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Unknown
(633928)
Genomics
(59118)
Transcriptomics
(41833)
Proteomics
(12512)
Other
(1640)
Models
(1509)
Metabolomics
(1392)
Clinical
(1310)
Methylation profiling
(782)
Genomic
(215)
Multiomics
(102)
Organisms
Homo sapiens
(21918)
Mus musculus
(14574)
Arabidopsis thaliana
(2190)
Drosophila melanogaster
(2083)
Rattus norvegicus
(1503)
Saccharomyces cerevisiae
(1354)
Escherichia coli
(391)
Bos taurus
(337)
Canis lupus familiaris
(139)
Xenopus laevis
(123)
Mycobacterium tuberculosis
(122)
cellular organisms
(97)
Plasmodium falciparum
(94)
Mammalia
(84)
Oryctolagus cuniculus
(45)
Rattus
(37)
Trypanosoma brucei
(34)
Halobacterium salinarum
(30)
Severe acute respiratory syndrome coronavirus 2
(28)
Neurospora crassa
(21)
Eukaryota
(20)
Cavia porcellus
(16)
Lactococcus lactis
(16)
Arabidopsis
(11)
Mus
(9)
Chordata
(7)
Mus sp.
(6)
Methanosarcina barkeri
(4)
Embryophyta
(4)
Influenza A virus
(3)
Organisms
Homo sapiens
(10190)
Mus musculus
(8088)
Arabidopsis thaliana
(685)
Rattus norvegicus
(602)
Saccharomyces cerevisiae
(558)
Drosophila melanogaster
(537)
soil metagenome
(306)
Escherichia coli
(263)
Danio rerio
(262)
Caenorhabditis elegans
(223)
Sus scrofa
(161)
Bos taurus
(146)
Oryza sativa
(136)
Gallus gallus
(122)
Ceratodon purpureus
(99)
Staphylococcus aureus
(99)
Schizosaccharomyces pombe
(98)
Pseudomonas aeruginosa
(96)
sponge metagenome
(85)
Zea mays
(80)
human gut metagenome
(80)
Bacillus subtilis
(65)
Bacillus velezensis
(65)
Candida albicans
(64)
Canis lupus familiaris
(59)
mouse gut metagenome
(59)
Solanum lycopersicum
(57)
Klebsiella pneumoniae
(55)
Triticum aestivum
(51)
unidentified
(49)
Repository
ENA
(51603)
biostudies-arrayexpress
(27115)
geo
(23535)
pride
(8160)
BioModels
(1462)
MassIVE
(1343)
MetaboLights
(1182)
EGA
(1140)
PAXDB
(960)
iProX
(859)
jPOST
(811)
dbGaP
(215)
GNPS
(208)
PeptideAtlas
(187)
PanoramaPublic
(115)
LINCS
(103)
EVA
(75)
GPMDB
(45)
Cell Collective
(29)
PMR
(11)
FAIRDOMHub
(7)
NODE
(7)
ExpressionAtlas
(3)
Tissue
Cell culture
(1635)
Epithelial cell
(451)
Brain
(417)
Permanent cell line cell
(245)
Liver
(232)
Blood plasma
(218)
Plant cell
(213)
Leaf
(194)
Blood
(171)
Kidney
(150)
Whole body
(145)
Cell suspension culture
(140)
Fibroblast
(135)
Lung
(131)
Others
(129)
Heart
(129)
Blood serum
(116)
Blood cell
(116)
T cell
(100)
Embryonic stem cell
(88)
Root
(88)
Hepatocyte
(88)
Plasma Non-glyco
(11)
Cell line
(3)
Kidney
(2)
Lung
(1)
Brain
(1)
Eye
(1)
Digestive System
(1)
Liver
(1)
Disease
Breast cancer
(174)
Alzheimer's disease
(79)
Parkinson's disease
(47)
COVID-19
(40)
Influenza
(20)
Diabetes mellitus
(17)
Cancer
(17)
Osteoarthritis
(8)
Bacterial infectious disease
(7)
Neurodegenerative disease
(7)
Inflammatory bowel disease
(6)
Heart disease
(5)
Osteoporosis
(3)
Retinal degeneration
(3)
Huntington's disease
(2)
Ovarian disease
(2)
Calcium metabolism disease
(2)
