Inclusion bodies

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Mass Spectrometry (34)
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Instrument Platform

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Illumina NovaSeq 6000 (2)
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UNIPROT ID/AC

P42858 (1)
P28562 (1)
P45983 (1)
Q00613 (1)
Q9UNE7 (1)
Q16539 (1)
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CHEBI ID

CHEBI:15354 (4)
CHEBI:36006 (3)
CHEBI:18237 (3)
CHEBI:16811 (3)
CHEBI:28044 (3)
CHEBI:17750 (3)
CHEBI:29016 (3)
CHEBI:26523 (2)
CHEBI:15422 (2)
CHEBI:16761 (2)
CHEBI:16457 (2)
CHEBI:77267 (2)
CHEBI:49033 (2)
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CHEBI:17126 (2)
CHEBI:30751 (2)
CHEBI:18186 (2)
CHEBI:16997 (2)
CHEBI:17790 (2)
CHEBI:15347 (2)
CHEBI:18257 (2)
CHEBI:17824 (2)
CHEBI:7676 (2)
CHEBI:25017 (2)
CHEBI:30794 (2)
CHEBI:15428 (2)
CHEBI:16610 (2)
CHEBI:1148 (2)
CHEBI:36080 (1)
CHEBI:16027 (1)

Metabolite Name

Dimethylsulfoniopropionate (2)
Methionine sulfoxide (2)
Butyrylcarnitine (2)
Glutamate (2)
2,3-Dihydroxypropane-1-sulfonate (2)
Taurine (2)
Arginine (2)
Methionine (2)
Choline (2)
Spermidine (2)
Betaine (2)
Choline (2)
Phenylalanine (2)
Acetyl carnitine (1)
S-Adenosyl homocysteine (1)
N(6)-Methyladenosine (1)
CerP(d15:0/12:0) (1)
CerP(d15:0/10:0) (1)
PEp 38:4-A (1)
PE 40:6-B (1)
PE 38:6-A (1)
PG 38:5 (1)
PS 34:0 (1)
PS 40:2 (1)
PS 40:7 (1)
PEp 34:1 (1)
PEp 34:2 (1)
PEp 36:4 (1)
PEp 40:4 (1)
PEp 38:5-A (1)

First Public Date

2026 (9)
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2016 (1)

Modelling Approach

Ordinary differential equation model (3)

Lab affiliation

Medizinisches Proteom-Center, Medical Faculty, Ruhr-University Bochum, Bochum, Germany (3)
Department of Pharmacology, University of Virginia School of Medicine, Charlottesville, Virginia 22908, USA (1)
Discovery Proteomics Facility Target Discovery Institute University of Oxford (1)
Group “Retinal degeneration and regeneration” Department of Ophthalmology University of Lausanne Hôpital Ophtalmique Jules-Gonin Fundamental research center 15 av. de France 1004 Lausanne Switzerland (1)
Histone Modifications Group Zentrallabor für Proteinanalytik BioMedical Center Faculty of Medicine Ludwig-Maximilians-University of Munich Großhadernerstr. 9 82152 Planegg-Martinsried (1)
Institute of Translational Medicine, Zhejiang Key Laboratory of Frontier Medical Research on Cancer Metabolism, School of Medicine, Zhejiang University, Zhejiang, China. (1)
KIIT Deemed to be University (1)
Kelly: Diabetes and Obesity Research Center, Sanford-Burnham Medical Research Institute, Orlando, Florida, USA. Coon: Department of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA Department of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA Genome Center, University of Wisconsin-Madison, Madison, WI 53706, USA (1)
Leibniz Institute for Experimental Virology (HPI), Germany; Centre for Structural Systems Biology, Germany; 5European XFEL GmbH, Germany. (1)
MPIs for Biophysics and Brain Research (1)
Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany Department of Proteomics and Signal Transduction (1)
NHMRC Senior Research Fellow Department of Biochemistry and Molecular Biology | Faculty of Medicine, Dentistry and Health Sciences Level 2 South, Bio21 Molecular Science and Biotechnology Institute, 30 Flemington Road The University of Melbourne, Victoria 3010 Australia (1)
NHMRC Senior Research Fellow Department of Biochemistry and Molecular Biology | Faculty of Medicine, Dentistry and Health Sciences Level 2 South, Bio21 Molecular Science and Biotechnology Institute, 30 Flemington Road The University of Melbourne, Victoria 3010 Australia T: +61 3 8344 2530 | E: dhatters@unimelb.edu.au (1)
National Key Laboratory of Veterinary Public Health and Safety, College of Veterinary Medicine, China Agricultural University, Beijing, 100094, PR China. (1)
National Key Laboratory of Veterinary Public Health and Safety, College of Veterinary Medicine, China Agricultural University, Beijing, 100094, (1)
National Key Laboratory of Veterinary Public Health and Safety, College of Veterinary Medicine, China Agricultural University, Beijing, 100094National Key Laboratory of Veterinary Public Health and Safety, College of Veterinary Medicine, China AgriculturNational Key Laboratory of Veterinary Public Health and Safety, College of Veterinary Medicine, China Agricultural University, Beijing, 100094,al University, Beijing, 100094, (1)
Plasma Proteins, Sanquin Research and Landsteiner Laboratory, Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands (1)
Principal Scientist, CSIR- Centre for Cellular and Molecular Biology, Hyderabad, India (1)
Professor Cellular Imaging, Huntington degradation research groupleader Department of Medical Biology, Amsterdam UMC (AMC), Meibergdreef 15, 1105AZ Amsterdam, the Netherlands (1)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Associate Editor, ACS Chemical Biology (1)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (1)
SYBIOMA KULeuven Herestraat 49 3000 Leuven (1)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (1)
Switch Laboratory (VIB-KU Leuven Center for Brain & Disease Research)-Department of Cellular and Molecular Medicine (1)
Switch Laboratory VIB‐KU Leuven Center for Brain & Disease Research Department of Cellular and Molecular Medicine (1)
Syracuse University Center for Reproductive Evolution (1)
Technical University of Munich TUM School of Life Scienes Weihenstephan Freising, Germany (1)
The Pirbright Institute, Woking, Surrey, GU24 0NF, UK (1)
The Third Affiliated Hospital of Shenzhen University (1)
Tumor Biology Research Program, Research department, Children's Cancer Hospital in Egypt 57357 (1)

