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TranscriptomicsElimination of hydrogenase post-translational modification blocks H2 production and increases ethanol yield in Clostridium thermocellum
Clostridium thermocellum is a leading candidate organism for implementing a consolidated bioprocessing (CBP) strategy for biofuel production due to its native ability to rapidly consume cellulose and its existing ethanol production pathway. C. thermocellum converts cellulose and cellobiose to lactat...
ORGANISM(S): Clostridium thermocellum DSM 1237 
2014-01-15 | E-GEOD-54082 | biostudies-arrayexpress
TranscriptomicsGene expression of D. vulgaris Hildenborough grown on an iron electrode under cathodic protection conditions
The gene expression profile of wild-type Desulfovibrio vulgaris grown on cathodic hydrogen, generated at an iron electrode surface with an imposed negative potential of -1.1 V (cathodic protection conditions). The gene expression profile of cells grown on cathodic hydrogen was compared to that of ce...
ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough 
2010-05-26 | E-GEOD-10388 | biostudies-arrayexpress
ProteomicsProteome Analysis of Methanococcus maripaludis
The microbiologically influenced corrosion is one of the serious problems in petroleum tanks. It was found that the methanogenic archaea Methanococcus maripaludis OS7 isolated from the inside of petroleum tanks has the iron corrosive property. To identify the genes related to the iron corrosion, we ...
ORGANISM(S): Methanococcus Maripaludis 
2018-10-04 | PXD010311 | JPOST Repository
TranscriptomicsPyruvate fermentation vs Lactate-Sulfate
In order to obtain a global view of energy metabolism pathways of the sulfate-reducer Desulfovibrio vulgaris Hildenborough and the proteins involved therein whole-genome microarrays were used to compare the transcriptional response of cells grown with hydrogen/sulfate, pyruvate/sulfate, lactate/thio...
ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough 
2008-05-31 | E-GEOD-8015 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of E. coli TG1/pBS(Kan)Synhox and pBS(Kan) ability to produce hydrogen
E. coli TG1 with pBS(Kan)Synhox can produce more hydrogen than TG1/pBS(Kan). To reveal the difference of metabolic activity (gene expression) between these strains in producing hydrogen, the differential gene expression analyses were performed. All samples cultured in complex medium with fructose ...
ORGANISM(S): Escherichia coli 
2008-06-14 | E-GEOD-5905 | biostudies-arrayexpress
TranscriptomicsPyruvate vs Lactate as electron donor in Sulfate reduction
In order to obtain a global view of energy metabolism pathways of the sulfate-reducer Desulfovibrio vulgaris Hildenborough and the proteins involved therein whole-genome microarrays were used to compare the transcriptional response of cells grown with hydrogen/sulfate, pyruvate/sulfate, lactate/thio...
ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough 
2008-05-31 | E-GEOD-8071 | biostudies-arrayexpress
TranscriptomicsThiosulfate vs Sulfate as electron acceptor in Sulfate reduction
In order to obtain a global view of energy metabolism pathways of the sulfate-reducer Desulfovibrio vulgaris Hildenborough and the proteins involved therein whole-genome microarrays were used to compare the transcriptional response of cells grown with hydrogen/sulfate, pyruvate/sulfate, lactate/thio...
ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough 
2008-05-31 | E-GEOD-8072 | biostudies-arrayexpress
TranscriptomicsHydrogen vs Lactate as electron donor in Sulfate reduction
In order to obtain a global view of energy metabolism pathways of the sulfate-reducer Desulfovibrio vulgaris Hildenborough and the proteins involved therein whole-genome microarrays were used to compare the transcriptional response of cells grown with hydrogen/sulfate, pyruvate/sulfate, lactate/thio...
ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough 
2008-05-31 | E-GEOD-8037 | biostudies-arrayexpress
TranscriptomicsScreening of a novel strong promoter by RNA sequencing and its application to H2 production in a hyperthermophilic archaeon
A strong promoter increases transcription of the genes of interest and enhances the production of various valuable substances. For a hyperthermophilic archaeon Thermococcus onnurineus NA1, which can produce H2 by carbon monoxide oxidation, we searched for a novel endogenous strong promoter by transc...
ORGANISM(S): Thermococcus onnurineus NA1 
2015-04-28 | E-GEOD-64036 | biostudies-arrayexpress
ProteomicsAbsolute quantification of selected photosynthetic electron transfer proteins in Chlamydomonas reinhardtii in the presence and absence of oxygen
The absolute amount of plastocyanin (PC), ferredoxin-NADP+-oxidoreductase (FNR), hydrogenase (HYDA1) and ferredoxin 5 (FDX5) were quantified in aerobic and anaerobic Chlamydomonas reinhardtii whole cells using purified (recombinant) proteins as internal standard in a mass spectrometric approach. Qua...
ORGANISM(S): Chlamydomonas reinhardtii 
2022-02-23 | PXD008313 | Pride
Ferredoxin-nadp+-oxidoreductase Plastocyanin Ferredoxin 5 Hydrogenase Absolute quantification Chlamydomonas reinhardtii 
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