Lymphoid leukemia
(2)
Glucocorticoid-remediable aldosteronism
(2)
Down syndrome
(2)
Polycythemia due to hypoxia
(2)
Botulism
(2)
Human immunodeficiency virus infectious disease
(2)
Andersen-Tawil syndrome
(1)
Brugada syndrome
(1)
Paget's disease of bone
(1)
Benign glioma
(1)
Swine influenza
(1)
Cerebral degeneration
(1)
Ocular albinism
(1)
Technology Type
Illumina HiSeq 2000
(52)
Illumina
(36)
Illumina HiSeq 2500 (ILLUMINA)
(21)
Unknown, Affymetrix 500K
(11)
Illumina HiSeq 2500
(9)
Illumina MiSeq
(7)
Affymetrix 500K, unknown
(6)
Illumina HiSeq 2500, ILLUMINA
(5)
ILLUMINA, Illumina HiSeq 2000
(5)
Illumina Genome Analyzer II, Illumina HiSeq 2000
(4)
Illumina Genome Analyzer II
(4)
ILLUMINA, Illumina HiSeq 2500
(3)
Illumina HiSeq 2000, ILLUMINA
(3)
ILLUMINA, Illumina HiSeq 2500, Illumina HiSeq 2500 (ILLUMINA)
(2)
ILLUMINA, Illumina HiSeq 4000
(2)
Illumina MiSeq, ILLUMINA
(2)
Illumina HiSeq 2000, Illumina Genome Analyzer II
(2)
Illumina HiSeq 2000, ILLUMINA, Illumina HiSeq 4000
(1)
Illumina HiSeq 3000, Illumina HiSeq 2000, Illumina HiSeq 4000, ILLUMINA
(1)
Illumina MiSeq, Illumina HiSeq 2500, ILLUMINA
(1)
Illumina HumanOmni5
(1)
Human Cardio Metabochip
(1)
Combined on identical nucleotide universal identifier, Illumina HumanWG-6 version 3 or Illumina HumanHT-12 expression bead chip
(1)
ILLUMINA, NextSeq 500, Illumina HiSeq 2000
(1)
Illumina HiSeq 2000 (ILLUMINA), Illumina HiSeq 1500 (ILLUMINA)
(1)
OXFORD_NANOPORE, MinION
(1)
NextSeq 500, Illumina HiSeq 2500, ILLUMINA
(1)
Illumina Omni 2.5
(1)
Illumina HiSeq 4000 (ILLUMINA), Illumina HiSeq 2500 (ILLUMINA), NextSeq 500 (ILLUMINA)
(1)
Illumina OncoArray
(1)
Instrument Platform
Illumina NovaSeq 6000
(513)
Illumina HiSeq 2000
(367)
NextSeq 500
(362)
Illumina HiSeq 2500
(321)
Illumina HiSeq 4000
(221)
Illumina MiSeq
(89)
NextSeq 550
(78)
Illumina Genome Analyzer IIx
(53)
NextSeq 2000
(53)
Illumina NovaSeq X
(46)
Illumina Genome Analyzer II
(39)
Illumina HiSeq 3000
(38)
Scanning hardware
(37)
GenePix 4000B [Axon Instruments]
(36)
Axon GenePix 4000B scanning hardware
(35)
Illumina HiSeq 1500
(35)
Axon- GenePix4000B
(33)
HiSeq X Ten
(30)
GenePix 4000A [Axon Instruments]
(26)
DNBSEQ-G400
(21)
Axon GenePix 4000A scanning hardware
(20)
G2565BA DNA microarray scanner [Agilent]
(20)
BGISEQ-500
(18)
NA
(17)
ScanArray Express HT
(16)
Agilent G2565AA and G2565BA Microarray Scanner
(15)
Illumina HiSeq 1000
(15)
418 [Affymetrix]
(13)
MinION
(13)
PromethION
(12)
Publication Date
2024
(5272)
2025
(4880)
2013
(4426)
2014
(4092)
2010
(4018)
2023
(3736)
2012
(3645)
2011
(3617)
2015
(3566)
2026
(3522)
2022
(3459)
2021
(3101)
2016
(3096)
2020
(2911)
2019
(2253)
2018
(1944)
2008
(1864)
2009
(1754)
2017
(1751)
2007
(1075)
2005
(902)
2006
(503)
2004
(145)
2003
(36)
2002
(9)
2027
(1)
UNIPROT ID/AC
P04049
(23)
Q02750
(23)
P28482
(22)
P04637
(21)
P62993
(18)
P00533
(17)
Q07889
(15)
P24864
(14)
Q00987
(14)
P01133
(13)
P24941
(12)
