Hypocotyl growth

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Technology Type

Mass Spectrometry (29)
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UNIPROT ID/AC

O80536 (1)
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CHEBI ID

CHEBI:15741 (4)
CHEBI:18012 (4)
CHEBI:16119 (3)
CHEBI:16857 (3)
CHEBI:16828 (3)
CHEBI:17203 (3)
CHEBI:16414 (3)
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CHEBI:16865 (3)
CHEBI:30915 (3)
CHEBI:32398 (2)
CHEBI:27432 (2)
CHEBI:30805 (2)
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CHEBI:30746 (2)
CHEBI:15901 (2)
CHEBI:16708 (2)
CHEBI:15729 (2)
CHEBI:15971 (2)
CHEBI:17196 (2)
CHEBI:17295 (2)
CHEBI:17115 (2)
CHEBI:18050 (2)
CHEBI:33198 (2)
CHEBI:17053 (2)
CHEBI:26078 (2)
CHEBI:17992 (2)
CHEBI:17351 (2)
CHEBI:15756 (2)
CHEBI:17191 (2)

Metabolite Name

L-ornithine (2)
Myo-inositol (2)
Succinate (2)
Fumarate (2)
Glycine (2)
L-phenylalanine (2)
L-threonine (2)
Oxalate (1)
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Glucitol (1)
D-erythrose (1)
Carbamate (1)
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2,6-dihydroxyphenylacetate (1)
(9Z)-octadecenoic acid (1)
(9E)-octadecenoic acid (1)
Sorbitol-6-phosphate (1)
D-fructose (1)
1,5-anhydrosorbitol (1)
D-ribose (1)
D-xylose (1)
Oxoglutaric acid (1)
Phenylhydrazine (1)
Cholesterol-D7 (1)
Hexadecanoic acid-13C4 (1)
Myristic acid-13C3 (1)
L-proline-13C5 (1)
L-lactic acid (1)
L-cysteine (1)
Thiamin (1)

First Public Date

2014 (17)
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Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou 310027, China (2)
Institute of Crop Science (1)
University of Cologne CEPLAS/ Institute for Plant Sciences Plant Metabolic Biochemistry Lab Center of Molecular Biosciences (CoMB), Room 3.10 Zülpicher Straße 47a D-50674 Cologne Germany (1)
Biological and Environmental Science and Engineering Division, Center for Desert Agriculture, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia (1)
Key Laboratory of Plant Germplasm Enhancement and Speciality Agriculture, Sino-African Joint Research Center, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China (1)
National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan (1)
Chief Scientist, National Institute of Crop Science, Tsukuba, Japan (1)
LIST_Environmental and industrial biotechnologies Bioprocessing and formulation L-4940, BASCHARAGE LUXEMBOURG (1)
Institute of Plant and Microbial Biology, Academia Sinica (1)
Donald Danforth Plant Scinece Center (1)
NARO Institute of Crop Science (1)
Luxemburg Institute of Science and Technology (1)
VIB-UGent Center for Plant Systems Biology (1)
National Institute of Crop Science (1)
Center for Plant Molecular Biology (ZMBP) Plant Physiology University of Tübingen Tübingen Germany (1)
Frontiers Science Center for Cell Responses, Department of Plant Biology and Ecology, College of Life Sciences, Nankai University, 300071 Tianjin, China. (1)
NARO Institute of Crop Science, Tsukuba, Japan. (1)
Institute of Molecular, Cell and Systems Biology, University of Glasgow, UK (1)
Frontiers Science Center for Cell Responses, Department of Plant Biology and Ecology, College of Life Sciences, Nankai University, 300071 Tianjin, China (1)
Institute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan (1)
Institute of Plant and Microbial Biology (1)
Mendel University in Brno (1)
NARO Institute of Crop Science, Tsukuba, Japan (1)
Shandong Agricultural University (1)
Plant system biolog of Ugent-VIB (1)
Mass Spectrometry Laboratory, Institute of Biochemistry and Biophysics, Polish Academy of Sciences (1)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)

IsPrivate

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Classification

bacteria (1)

