metabolomics, Leiden University Medical Center, The Netherlands (1)
Centre for Proteome Research, University of Liverpool (1)
Centre for Virus Research, University of Glasgow (1)
Centro de Pesquisa em Virologia (CPV) and Departamento de Biologia Celular e Molecular, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo, Ribeirão Preto, SP, Brazil (1)
Charles Perkins Centre, School of Medical Sciences, University of Sydney, Sydney, Australia. (1)
China Medical University (1)
Chromatin Structure & Mobile DNA Laboratory, The Francis Crick Institute, London, NW1 1AT, UK. (1)
Department of Biochemistry and Microbiology, University of Chemistry and Technology, Prague, Technická 5, 166 28 Prague, Czech Republic (1)
Department of Biochemistry and Molecular Biology, Lipoproteins and Atherosclerosis Monash University, Australia Baker Heart and Diabetes Institute, Australia (1)
Department of Biochemistry and Molecular Biology, University of Debrecen, Hungary (1)
Department of Biochemistry, University of Washington, Seattle, Washington 98195, USA (1)
Department of General Internal Medicine, Radboud University Medical Center, Nijmegen, The Netherlands (1)
Department of Integrative Biomedical Science, Blackburn Group, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, South Africa (1)
Department of Integrative Biomedical Sciences, Blackburn Group, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, South Africa (1)
Department of Medicine, University of Cambridge, Cambridge Biomedical Campus, Cambridge, CB2 0XY, UK (1)
Department of Microbiology; Icahn School of Medicine at Mount Sinai; New York, NY, 10029; USA (1)
Department of Molecular Genetics, University of Toronto, Toronto, ON, Canada, M5S 1A8 (1)
Department of Molecular Medicine, The Scripps Research Institute, Jupiter, FL 33458, USA. (1)
Department of Molecular Medicine, The Scripps Research Institute, La Jolla, California 92037 United States (1)
Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA 21287 (1)

Keyword

Diabete Mellitus (1)
Sickle Cell Disease (1)
Sjogren’s Syndrome (1)
Increased Screening Uptake (1)
Community Health Worker (1)
Medically Underserved (1)
Mycophenolic Acid (1)
Cyclosporine (1)
Fludarabine (1)
Fludarabine phosphate (1)
Cyclosporins (1)

IsPrivate

False (9)

Model Flag

Non Miriam (1)

Submitter Keywords

Ersilia (2)
FAIR-AIML (2)
Machine Learning Model (2)

Classification

viruses (189)
fungi (2)
bacteria (2)

Modification

Not available (1)

Study type

Transcription profiling by array (2882)
RNA-seq of coding RNA (486)
Unknown experiment type (127)
RNA-seq of non coding RNA (92)
Other (63)
Methylation profiling by array (54)
Comparative genomic hybridization by array (52)
ChIP-seq (44)
ChIP-chip by tiling array (40)
Transcription profiling by SAGE (34)
Transcription profiling by RT-PCR (28)
Proteomic profiling by array (23)
Transcription profiling by tiling array (17)
RNA-seq of coding RNA from single cells (15)
Methylation profiling by high throughput sequencing (11)
Genotyping by array (9)
Cell line - High-throughput sequencing (7)
MicroRNA profiling by high throughput sequencing (7)
DNA-seq (6)
High-throughput sequencing (5)
RNAi profiling by array (5)
Animal - High-throughput sequencing (3)
ChIP-chip by array (3)
Genotyping by high throughput sequencing (3)
Human - High-throughput sequencing (2)
Cell line - One-color microarray (2)
RNA-seq of total RNA (2)
ChIP-chip by SNP array (1)
Transcription profiling by MPSS (1)
Cell line - Single-cell sequencing (1)

Release Date

2015 (1194)
2014 (909)
2010 (890)
2021 (879)
2022 (867)
2013 (863)
2023 (785)
2020 (755)
2016 (743)
2012 (739)
2011 (725)
2025 (621)
2018 (616)
2019 (601)
2024 (588)
2017 (580)
2009 (444)
2008 (439)
2007 (314)
2006 (193)
2005 (171)
2004 (131)
2003 (124)
2002 (102)
2001 (100)
2000 (80)
1998 (79)
1999 (69)
2026 (58)
1997 (3)

Location

United States (4)
Thailand (1)

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Fetal Metabolic Stress Disrupts Immune Homeostasis and Induces Proinflammatory Responses in Human Immunodeficiency Virus Type 1- and Combination Antiretroviral Therapy-Exposed Infants

Increased morbidity and fetal growth restriction are reported in uninfected children born to human immunodeficiency virus type 1 (HIV-1)–infected women treated with antiretroviral (ARV) therapy. Viruses and/or pharmacological interventions such as ARVs can induce metabolic stress, skewing the cell’s...

2018-06-06 | MTBLS449 | MetaboLights

Comparative Expression Profile of miRNA and mRNA in Primary Peripheral Blood Mononuclear Cells Infected with Human Immunodeficiency Virus (HIV-1)

This SuperSeries is composed of the following subset Series: GSE33837: Comparative Expression Profile of miRNA and mRNA in Primary Peripheral Blood Mononuclear Cells Infected with Human Immunodeficiency Virus (HIV-1) [miRNA] GSE33877: Comparative Expression Profile of miRNA and mRNA in Primary Perip...

ORGANISM(S): Homo sapiens

2011-11-23 | E-GEOD-33879 | biostudies-arrayexpress

Human immunodeficiency virus

Human immunodeficiency virus Genome Sequencing

PRJNA72163 | ENA

Human Immunodeficiency Virus Tat Directly Interacts with a Specific Set of Cellular RNAs

We have used RNA immunoprecipitation to identify the set of mRNAs that HIV-1 Tat interacts with in T-cells. We have also performed measurements of relative RNA abundance to determine if Tat binding is associated with an increase in RNA abundance in Tat-expressing T-cells and during HIV infection of ...

ORGANISM(S): Homo sapiens

2013-11-05 | E-MEXP-3199 | biostudies-arrayexpress

Human immunodeficiency virus 1

Human immunodeficiency virus 1 Raw sequence reads

PRJNA1109555 | ENA

Human immunodeficiency virus 1

Human immunodeficiency virus 1 Raw sequence reads

PRJNA562389 | ENA

FIV host cell response

Transcriptional profiling of the host cell response to feline immunodeficiency virus (FIV) infection. Feline T-cells were infected with FIV and virus-induced gene expression changes were investigated at 24 hours post infection.

ORGANISM(S): Felis catus

2014-02-02 | E-MTAB-2083 | biostudies-arrayexpress

Human immunodeficiency virus 1

Human immunodeficiency virus 1 Genome sequencing and assembly

PRJNA302659 | ENA

Comparative Expression Profile of miRNA and mRNA in Primary Peripheral Blood Mononuclear Cells Infected with Human Immunodeficiency Virus (HIV-1) [miRNA]

Host cells respond to exogenous infectious agents such as viruses, including HIV-1. Studies have evaluated the changes associated with virus infection at the transcriptional and translational levels of the cellular genes involved in specific pathways. While this approach is useful, in our view it pr...

ORGANISM(S): Homo sapiens

2011-11-23 | E-GEOD-33837 | biostudies-arrayexpress

Comparative Expression Profile of miRNA and mRNA in Primary Peripheral Blood Mononuclear Cells Infected with Human Immunodeficiency Virus (HIV-1) [mRNA]

ORGANISM(S): Homo sapiens

2011-11-23 | E-GEOD-33877 | biostudies-arrayexpress

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15743 Results

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