P27361
(12)
P01112
(12)
P01137
(12)
P31749
(12)
Q01094
(11)
P51452
(11)
P01308
(9)
P00734
(9)
P06400
(9)
Q14790
(9)
P07663
(9)
Q99558
(8)
P42345
(8)
P06493
(8)
O15111
(8)
O15519
(8)
Q9LKL2
(8)
P40763
(8)
Q00653
(8)
ENSEMBL ID
ENSG00000064012
(4)
ENSG00000077150
(4)
ENSG00000165661
(4)
ENSG00000176654
(4)
ENSG00000204531
(4)
ENSG00000101017
(3)
ENSG00000141510
(3)
ENSG00000135679
(3)
ENSG00000149968
(2)
ENSG00000148200
(2)
ENSG00000165556
(2)
ENSG00000141448
(2)
ENSMUST00000021413
(2)
ENSMUST00000019997
(2)
ENSG00000139318
(1)
ENSG00000168646
(1)
ENSG00000180198
(1)
ENST00000261769
(1)
ENST00000227507
(1)
ENST00000242261
(1)
ENST00000263341
(1)
ENSG00000151468
(1)
ENSG00000158828
(1)
ENSG00000154277
(1)
ENSG00000151552
(1)
ENSG00000116288
(1)
ENSG00000116688
(1)
ENSG00000142319
(1)
ENSG00000149295
(1)
ENSG00000213585
(1)
CHEBI ID
CHEBI:16761
(163)
CHEBI:15422
(150)
CHEBI:17126
(142)
CHEBI:29033
(81)
CHEBI:29034
(79)
CHEBI:16480
(71)
CHEBI:16863
(71)
CHEBI:17411
(69)
CHEBI:17029
(68)
CHEBI:27402
(66)
CHEBI:13086
(66)
CHEBI:27931
(65)
CHEBI:12886
(65)
CHEBI:52329
(63)
CHEBI:52327
(63)
CHEBI:52325
(63)
CHEBI:52328
(63)
CHEBI:31013
(63)
CHEBI:29108
(63)
CHEBI:11614
(62)
CHEBI:52326
(62)
CHEBI:52324
(62)
CHEBI:52977
(62)
CHEBI:28599
(62)
CHEBI:18020
(62)
CHEBI:61540
(61)
CHEBI:13711
(61)
CHEBI:27512
(60)
CHEBI:48943
(60)
CHEBI:17909
(60)
Metabolite Name
Hypoxanthine
(174)
Adenosine
(168)
Adenine
(166)
Taurine
(164)
Creatine
(163)
L-Phenylalanine
(163)
Uracil
(158)
Creatinine
(152)
L-Tyrosine
(151)
Uridine
(151)
Inosine
(145)
L-Tryptophan
(140)
Choline
(136)
Guanosine
(135)
L-Histidine
(134)
L-Proline
(133)
Betaine
(129)
Xanthine
(126)
L-Valine
(119)
Cytosine
(118)
Guanine
(117)
L-Glutamine
(116)
Thymine
(115)
L-Leucine
(113)
Cytidine
(113)
L-Threonine
(109)
Glycine
(108)
Ornithine
(105)
Azelaic acid
(104)
L-Methionine
(102)
First Public Date
2025
(6420)
2024
(6361)
2014
(4952)
2026
(4823)
2023
(4634)
2022
(3810)
2021
(3578)
2020
(3360)
2013
(3232)
2019
(2841)
2018
(2249)
2017
(2145)
2015
(1620)
2016
(1442)
2012
(77)
2011
(35)
2010
(24)
Modelling Approach
Ordinary differential equation model
(1046)
Constraint-based model
(132)
Other
(36)
Computational model
(24)
Machine learning
(17)
Population model
(14)
Differential equation model
(11)
Logical model
(10)
Physiologically based pharmacokinetic model
(9)
Petri net
(8)
Boolean model
(8)
Delayed differential equation model
(8)
Mathematical model
(6)
Metabolic network
(6)
Finite element spatial model
(2)
Dynamical characteristic
(2)
Spatial characteristic
(2)
Differential algebraic equation model
(2)
Steady-state model
(2)
Agent-based model
(2)
Support-vector machine
(1)
Regression method
(1)
Deep learning
(1)
Biochemical network
(1)
Protein-protein interaction network
(1)
Generalized logical model
(1)
Study status
Completed
(578)
Recruiting
(273)
Not provided
(153)
Terminated
(97)
Not yet recruiting
