Interactomics - OmicsDI

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Organisms

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Repository

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Technology Type

Mass Spectrometry (156)
Affinity purification coupled with mass spectrometry proteomics (75)
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Instrument Platform

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CHEBI ID

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Metabolite Name

Uridine 5-diphosphate (1)
Propionyl coenzyme A (1)
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Orotidine 5-monophosphate (1)
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2,3-Diphospho-D-glyceric acid (1)
2-(Hydroxymethyl)butanoic acid (1)
Uridine 5-diphosphoglucose (1)
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N-Hexanoyl-glycine (1)
Ne-Acetyl-lysine (1)

First Public Date

2026 (12)
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2020 (1)
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Classification

bacteria (3)

Modification

2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)
4-tetrahydrothiazine-3-carboxylic acid (1)

Release Date

2023 (48)
2022 (43)
2025 (42)
2021 (42)
2024 (39)
2020 (29)
2016 (20)
2015 (19)
2019 (17)
2017 (16)
2018 (15)
2012 (11)
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2013 (10)
2026 (7)
2010 (3)
2009 (2)

Lab affiliation

Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (5)
EDyP (4)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (4)
Department of Pediatrics, University of Groningen, University Medical Center Groningen (UMCG), 9713 AV Groningen, The Netherlands (3)
Univ. Lille, Inserm, CHU Lille, U1192 - Protéomique Réponse Inflammatoire Spectrométrie de Masse - PRISM, F-59000 Lille, France (3)
Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium (3)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, 8093 Zurich, Switzerland Faculty of Science, University of Zurich, 8006 Zurich, Switzerland (2)
1. Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, 8093 Zurich, Switzerland 2. Faculty of Science, University of Zurich, 8006 Zurich, Switzerland (2)
Departments of Chemistry, Biological Sciences, Pathology, Microbiology and Immunology, Vanderbilt University (2)
IMB, Ackermannweg 4, 55128 Mainz (2)
Lab Head (2)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (2)
Chemistry Department, Columbia University in the City of New York (2)
Department of Genome Sciences, University of Washington (2)
Institut Jacques Monod, UMR7592 CNRS-Université Paris Diderot, Sorbonne Paris Cité, F-75205 Paris, France (1)
Institut du Fer a Moulin, Inserm-Sorbonne Université UMR-S 1270, Paris, France (1)
Institute of Biochemistry and Biophysics, Polish Academy of Sciences, ul. Pawińskiego 5A, 02–106 Warsaw, Poland (1)
Department of Cellular and Molecular Medicine, KU Leuven, Belgium (1)
Center for Molecular Medicine, University Medical Center Utrecht, Utrecht University, 3C584 CG Utrecht, The Netherlands (1)
LIFE Science, HKUST (1)
Lab of proteoforms' interactomics, Institute of Biomedical Chemistry, Moscow, Russia (lab head) (1)
Universidade Católica Portuguesa, Faculty of Dental Medicine (FMD), Center for Interdisciplinary Research in Health (CIIS) Portugal (1)
Departments of Biology and Chemistry, Vanderbilt University, USA (1)
CNRS, IBMC, FRC1589, Proteomics Core Facility (1)
1. SaBio, Instituto de Investigación en Recursos Cinegéticos IREC-CSIC-UCLM-JCCM, Ronda de Toledo s/n, 13005, Ciudad Real, Spain. 2. Biochemistry Section, Faculty of Science and Chemical Technologies, and Regional Centre for Biomedical Research (CRIB), University of Castilla-La Mancha, 13071, Ciudad Real, Spain. (1)
1 VIB-UGent Center for Medical Biotechnology, B9052 Ghent, Belgium; 2 Department of Biomolecular Medicine, Ghent University, B9052 Ghent, Belgium. (1)
Laboratory of Animal Histology, Faculty of Biology, “Alexandru Ioan Cuza” University of Iasi, Carol I Bvd. No. 22, Iasi 700505, Romania (1)
Institut de Pharmacologie et Biologie Structurale-CNRS (1)
BPMP, CNRS, INRAE, Institut Agro, Univ Montpellier, 34060 Montpellier, France (1)
Univ. Lille, Inserm, U-1192 - Laboratoire Protéomique, Réponse Inflammatoire et Spectrométrie de Masse-PRISM, F-59000, Lille, France (1)

Publication date

2024 (34)
2026 (30)
2023 (28)
2025 (26)
2022 (20)
2021 (12)
2020 (10)
2019 (10)
2018 (6)
2015 (6)
2017 (5)
2016 (4)
2014 (1)
2013 (1)

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Protein-metabolite interactomics of carbohydrate metabolism reveal regulation of lactate dehydrogenase

Metabolic networks are interconnected and influence diverse cellular processes. The protein-metabolite interactions that mediate these networks are frequently low affinity and challenging to systematically discover. We developed mass spectrometry integrated with equilibrium dialysis for the disco...

2023-08-07 | MTBLS7237 | MetaboLights

Development of in planta chemical cross-linking-based quantitative interactomics in Arabidopsis

An in planta chemical cross-linking-based quantitative interactomics (IPQCX-MS) workflow has been developed to investigate in vivo protein-protein interactions and alteration in protein structures in a model organism, Arabidopsis thaliana. A chemical cross-linker, azide-tag-modified disuccinimidyl p...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2018-08-14 | PXD008161 | Pride

Single-Cell and Spatially Resolved Interactomics of Tooth-Associated Keratinocytes in Periodontitis

PRJNA1108695 | ENA

LC-MS/MS interactomics analysis of Praf2 with timsTOF Pro

LC-MS/MS interactomics analysis of Praf2 using TurboID with timsTOF Pro.

ORGANISM(S): Homo sapiens (Human)

2023-12-20 | PXD029019 | Pride

Turboid Interactomics Praf2 Timstof pro Lc-ms/ms

Tensin 2 interactomics reveals interaction with GAPDH and a phosphorylation-mediated regulatory role in glycolysis

PRJNA967673 | ENA

MiniTurbo-based interactomics of two plasma membrane-localized SNARE proteins in Marchantia polymorpha

• Marchantia polymorpha is a model liverwort and its overall low genetic redundancy is advantageous for dissecting complex pathways. Proximity-dependent in vivo biotin-labelling methods have emerged as powerful interactomics tools in recent years. However, interactomics studies applying proximity la...

ORGANISM(S): Marchantia polymorpha

2022-04-01 | PXD030429 | Pride

Snare protein Interactomics Membrane-trafficking Miniturbo Proximity labelling Marchantia polymorpha

Intra-organ cell specific mitochondrial quantitative interactomics.

Not available

S-EPMC11195139 | biostudies-literature

Integrative interactomics applied to bovine fescue toxicosis.

Not available

S-EPMC8941056 | biostudies-literature

Dissection of protein interactomics highlights microRNA synergy.

Not available

S-EPMC3653946 | biostudies-literature

Single-cell and spatially resolved interactomics of tooth-associated keratinocytes in periodontitis.

Not available

S-EPMC11178863 | biostudies-literature

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