IsPrivate

False (3)

Classification

viruses (5)
bacteria (3)

Modification

2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)

Study type

Transcription profiling by array (54)
RNA-seq of coding RNA (28)
RNA-seq of non coding RNA (3)
Comparative genomic hybridization by array (2)
Other (2)
ChIP-seq (2)
RNA-seq of coding RNA from single cells (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by SAGE (1)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
High-throughput sequencing (1)
Methylation profiling by array (1)

Release Date

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2015 (71)
2017 (67)
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2014 (60)
2013 (56)
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2011 (44)
2010 (39)
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2005 (17)
2007 (15)
2006 (14)
2026 (14)
2004 (9)
2003 (9)
2002 (7)
1999 (6)
2001 (5)
2000 (4)
1998 (1)
1992 (1)

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Heat and pressure resistance relates to protein folding and aggregation

The locus of heat resistance (LHR) confers extreme heat resistance in E. coli. This study explored the role of the LHR in pressure resistance of E. coli, as well as its relationship with protein folding and aggregation in vivo. The role of LHR was investigated in E. coli MG1655 expressing a ibpA-yfp...

ORGANISM(S): Escherichia coli

2020-01-27 | PXD011023 | Pride

CTCF promotes RNA pol II pausing and links DNA methylation to alternative splicing [RNA-Seq]

The goal of this study was to investigate the role of intragenic CTCF in alternative pre-mRNA splicing through a combined CTCF-ChIP-seq and RNA-seq approach. CTCF depletion led to decreased inclusion of weak upstream exons. CTCF ChIP-seq was performed in BJAB and BL41 B cell lines and normalized rel...

ORGANISM(S): Homo sapiens

2011-10-06 | E-GEOD-31486 | biostudies-arrayexpress

Structural and molecular properties of inclusion bodies of mumps virus

PRJNA1114030 | ENA

Inclusion bodies are a site of ebolavirus replication.

Not available

S-EPMC3486333 | biostudies-literature

Structure-Function Relationship of Inclusion Bodies of a Multimeric Protein.

Not available

S-EPMC7225587 | biostudies-literature

Bacterial inclusion bodies contain amyloid-like structure.

Not available

S-EPMC2494559 | biostudies-literature

Inclusion bodies formed by polyglutamine and poly(glycine-alanine) are enriched with distinct proteomes but converge in proteins that are risk factors for disease and involved in protein degradation

Poly(glycine-alanine) (polyGA) is one of the dipolypeptides expressed in Motor Neuron Disease caused by C9ORF72 mutations and accumulates as inclusion bodies in the brain of patients. Superficially these inclusions are similar to those formed by polyglutamine (polyQ) in Huntington’s disease and both...

ORGANISM(S): Mus musculus (Mouse)

2020-08-18 | PXD018824 | Pride

Huntington Aggregates C9prf72 Polyga

Inclusion bodies formed by polyglutamine and poly(glycine-alanine) are enriched with distinct proteomes but converge in proteins that are risk factors for disease and involved in protein degradation

ORGANISM(S): Mus musculus (Mouse)

2020-08-18 | PXD018505 | Pride

Huntington C9orf72 Chaperones Proteosome Inclusions

Magnetization of active inclusion bodies: comparison with centrifugation in repetitive biotransformations.

Not available

S-EPMC6122667 | biostudies-literature

Luminescent conjugated oligothiophenes for sensitive fluorescent assignment of protein inclusion bodies.

Not available

S-EPMC3743175 | biostudies-literature

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