Infectious diseases

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Unknown (146209)
Transcriptomics (5956)
Genomics (3681)
Proteomics (504)
Metabolomics (182)
Genomic (35)
Models (29)
Other (17)
Methylation profiling (9)
Clinical (7)
Multiomics (3)

Organisms

Homo sapiens (2296)
Mus musculus (1510)
Arabidopsis thaliana (192)
Gallus gallus (105)
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Sus scrofa (83)
Rattus norvegicus (78)
Macaca mulatta (60)
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Mycobacterium tuberculosis (54)
Drosophila melanogaster (51)
Oryza sativa (36)
Caenorhabditis elegans (36)
Staphylococcus aureus (35)
Plasmodium falciparum (33)
Ovis aries (32)
Candida albicans (32)
Triticum aestivum (32)
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Pseudomonas aeruginosa (28)
Escherichia coli (28)
Schistosoma mansoni (25)
Helicobacter pylori (23)
Vitis vinifera (23)
Solanum lycopersicum (23)
Bordetella pertussis (5)
Clostridioides difficile (3)
Severe acute respiratory syndrome coronavirus 2 (3)
Lutzia (1)

Organisms

Homo sapiens (475)
Mus musculus (318)
Staphylococcus aureus (61)
Escherichia coli (57)
Leishmania tropica (31)
Leishmania major (29)
Klebsiella pneumoniae (29)
Streptococcus pneumoniae (24)
Vibrio cholerae (22)
Bacteria (21)
Mycobacterium tuberculosis (20)
Pseudomonas aeruginosa (17)
Severe acute respiratory syndrome coronavirus 2 (15)
human metagenome (15)
human gut metagenome (13)
Acinetobacter baumannii (12)
Bos taurus (12)
Aedes aegypti (11)
Macaca mulatta (11)
Zaire ebolavirus (11)
Enterobacteriaceae (11)
Streptococcus pyogenes (11)
Neisseria meningitidis (10)
Amblyomma maculatum (9)
Entamoeba histolytica (9)
Streptococcus agalactiae (9)
Bacillus anthracis (8)
Helicobacter pylori (8)
human oral metagenome (8)
Rattus norvegicus (8)

Repository

biostudies-arrayexpress (5901)
ENA (3351)
geo (315)
pride (299)
MetaboLights (180)
EGA (122)
MassIVE (101)
iProX (58)
dbGaP (35)
BioModels (28)
jPOST (23)
EVA (7)
GNPS (2)
GPMDB (2)
PAXDB (2)
Cell Collective (1)

Tissue

Cell culture (66)
Epithelial cell (22)
Blood plasma (16)
Macrophage (15)
Blood (12)
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Lung (10)
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Blood cell (8)
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Urine (3)
Astrocyte (2)

Disease

Normal (31)
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Bacterial infectious disease (4)
Alzheimer's disease (3)
Botulism (2)
Pertussis (2)
HHV-6B infected (2)
Infected (2)
Not infected (2)
Reference (2)
Osteosarcoma (2)
Prostate cancer (2)
Adenocarcinoma (2)
Huntington's disease (1)
Peptic ulcer disease (1)
Duodenal ulcer (1)
Parkinson's disease (1)
Mock infection (1)
XCGD (1)
FRD1234 (1)
Aviremic HIV (1)
Yersinia enterocolitica uninfected (1)
Cytomegalovirus seropositive (1)
Respiratory syncytial virus infection (1)
Yersinia enterocolitica WAP infected (virulent) (1)
HIV-1 and Neisseria gonorrhoeae infected (1)
Nurr1 lentivirus (1)
HIV-1 seropositive (1)
HIV-associated dementia (1)
Acute HIV-1 infection (1)