(97)
Active, not recruiting
(69)
Withdrawn
(24)
Enrolling by invitation
(11)
Ongoing
(5)
Suspended
(3)
Lab affiliation
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic
(41)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA
(35)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry
(30)
University of Edinburgh
(27)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany
(20)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany
(18)
Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany
(17)
IRCCS Istituto G Gaslini
(17)
Functional Proteomics, ICR
(17)
EDyP
(16)
Head of the Curie Institute Mass Spectrometry Platform
(14)
North Carolina State University
(12)
Professor of Genomic Evolution, School of Medicine, Conway Institute of Biomolecular and Biomedical Research, University College Dublin Belfield Dublin 4
(11)
USDA-ARS
(11)
Massachusetts Institute of Technology
(11)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark
(10)
Department of Biotechnology, TU Delft, The Netherlands
(10)
Institute of Molecular Biology (IMB)
(10)
The Institute of Cancer Research
(10)
Cornell University
(10)
Instituto de Investigaciones Sanitarias de Santiago de Compostela
(9)
Wageningen University
(9)
Wellcome Trust Sanger Institute
(9)
Department Biochemistry of Plant Interactions, Leibniz Institute of Plant Biochemistry, 06120 Halle (Saale), Germany
(8)
CNIO
(8)
Institute of Cancer Research, London
(8)
Max Planck Institute of Biochemistry
(8)
Weizmann Institute of Science
(8)
Utrecht University
(8)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany
(8)
Tags
pathogen
(3094)
pathogen:bacterium
(2380)
xref:PubMed:33911273
(393)
pathogen:fungus
(300)
pathogen:protozoan
(195)
pathogen:virus
(150)
pathogen:helminth
(69)
covid19
(55)
xref:PubMed:29166127
(29)
xref:PubMed:21317366
(20)
xref:PubMed:41130207
(20)
wastewater
(19)
xref:PubMed:41237776
(17)
xref:PubMed:32518403
(15)
xref:PubMed:32051003
(15)
xref:PubMed:39813317
(15)
xref:PubMed:30827679
(14)
xref:PubMed:36640353
(13)
xref:PubMed:25689317
(11)
xref:PubMed:31611402
(11)
xref:PubMed:40128456
(11)
xref:PubMed:39948437
(11)
xref:PubMed:35710802
(11)
xref:PubMed:37329883
(10)
xref:PubMed:36333583
(10)
xref:PubMed:28448511
(10)
xref:PubMed:38816647
(10)
xref:PubMed:39372038
(9)
xref:PubMed:36048957
(9)
xref:PubMed:36522426
(9)
Keyword
Fluorouracil
(117)
Leucovorin
(108)
Oxaliplatin
(104)
Levoleucovorin
(90)
Irinotecan
(85)
Stage IV colon cancer
(74)
Bevacizumab
(73)
Stage IV rectal cancer
(72)
Adenocarcinoma of the rectum
(72)
Capecitabine
(71)
Calcium
(70)
Recurrent rectal cancer
(62)
Adenocarcinoma of the colon
(61)
Recurrent colon cancer
(58)
Stage III rectal cancer
(52)
Cetuximab
(45)
Stage III colon cancer
(43)
Stage II rectal cancer
(39)
Colonoscopy
(35)
Antibodies
(27)
Antibodies, Monoclonal
(26)
Stage II colon cancer
(23)
Antineoplastic Agents, Immunological
(20)
Immunoglobulins
