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Unknown (2531)
Transcriptomics (80)
Genomics (64)
Multiomics (56)
Proteomics (37)
Metabolomics (4)
Clinical (1)

Organisms

Homo sapiens (89)
Aerococcus urinae NBRC 15544 = CCUG 36881 (34)
Allexis (34)
Apostichopus japonicus (34)
Canis lupus familiaris (34)
Carya cathayensis (34)
Clostridioides difficile 630 (34)
Cyanophora paradoxa (34)
Ensifer adhaerens (34)
Enterococcus faecalis (34)
Globicatella sanguinis (34)
Histomonas meleagridis (34)
Human immunodeficiency virus 1 (34)
Listeria monocytogenes (34)
Marchantia polymorpha (34)
Methylohalobius crimeensis 10Ki (34)
Mus musculus (34)
Mus musculus (27)
Apis mellifera (6)
Pan troglodytes (3)
Mycobacterium tuberculosis (3)
Rattus norvegicus (2)
Arabidopsis thaliana (2)
Salmonella enterica (1)
Macaca mulatta (1)
Caenorhabditis elegans (1)
Escherichia coli (1)
Gallus gallus (1)
Saccharomyces cerevisiae (1)
Drosophila melanogaster (1)

Organisms

Medicago truncatula (1)

Repository

biostudies-arrayexpress (86)
LINCS (56)
EGA (54)
pride (34)
MetaboLights (4)
ENA (4)
iProX (1)
MassIVE (1)
PanoramaPublic (1)

Tissue

Heart (3)
Liver (3)
Cardiac muscle tissue of ventricle (2)
Cell culture (2)
Root (2)
Blood cell (1)
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Cell suspension culture (1)
Cerebellum (1)
Colon (1)
Epithelial cell (1)
Epithelial cell line (1)
Foreskin fibroblast (1)
Hippocampus (1)
JURKAT cell (1)
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Neocortex (1)
Permanent cell line cell (1)
Plant cell (1)
Regular ventricular cardiac myocyte (1)
Rheumatoid arthritis disease specific synovial fluid (1)
Serum (1)
Shoot (1)
Soleus (1)
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Tibialis anterior (1)
White adipose tissue (1)
Whole body (1)

Disease

Cardiovascular system disease (3)
Huntington's disease mouse model (1)
Gastric adenocarcinoma (1)
Acute leukemia (1)
Disease free (1)
Huntington Disease (1)
Malignant neoplasm of ovary (1)
Toxoplasmosis (1)

Technology Type

Fluorescence intensity (56)
KINOMEscan (56)
Mass Spectrometry (34)
Shotgun proteomics (14)
Gel-based experiment (12)
Illumina 15K (8)
Mass spectrometry (4)
Bottom-up proteomics (4)
Data-dependent acquisition (4)
Affinity purification coupled with mass spectrometry proteomics (2)
Illumina (various), Illumina (Various) (1)
Illumina HiSeq 2000, ILLUMINA, Illumina HiSeq 2500 (1)
Illumina 1.2M, Affymetrix 6.0, Affymetrix 6.0 - CHIAMO (1)
Illumina 1.2M, Illumina 610K Quad, Affymetrix 6.0 (1)
Illumina 1.2M, Affymetrix 6.0 (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
Affymetrix 6.0 (1)
Affymetrix 6.0, Illumina_670k - Illuminus, Illumina 1.2M (1)
Illumina Genome Analyzer II (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
Top-down proteomics (1)

Instrument Platform

Axon GenePix 4000B scanning hardware (6)
Illumina HiSeq 2000 (6)
Q Exactive (3)
Affymetrix GeneChip(R) HT Scanner (2)
Affymetrix GeneChip Scanner 3000 7G (2)
454 GS FLX+ (2)
Illumina Genome Analyzer IIx (1)
NanoDrop (1)
Bellco roll-in incubator (1)
Illumina NovaSeq X (1)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
6550 iFunnel Q-TOF LC/MS (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)

Publication Date

2016 (65)
2012 (13)
2026 (13)
2010 (10)
2014 (9)
2019 (8)
2023 (8)
2020 (7)
2015 (7)
2009 (7)
2025 (5)
2017 (5)
2008 (5)
2022 (3)
2021 (3)
2013 (3)
2011 (3)
2024 (3)
2007 (2)
2006 (1)
2018 (1)

CHEBI ID

CHEBI:17768 (4)
CHEBI:73087 (4)
CHEBI:24266 (4)
CHEBI:17822 (4)
CHEBI:26271 (4)
CHEBI:25094 (4)
CHEBI:18237 (4)
CHEBI:17126 (4)
CHEBI:27570 (4)
CHEBI:18186 (4)
CHEBI:16811 (4)
CHEBI:43580 (4)
CHEBI:16244 (4)
CHEBI:28044 (4)
CHEBI:17154 (4)
CHEBI:17568 (4)
CHEBI:17750 (4)
CHEBI:15891 (4)
CHEBI:28834 (4)
CHEBI:29016 (4)
CHEBI:16704 (4)
CHEBI:78320 (4)
CHEBI:27897 (4)
CHEBI:15354 (4)
CHEBI:17368 (4)
CHEBI:133677 (3)
CHEBI:90344 (3)
CHEBI:68505 (3)
CHEBI:133186 (3)
CHEBI:133469 (3)