Technology Type

Mass Spectrometry (299)
Shotgun proteomics (154)
Mass spectrometry (130)
Bottom-up proteomics (59)
Mass spectrometry assay (37)
Data-dependent acquisition (37)
Affinity purification coupled with mass spectrometry proteomics (28)
Gel-based experiment (25)
Data-independent acquisition (18)
NMR spectroscopy (13)
Top-down proteomics (13)
SWATH MS (12)
ILLUMINA, Illumina HiSeq 2000 (3)
Illumina HiSeq 2000 (3)
All-ion fragmentation (3)
Illumina HiSeq 2500 (2)
RNA mass spectrometry (2)
SRM/MRM (2)
HiSeq X Ten (ILLUMINA) (1)
Human Cardio Metabochip (1)
Infinium Omni2.5M (1)
Illumina MiSeq, ILLUMINA (1)
Illumina HumanCoreExome-12v1-0, Illumina HumanCoreExome-12v1-1, Illumina HumanCoreExome-24v1-0 (1)
Illumina Omni 2.5, Illiumina Omni 2.5 (1)
Illumina HiSeq 2000, Illumina Genome Analyzer IIx (1)
Illumina HumanHap 550K, Illumina HumanHap300-Duo (1)
NMR spectroscopy assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Glycoproteomics (1)
Immunopeptidomics (1)

Instrument Platform

Illumina NovaSeq 6000 (109)
NextSeq 500 (108)
Illumina HiSeq 2000 (98)
Illumina HiSeq 2500 (87)
Illumina HiSeq 4000 (41)
Illumina MiSeq (31)
Illumina HiSeq 1500 (22)
Illumina Genome Analyzer II (21)
Illumina Genome Analyzer IIx (19)
NextSeq 550 (18)
Illumina HiSeq 3000 (15)
Scanning hardware (12)
NextSeq 2000 (11)
GenePix 4000B [Axon Instruments] (8)
BGISEQ-500 (8)
Axon- GenePix4000B (7)
418 [Affymetrix] (5)
Illumina NovaSeq X (5)
None (5)
DNBSEQ-T7 (5)
Illumina HiScanSQ (4)
Generation III Array Scanner [Amersham] (4)
HiSeq X Ten (4)
Maxwell 16 Instrument (3)
Agilent 2100 Bioanalyzer (3)
ScanArray 5000 [PerkinElmer] (3)
GenePix Professional 4200A [Axon Instruments] (3)
G2565AA DNA microarray scanner [Agilent] (3)
Spectronic Helios Alpha UV-Vis spectrophotometer (3)
Bioanalyser (3)

Publication Date

2013 (780)
2014 (694)
2012 (689)
2010 (687)
2015 (660)
2011 (509)
2016 (361)
2008 (341)
2009 (276)
2022 (219)
2025 (214)
2021 (198)
2023 (164)
2020 (161)
2007 (160)
2024 (142)
2026 (128)
2019 (121)
2018 (114)
2005 (100)
2017 (100)
2006 (63)
2004 (22)
2003 (5)
2002 (1)
2001 (1)

UNIPROT ID/AC

Q9EQ21 (5)
Q921I1 (5)
P28700 (1)
P70284 (1)
Q64729 (1)
Q9WVS0 (1)
Q04683 (1)
Q9ES17 (1)
P18893 (1)
P07750 (1)
P04351 (1)
P42232 (1)
Q60636 (1)
P41183 (1)
P06332 (1)
P04003 (1)
Q15485 (1)
O00187 (1)
P01024 (1)
P06681 (1)
P0C0L4 (1)
P0C0L5 (1)
P02741 (1)
Q99JB6 (1)
P42227 (1)
P08505 (1)
B7P0J2_IXOSC (1)
B7P0K8_IXOSC (1)
B7P0K9_IXOSC (1)
B7P0L7_IXOSC (1)

CHEBI ID

CHEBI:30769 (38)
CHEBI:15428 (36)
CHEBI:16737 (30)
CHEBI:15741 (28)
CHEBI:17368 (28)
CHEBI:28044 (27)
CHEBI:32816 (27)
CHEBI:27897 (27)
CHEBI:17295 (27)
CHEBI:16919 (26)
CHEBI:15354 (26)
CHEBI:17895 (26)
CHEBI:15756 (26)
CHEBI:25094 (25)
CHEBI:18186 (25)
CHEBI:18257 (25)
CHEBI:27266 (25)
CHEBI:16704 (25)
CHEBI:18237 (24)
CHEBI:17568 (24)
CHEBI:18050 (24)
CHEBI:16857 (24)
CHEBI:18132 (16)
CHEBI:24875 (5)
CHEBI:29034 (5)
CHEBI:74236 (1)
CHEBI:60425 (1)
CHEBI:60027 (1)
CHEBI:506227 (1)
CHEBI:23888 (1)

