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MetabolomicsHigh-performance nano-flow liquid chromatography column combined with high- and low-collision energy data-independent acquisition enables targeted and discovery identification of modified ribonucleotides by mass spectrometry (Data-independent acquisition)

Over 170 post-transcriptional RNA modifications have been described and are common in all kingdoms of life. These modifications range from methylation to complex chemical structures, with methylation being the most abundant. RNA modifications play a key role in RNA folding and function and their ...

2023-10-26 | MTBLS2959 | MetaboLights
MetabolomicsLipidIN: a comprehensive repository for flash platform-independent identification and reverse lipidomics

We present expeditious querying, reliable and platform-independent lipid annotation software LipidIN, a comprehensive lipidome atlas with tandem mass spectrometry information, relative retention time and reverse mass spectrometry information. Five-levels spectral fragmentations trees were formula...

2025-03-21 | MTBLS10170 | MetaboLights
MetabolomicsA novel strategy for mining and identification of acylcarnitines using data-independent-acquisition (DIA) based retention time prediction modeling and pseudo-characteristic fragmentation ions matching
It is a challenging work to screen, identify, and quantify acylcarnitines in complex biological samples. A method, based on the retention time (RT) prediction and data-independent acquisition strategies, was proposed for the large-scale identification of acylcarnitines using liquid chromatography co...
2021-10-06 | MTBLS1932 | MetaboLights
MetabolomicsHigh-performance nano-flow liquid chromatography column combined with high- and low-collision energy data-independent acquisition enables targeted and discovery identification of modified ribonucleotides by mass spectrometry (Mixed-mode column chromatography)

Over 170 post-transcriptional RNA modifications have been described and are common in all kingdoms of life. These modifications range from methylation to complex chemical structures, with methylation being the most abundant. RNA modifications play a key role in RNA folding and function and their ...

2023-10-26 | MTBLS2497 | MetaboLights
GenomicsCIARA: a cluster independent algorithm for the identification of rare cell types from single cell RNA seq data
CIARA: a cluster independent algorithm for the identification of rare cell types from single cell RNA seq data
PRJEB52168 | ENA
GenomicsA culture-, amplification-independent, and rapid method for identification of pathogens and antibiotic resistance profile in bovine mastitis milk
A culture-, amplification-independent, and rapid method for identification of pathogens and antibiotic resistance profile in bovine mastitis milk
PRJEB53532 | ENA
GenomicsIdentification of calcineurin-dependent, Crz1-independent gene expression changes in response to chronic KCl stress
Identification of calcineurin-dependent, Crz1-independent gene expression changes in response to chronic KCl stress
PRJNA1071034 | ENA
GenomicsIdentification of calcineurin-dependent, Crz1-independent gene expression changes in response to chronic CaCl2 stress
Identification of calcineurin-dependent, Crz1-independent gene expression changes in response to chronic CaCl2 stress
PRJNA1071031 | ENA
GenomicsConservation-independent identification of novel miRNAs
Motivation: MicroRNAs (miRNAs) are short regulatory RNAs derived from a longer precursor RNA. miRNA biogenesis has been studied in animals and plants, recently elucidating more diverse and complex aspects, such as non-conserved, speciesspecific, and heterogeneous miRNA precursor populations. Small R...
ORGANISM(S): Volvox carteri 
2016-03-02 | GSE58703 | GEO
GenomicsIdentification of Myc-dependent and -independent Notch2 signatures in marginal zone B cells.
Identification of Myc-dependent and -independent Notch2 signatures in marginal zone B cells.
PRJNA1148917 | ENA
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