Study type

Transcription profiling by array (377)
RNA-seq of coding RNA (37)
MicroRNA profiling by array (24)
ChIP-seq (9)
ChIP-chip by tiling array (3)
Methylation profiling by array (2)
RNA-seq of non coding RNA (2)
Transcription profiling by SAGE (1)
Unknown experiment type (1)
Animal - One-color microarray (1)
Plant - High-throughput sequencing (1)
High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Other (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2013 (80)
2012 (76)
2014 (68)
2015 (61)
2011 (59)
2010 (58)
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2020 (45)
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2008 (27)
2009 (26)
2007 (20)
2006 (11)
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2005 (8)
2004 (2)
2001 (2)
1999 (2)
1998 (2)
2003 (1)
2000 (1)
1997 (1)

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Identification of molecular factors explaining decreased hypocotyl growth at low temperature

affy_hypoctemp_medicago - The characterization of several genotypes of the model Legume Medicago truncatula showed a genetic variability for germination and hypocotyl heterotrophic growth at low temperature and optimal temperature. The most important contrast was between the accessions Jemalong A17 ...

ORGANISM(S): Medicago truncatula

2010-09-10 | E-GEOD-18449 | biostudies-arrayexpress

Proteomics Analysis of Soybean Hypocotyl during Recovery after Flooding Stress

Soybean (Glycine max L. cv Enrei) seeds were sterilized with 2% sodium hypochlorite solution and then thoroughly rinsed in water. The sterilized seeds were sown 4 cm inside surface of sand in 450 mL of quartz seedling cases wetted with 150 mL water and grown at 25°C and 70% humidity in a growth cham...

ORGANISM(S): Glycine max

2015-05-26 | PXD001567 | Pride

Proteomic analysis of soybean root including hypocotyl during recovery after drought stress

Soybean is a nutritionally important crop that exhibits reductions in growth and yields under drought stress. To investigate soybean responses during post-drought recovery, a gel-free proteomic technique was used to examine the protein profile. Two-day-old soybeans were stressed with drought for 4 d...

ORGANISM(S): Glycine max

2016-06-16 | PXD003650 | Pride

Proteomics Recovery Root Soybean Drought

Transcription profiling of Arabidopsis circadian and light signaling mutants lux-2, lhy and phyB-9 in a time series over either intermediate or short days

Arabidopsis thaliana circadian and light signaling mutants have long hypocotyls under light/dark cycles. In order to determine if aberrant hypocotyl growth is due to time of day specific miss-expression of growth associated transcripts we conducted time course microarray experiments in the lux-2, l...

ORGANISM(S): Arabidopsis thaliana

2008-10-17 | E-MEXP-1299 | biostudies-arrayexpress

ZINC-FINGER interactions mediate transcriptional regulation of hypocotyl growth in Arabidopsis

PRJNA449688 | ENA

B-box family proteins BBX18 and BBX23 control thermoresponsive hypocotyl growth in Arabidopsis

PRJNA422618 | ENA

The F-box protein SLOW MOTION regulates hypocotyl growth in Arabidopsis

Here, in a time-course phosphoproteome analysis on Arabidopsis seedlings exposed to control or high ambient temperature, we observed reduced levels of diverse proteins over time, which could be in part due to transcription, translation and/or degradation. In addition, we observed differential phosph...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2025-05-26 | PXD035922 | Pride

Arabidopsis thaliana Proteome Phosphoproteome Temperature

Functions of CsGPA1 on the hypocotyl elongation and root growth of cucumbers.

Not available

S-EPMC6197229 | biostudies-literature

Growth temperature response in Arabidopsis

Moderate increases in the ambient temperature promote hypocotyl growth in Arabidopsis, and this response is totally dependent on the proper activity of the auxin, gibberellin, and brassinosteroid pathways. We have analyzed global the changes in gene expression that occur in Arabidopsis seedlings aft...

ORGANISM(S): Arabidopsis thaliana

2010-05-15 | E-GEOD-13822 | biostudies-arrayexpress

Over-expression of AtEXLA2 alters etiolated arabidopsis hypocotyl growth.

Not available

S-EPMC4284114 | biostudies-literature

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