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Genomicsseq-WA30534819_H3K4me3_N2_MXemb
modENCODE_submission_3169 We analyzed H3 lysine 4 trimethylation levels in the C. elegans genome using chromatin immunoprecipitation followed by Illumina sequencing. We used wild type (N2) mixed developmental stage embryos and performed the experiment in two biological replicates. This series consis...
ORGANISM(S): Caenorhabditis elegans 
2010-09-24 | E-GEOD-24318 | biostudies-arrayexpress
Genomicsseq-SDQ3891_LEM2_N2_MXemb
modENCODE_submission_3168 Although C. elegans was the first multicellular organism with a completely sequenced genome, how this genome is arranged within the nucleus is not known. By chromatin immunoprecipitation of the nuclear transmembrane protein LEM-2, we determined the regions of the C. elegans...
ORGANISM(S): Caenorhabditis elegans 
2010-09-21 | E-GEOD-24241 | biostudies-arrayexpress
GenomicsChromatin Immunoprecipitation of TRA-1 in C. elegans and C. briggsae
The goal of this study is to identify and characterize sites in the C. elegans genome bound by the transcription factor TRA-1. TRA-1 ChIP-seq was performed in the following stages of animals in duplicate: 1) L2 stage of C. elegans wild-type N2 strain; 2) L3 stage of C. elegans wild-type N2 strain; 3...
ORGANISM(S): Caenorhabditis briggsae 
2013-11-04 | E-GEOD-48917 | biostudies-arrayexpress
TranscriptomicsChromatin organization in NPP-13 knockdown C. elegans embryos
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Caenorhabditis elegans 
2016-08-15 | E-GEOD-50488 | biostudies-arrayexpress
TranscriptomicsChromatin organization in NPP-13 knockdown C. elegans embryos [array]
C. elegans nuclear pore protein NPP-13 associates with small RNA genes transcribed by RNA Polymerase III. To test if the nuclear pore-chromatin interactions play a role in large-scale chromatin organization, we determined nuclear membrane-genome interactions and RNA Polymerase II localization in C. ...
ORGANISM(S): Caenorhabditis elegans 
2016-08-15 | E-GEOD-49902 | biostudies-arrayexpress
Genomicsseq-JL00006_ZFP1_N2_L3
modENCODE_submission_6213 This submission comes from a modENCODE project of Jason Lieb. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expressi...
ORGANISM(S): Caenorhabditis elegans 
2013-08-28 | E-GEOD-50301 | biostudies-arrayexpress
Genomicsseq-AB46540_NIgG_N2_Mxemb
modENCODE_submission_6208 This submission comes from a modENCODE project of Jason Lieb. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expressi...
ORGANISM(S): Caenorhabditis elegans 
2013-07-26 | E-GEOD-49213 | biostudies-arrayexpress
Genomicsseq-SDQ3499_DPY30_N2_Mxemb
modENCODE_submission_6232 This submission comes from a modENCODE project of Jason Lieb. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expressi...
ORGANISM(S): Caenorhabditis elegans 
2013-08-28 | E-GEOD-50307 | biostudies-arrayexpress
Genomicsseq-SDQ2357Q2358_AMA1_N2_Mxemb_EE
modENCODE_submission_6227 This submission comes from a modENCODE project of Jason Lieb. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expressi...
ORGANISM(S): Caenorhabditis elegans 
2013-08-28 | E-GEOD-50305 | biostudies-arrayexpress
Genomicsseq-SDQ4585_ASH2_N2_Mxemb
modENCODE_submission_6291 This submission comes from a modENCODE project of Jason Lieb. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expressi...
ORGANISM(S): Caenorhabditis elegans 
2013-08-28 | E-GEOD-50327 | biostudies-arrayexpress
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