Metabolite Name

Uridine (4)
Taurine (4)
Serine (4)
Proline (4)
Lysine (4)
Glutamate (4)
Arginine (4)
Histidine (4)
Xanthine (4)
Phenylalanine (4)
Tyrosine (4)
Methionine (4)
Lactate (4)
Uracil (4)
Palmitoylcholine (3)
Beta-citrylglutamate (3)
Isoleucylglycine (3)
N-methylproline (3)
Cysteinylglycine (3)
Catechol sulfate (3)
3-hydroxypyridine sulfate (3)
2-aminophenol sulfate (3)
Quinate (3)
Trimethylamine N-oxide (3)
Threonate (3)
Thioproline (3)
Stachydrine (3)
Sphinganine (3)
S-1-pyrroline-5-carboxylate (3)
Ribitol (3)

First Public Date

2018 (2)
2024 (1)
2019 (1)

Study status

Recruiting (1)

Study type

Transcription profiling by array (50)
RNA-seq of coding RNA (14)
ChIP-seq (5)
Animal - One-color microarray (3)
RNA-seq of non coding RNA (3)
Unknown experiment type (2)
ChIP-chip by tiling array (1)
Cell line - One-color microarray (1)
Comparative genomic hybridization by array (1)
Other (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)
Genotyping by high throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)
Interventional (1)

Release Date

2025 (281)
2021 (243)
2022 (228)
2024 (223)
2023 (222)
2020 (186)
2019 (157)
2018 (152)
2017 (130)
2015 (114)
2016 (107)
2014 (104)
2013 (91)
2012 (79)
2011 (66)
2010 (66)
2009 (53)
2008 (33)
2026 (30)
2007 (15)
2005 (12)
2006 (10)
2004 (7)
2003 (2)
2002 (2)
2001 (2)
2000 (2)

Lab affiliation

Associate Member, St. Jude Faculty Developmental Neurobiology St. Jude Children's Research Hospital Memphis, TN-38105 (10)
Executive Science Officer, BioFrontiers InstituteDistinguished ProfessorProfessor, Howard Hughes Medical Institute MOLECULAR CELLULAR AND DEVELOPMENTAL BIOLOGY CU DENVER SCHOOL OF MEDICINE (3)
Associate Member Developmental Neurobiology St. Jude Children's Research Hospital (2)
BioBix, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, Ghent, Belgium (1)
Centre de recherche du Centre Hospitalier Universitaire (CHU) de Quebec-Université Laval, Québec, QC, Canada Centre de recherche sur le cancer de l’Université Laval, Québec, QC, Canada PROTEO-Quebec Network for Research on Protein Function, Engineering, and Applications, Québec, QC, Canada Department of Molecular Biology, Medical Biochemistry and Pathology, Université Laval, Québec, QC, Canada (1)
Department of Insect Symbiosis, Max Planck Institute for Chemical Ecology, 07745 Jena, Germany (1)
Department of Molecular Medicine The Scripps Research Institute (1)
Department of Pharmaceutical Sciences, School of Phamarcy and Pharmaceutical Sciences, SUNY at Buffalo (1)
Department of Plant Molecular Biology, University of Lausanne, 1015 Lausanne, Switzerland (1)
Discovery Biology, AstraZeneca Pharmaceuticals (1)
Faculty of Biology, St. Petersburg State University (SPbSU), 199034, Universitetskaya em., 7/9, St. Petersburg, Russia (1)
Institute of Science and Technology in Medicine, Keele Univeristy, Keele, Staffordshire, UK Robert Jones and Agnes Hunt Orthopaedic Hospital, Oswestry, Shropshire, UK (1)
Mass Spectrometry Facility, Max Perutz Labs Vienna, University of Vienna, Vienna Biocenter, Dr.-Bohr-Gasse 7, 1030 Vienna (1)
Mass Spectrometry and Proteomics Science Technology Platform, Francis Crick Institute, LONDON NW1 1AT, UK (1)
Proteomics and Cancer Cell Signaling Unit, German Cancer Research Center, Heidelberg,Germany (1)
School of Chemistry and Molecular Biosciences, The University of Queensland (1)
Signalling in Apicomplexan Parasites Laboratory, The Francis Crick Institute, London NW1 1AT, UK (1)
Sir Peter MacCallum Department of Oncology, Peter MacCallum Cancer Centre, The University of Melbourne, Victoria 3000, Australia (1)
Spanish National Center for Biotechnology (CNB-CSIC) (1)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (1)
Structural Genomics Consortium, University of Toronto, Toronto ON M5G 1L7, Canada. Tel.: 416-946-0881 E-mail: cheryl.arrowsmith@uhnresearch.ca (1)
Vanderbilt University (1)

Location

India (1)

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S-Trap eliminates Pluronic F68 and cell culture media polymers for effective proteomic analysis of mammalian cell bioreactor supernatants

Proteomic analysis of bioreactor supernatants can inform on cellular metabolic status, viability, and productivity, as well as product quality, which can in turn help optimize bioreactor operation. Incubating mammalian cells in bioreactors requires the addition of polymeric surfactants such as Pluro...

ORGANISM(S): Homo sapiens (Human) Saccharomyces cerevisiae (Baker's yeast)

2020-06-30 | PXD017214 | Pride