Metabolite Name

L-Tyrosine (25)
Citric acid (22)
L-Phenylalanine (22)
Hypoxanthine (22)
Ornithine (21)
Glycine (19)
Uric acid (19)
L-Threonine (18)
Uridine (18)
Inosine (18)
Taurine (17)
L-Glutamine (17)
L-Serine (17)
Xanthine (17)
Creatine (17)
Creatinine (16)
L-Valine (16)
Uracil (15)
Valine (15)
Adenosine (15)
Palmitic acid (15)
L-Tryptophan (15)
Guanosine (15)
L-Isoleucine (15)
L-Leucine (15)
L-Proline (14)
Stearic acid (14)
Adenine (14)
L-Alanine (13)
Glycine (13)

First Public Date

2025 (377)
2024 (358)
2013 (322)
2014 (315)
2023 (287)
2022 (264)
2026 (246)
2021 (243)
2020 (221)
2018 (221)
2019 (203)
2017 (124)
2015 (88)
2016 (81)
2010 (1)

Modelling Approach

Ordinary differential equation model (18)
Constraint-based model (5)
Differential equation model (3)
Population model (1)

Study status

Completed (3)
Enrolling by invitation (2)
Recruiting (2)

Lab affiliation

Department of Chemical & Systems Biology, Stanford University (6)
The Key Laboratory of Molecular Biology of Infectious Diseases designated by the Chinese Ministry of Education, Chongqing Medical University, Chongqing, China. (5)
Department of Infectious Diseases, Key Laboratory of Molecular Biology for Infectious Diseases (Ministry of Education), Institute for Viral Hepatitis, The Second Affiliated Hospital, Chongqing Medical University, Chongqing, China. (4)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute for Biomedical Research (2)
Centre for Innate Immunity and Infectious diseases, Hudson Institute of Medical Research, Clayton 3168, Australia (2)
Department of Biochemistry and Molecular Biology, Oklahoma Center for Respiratory and Infectious Diseases, Oklahoma State University, Stillwater, Oklahoma, USA (2)
Department of Clinical Laboratory, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, China. The Key Laboratory of Molecular Biology of Infectious Diseases designated by the Chinese Ministry of Education, Chongqing Medical University, Chongqing, China. (2)
Department of Infectious Diseases, Molecular Virology, Heidelberg University, Im Neuenheimer Feld 344, Heidelberg, Germany (2)
Department:Intergrated biomedical sciences,Division:Chemical biology,Institute of infectious diseases and Molecular medicine(IDM),Faculty of health science, University of Cape Town, South Africa (2)
Division of Infectious Diseases and International Medicine Department of Internal Medicine Morsani College of Medicine University of South Florida (2)
Division of clinical sciences (IKVL), Department for infectious diseases, BMC D13, Lund University (2)
Faculty of Chemistry and Center for Synthetic Microbiology (SYNMIKRO) Head of the Core-Facility for Mass Spectrometry Marburg University Hans-Meerwein-Str. 4 35032 Marburg GERMANY (2)
Functional Genomics, University Medicine Greifswald, Germany (2)
Infectious Diseases and Immunity in Global Health Program, Research Institute of the McGill University Health Centre, Montreal, Quebec, Canada (2)
Institute for Infectious Diseases, University of Bern, Switzerland (2)
Institute of Clinical Sciences, Department of Oncology, Lund University, Sweden (2)
Integrative Parasitology, Centre for Infectious Diseases, University Hospital Heidelberg, Heidelberg University Medical Faculty; Heidelberg, Germany (2)
J. Craig Venter Institute, Rockville, MD 20850 (2)
Laboratory of Immunogenetics, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rockville, MD, USA (2)
Section of Paediatric Infectious Diseases, Faculty of Medicine, Imperial College London, UK (2)
-Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht -Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, Utrecht 3584 CH, Netherlands. -Netherlands Proteomics Center, Padualaan 8, Utrecht 3584 CH, Netherlands. (1)
-Centre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research, Clayton, Victoria, Australia -Department of Molecular and Translational Science, Monash University, Clayton, Victoria, Australia (1)
1 Department of Immunology, Interfaculty Institute for Cell Biology, Tübingen, Germany 2 German Cancer Consortium (DKTK), DKFZ Partner Site Tübingen, Tübingen, Germany (1)
1. Centre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research, Clayton, Victoria, Australia. 2. Department of Molecular and Translational Science, Monash University, Clayton, Victoria, Australia. (1)
1. Institute of Comparative Medicine, College of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China 2. Co-Innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, Yangzhou University, Yangzhou 225009, China (1)
1. Tuberculosis Research Program Centenary Institute, The University of Sydney, Camperdown, NSW 2050, Australia 2. The University of Sydney, Discipline of Infectious Diseases & Immunology and Sydney Institute for Infectious Diseases, Camperdown, NSW 2050, Australia (1)
1.Division of Infectious Diseases, Brigham and Women's Hospital, Boston, MA, USA 2.Department of Microbiology, Harvard Medical School, Boston, MA, USA 3.Howard Hughes Medical Institute, Boston, MA, USA (1)
1.Precision Vaccines Program, Division of Infectious Diseases, Boston Children’s Hospital, Boston, MA, USA. 2. Department of Pediatrics, Harvard Medical School, Boston, MA, USA. (1)
1.School of Life and Environmental Sciences, Faculty of Science, Engineering and Built Environment, Deakin University, Geelong 3216, Australia 2.Centre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research, 3168 Melbourne, Australia 3.Department of Molecular and Translational Science, Monash University, 3168 Melbourne, Australia (1)
1Department of Pathology, Dana-Farber/Harvard Cancer Center, PhD Program in Immunology, Harvard Medical School; Department of Laboratory Medicine, Boston Children's Hospital, Enders Research Building, Room 811, Boston, MA, 02115, USA (1)

