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ProteomicsIn planta transcriptome and proteome profiles of Spongospora subterranea illuminates regulatory principles underlying host-pathogen interaction
Spongospora subterranea is an obligate biotrophic pathogen, causing a tremendous economic loss in the potato industry. Currently, there are no effective chemical or biological strategies for the control of S. subterranea. Understanding the gene regulation of pathogens in their host is dependent on m...
ORGANISM(S): Spongospora subterranea 
2022-02-17 | PXD027266 | Pride
Spongospora subterranea  potato  in planta analysis  transcriptomics  proteomics 
ProteomicsIn planta chemical crosslinking and mass spectrometry analysis of protein structure and interaction in Arabidopsis
Mass spectrometry analysis in combination with the site-specific chemical cross-linking has emerged as a powerful method in study of three-dimensional structure of protein complex and in mapping of protein-protein interactions (PPIs). Even though in vitro cross-linking experiments have been widely a...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2016-06-28 | PXD003658 | Pride
Arabidopsis Mass spectrometry Disuccinimidyl suberate In planta chemical cross-linking Interactomics Exhaustive cross-linked peptides identification tool 
UnknownUnderstanding colonization and proliferation potential of endophytes and pathogen in planta via plating, polymerase chain reaction and ergosterol assay.
Not available
S-EPMC5121152 | biostudies-literature
TranscriptomicsTranscription profiling of M.graminicola between growth in vitro and late-stage infection in planta
Comparison of gene expression in M.graminicola between growth in vitro and late-stage infection in planta.
ORGANISM(S): Mycosphaerella graminicola 
2006-02-28 | E-MEXP-523 | biostudies-arrayexpress
UnknownIdentification of isolates of the plant pathogen Leptosphaeria maculans with resistance to the triazole fungicide fluquinconazole using a novel In Planta assay.
Not available
S-EPMC5687775 | biostudies-literature
GenomicsCombining the CowPEAsy web application with in planta agroinfiltration for native promoter validation in Vigna unguiculata
Combining the CowPEAsy web application with in planta agroinfiltration for native promoter validation in Vigna unguiculata
PRJNA1179878 | ENA
UnknownIdentification of Epichloe endophytes in planta by a microsatellite-based PCR fingerprinting assay with automated analysis.
Not available
S-EPMC91174 | biostudies-literature
TranscriptomicsExpression analysis of Ralstonia solanacearum strain GMI1000 at 20°C and 28°C in rich medium (CPG) and in planta
Investigation of whole genome gene expression level changes in the bacterial wilt pathogen Ralstonia solanacearum, strain GMI1000 at 20°C and 28°C in culture and in planta. The tropical strain GMI1000 cannot wilt tomato plants at 20°C although it can cause full-blown disease at 28°C. A 16 array stu...
ORGANISM(S): Ralstonia solanacearum GMI1000 
2012-01-15 | E-GEOD-33657 | biostudies-arrayexpress
TranscriptomicsExpression analysis of Ralstonia solanacearum strain UW551 at 20°C and 28°C in rich medium (CPG) and in planta
Investigation of whole genome gene expression level changes in the bacterial wilt pathogen Ralstonia solanacearum, strain UW551 at 20°C and 28°C in culture and in planta. The temperatel strain UW551 can wilt and cause full-blown disease on tomato plants at 28°C as well as at 20°C. A 16 array study ...
ORGANISM(S): Ralstonia solanacearum UW551 
2012-01-15 | E-GEOD-33661 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Pectobacterium atrosepticum wild and ExpI mutants to determine the quorum sensing regulon
Genome-wide in planta determination of the quorum sensing regulon in Pectobacterium atrosepticum, through gene expression analysis of ExpI mutants using Agilent custom microarrays.
ORGANISM(S): Pectobacterium atrosepticum 
2008-07-01 | E-TABM-384 | biostudies-arrayexpress
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