Keyword

Anti-Tumor Necrosis Factor (1)
Volatile Organic Compounds (1)
Nano-sensors (1)
Electronic nose (1)
Digestive cancers (1)
Diabete Mellitus (1)
Sickle Cell Disease (1)
Sjogren’s Syndrome (1)
Infectious (1)
TREM-1 (1)
Marker (1)
Neutrophil CD64 (1)
Monocyte Human Leukocyte Antigen - DR (1)
Postoperative Infectious Complications (1)
C-reactive protein (CRP) (1)
Procalcitonin (PCT) (1)
Inflammatory bowel disease (1)
Biomarkers (1)
Infection (1)
Colorectal (1)

IsPrivate

False (28)

Model Flag

Non Kinetic (2)
Non Miriam (1)

Submitter Keywords

Manuscript Accepted (1)
Not Peer Reviewed (1)
COVID-19 (1)

Classification

bacteria (756)
viruses (94)
protozoa (90)
fungi (24)
helminths (9)

Modification

2x(15)N labeled L-lysine (1)
4 (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (4123)
RNA-seq of coding RNA (742)
Unknown experiment type (136)
RNA-seq of non coding RNA (123)
ChIP-seq (115)
Comparative genomic hybridization by array (81)
Other (75)
RNA-seq of coding RNA from single cells (70)
Methylation profiling by array (41)
DNA-seq (37)
RNA-seq of total RNA (35)
Transcription profiling by RT-PCR (29)
ChIP-chip by tiling array (26)
Transcription profiling by tiling array (25)
Animal - High-throughput sequencing (19)
Proteomic profiling by array (19)
Cell line - High-throughput sequencing (18)
Methylation profiling by high throughput sequencing (17)
Transcription profiling by SAGE (15)
MicroRNA profiling by array (14)
Human - High-throughput sequencing (11)
ChIP-chip by array (11)
High-throughput sequencing (10)
Human - One-color microarray (10)
Genotyping by array (10)
Plant - High-throughput sequencing (8)
MicroRNA profiling by high throughput sequencing (8)
Ribo-seq (8)
One-color microarray (6)
Cell line - One-color microarray (6)

Release Date

2022 (17812)
2021 (17015)
2023 (14926)
2025 (14136)
2024 (12948)
2020 (12784)
2019 (9195)
2018 (8267)
2017 (7062)
2016 (6641)
2015 (5861)
2014 (5079)
2013 (3578)
2012 (2999)
2011 (2539)
2010 (2327)
2026 (1795)
2009 (1514)
2008 (1388)
2007 (959)
2006 (732)
2005 (686)
2004 (466)
2003 (360)
2002 (279)
2001 (222)
2000 (220)
1999 (159)
1998 (141)
1997 (13)

Location

United States (3)
Latvia (1)
Russia (1)
Poland (1)
Netherlands (1)

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Lipidomics analysis of oviducts from infectious bronchitis virus-infected chicks

Avian infectious bronchitis virus (IBV), a highly pathogenic gammacoronavirus , causes severe respiratory and urogenital system disease in chickens, resulting in huge economic losses in global poultry production. This study employs lipidomics analysis to comp...

2025-10-15 | MTBLS12744 | MetaboLights

Metabolomics analysis of oviducts from infectious bronchitis virus-infected chicks

2025-10-15 | MTBLS12740 | MetaboLights

Alignment of multiple metabolomics LC-MS datasets from disparate diseases to reveal fever-associated metabolites

Acute febrile illnesses are still a major cause of mortality and morbidity globally, particularly in low to middle income countries. The aim of this study was to determine any possible metabolic commonalities of patients infected with disparate pathogens that cause fever. Three liquid chromatogra...

2023-07-17 | MTBLS4895 | MetaboLights

Fragment ends of circulating microbial DNA as signatures for infectious diseases

EGAS00001006321 | EGA

Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Tuberculosis (TB), caused by infection with Mycobacterium tuberculosis (M. tuberculosis), is a major cause of morbidity and mortality worldwide and efforts to control TB are hampered by difficulties with diagnosis, prevention and treatment. Most people infected with M. tuberculosis remain asymptomat...

ORGANISM(S): Homo sapiens

2010-08-11 | E-GEOD-22098 | biostudies-arrayexpress

Clinical practice guideline for the diagnosis and management of group A streptococcal pharyngitis: 2012 update by the Infectious Diseases Society of America.

Not available

S-EPMC7108032 | biostudies-literature

Infectious Bursal Disease Virus (IBDV) Infection

Infectious bursal disease virus (IBDV) is a highly contagious dsRNA virus (Birnaviridae) which causes immuno-suppression in chickens. Although largely controlled by vaccination, new, virulent strains of the virus mean that infectious bursal disease (IBD or ëGumboroí disease) still remains a threat t...

ORGANISM(S): Gallus gallus

2014-12-30 | E-TABM-1129 | biostudies-arrayexpress

Peering Through the Glass Ceiling: A Mixed Methods Study of Faculty Perceptions of Gender Barriers to Academic Advancement in Infectious Diseases.

Not available

S-EPMC7489472 | biostudies-literature

Current Practice Patterns and Educational Needs of Immunocompromised Infectious Diseases Physicians in Australia and New Zealand.

Not available

S-EPMC12416442 | biostudies-literature

Development of gene expression signatures for chicken LMH cells infected with infectious laryngotracheitis virus (ILTV)

To explore the molecular events in LMH cells upon infectious laryngotracheitis virus (ILTV) infection, transcriptional profiling of LMH cells infected with ILTV was compared with uninfected control cells. Gene expression in LMH cells with or without virus infection was measured at two day post infec...

ORGANISM(S): Gallus gallus

2015-10-24 | E-GEOD-70855 | biostudies-arrayexpress