(20)
Rectal cancer
(20)
Screening
(18)
Folic Acid
(16)
Panitumumab
(16)
Liver metastases
(16)
Stage I rectal cancer
(15)
IsPrivate
False
(1462)
Model Flag
Non Kinetic
(193)
Non Miriam
(14)
Sbml Extended
(3)
Submitter Keywords
Machine Learning Model
(62)
Immuno-oncology
(55)
Ersilia
(40)
FAIR-AIML
(33)
FROG
(19)
Not Peer Reviewed
(17)
COVID-19
(14)
Manuscript Accepted
(4)
TransQST
(3)
Oncology
(1)
Classification
bacteria
(2380)
fungi
(300)
protozoa
(195)
viruses
(150)
helminths
(69)
Modification
2x(15)N labeled L-lysine
(15)
N6
(14)
4x(15)N labeled L-arginine
(14)
4-tetrahydrothiazine-3-carboxylic acid
(14)
15.994915
(13)
Not available
(13)
N6-dimethyl-L-lysine
(12)
57.021464
(11)
42.010565
(6)
-17.026549
(5)
0.984016
(4)
4x(2)H labeled dimethylated residue
(4)
6x(2)H labeled dimethylated L-arginine
(4)
6.020129
(2)
45.029395
(2)
10.008269
(2)
-18.010565
(2)
3.994915
(1)
19.989829
(1)
Methionine
(1)
14.01565
(1)
28.0313
(1)
1x(15)N labeled L-leucine
(1)
4'-dihydroxyphenylalanine
(1)
79.966331
(1)
3x(2)H labeled N6-acetyl-L-lysine
(1)
1x(15)N labeled L-valine
(1)
71.037114
(1)
57.02146
(1)
0.984
(1)
Study type
Transcription profiling by array
(16726)
RNA-seq of coding RNA
(2932)
ChIP-seq
(1696)
ChIP-chip by tiling array
(812)
Comparative genomic hybridization by array
(667)
Unknown experiment type
(566)
RNA-seq of non coding RNA
(469)
Methylation profiling by array
(411)
Other
(385)
Methylation profiling by high throughput sequencing
(288)
RNA-seq of coding RNA from single cells
(254)
Transcription profiling by tiling array
(233)
ChIP-chip by array
(205)
Genotyping by array
(155)
Transcription profiling by RT-PCR
(151)
DNA-seq
(151)
MicroRNA profiling by array
(103)
RNA-seq of total RNA
(88)
Proteomic profiling by array
(72)
Cell line - High-throughput sequencing
(69)
Animal - High-throughput sequencing
(48)
Transcription profiling by SAGE
(46)
RNAi profiling by array
(44)
Genotyping by high throughput sequencing
(37)
High-throughput sequencing
(34)
ATAC-seq
(33)
MicroRNA profiling by high throughput sequencing
(31)
Human - High-throughput sequencing
(29)
Animal - One-color microarray
(22)
RIP-seq
(22)
Release Date
2022
(77109)
2023
(70267)
2021
(65827)
2025
(60343)
2024
(57975)
2020
(52099)
2019
(40807)
2018
(35614)
2017
(29755)
2016
(27257)
2015
(24442)
2014
(21724)
2013
(17259)
2012
(14726)
2011
(12940)
2010
(11765)
2009
(8007)
2026
(7227)
2008
(6938)
2007
(4657)
2006
(3546)
2005
(2782)
2004
(1797)
2003
(1434)
2002
(1142)
2001
(973)
2000
(854)
1999
(701)
1998
(660)
1997
(230)
Location
United States
(370)
United Kingdom
(165)
France
(144)
China
(80)
Australia
(73)
Italy
(67)
Canada
(65)
Germany
(63)
Spain
(61)
Netherlands
(49)
Belgium
(41)
Iran
(36)
Denmark
(35)
Japan
(30)
South Korea
(28)
Sweden
(27)
Switzerland
(21)
Turkey
(20)
Brazil
(19)
Austria
(19)
Taiwan
(17)
Puerto Rico
(17)
Poland
(15)
India
(14)
Egypt
(14)
Hungary
(14)
New Zealand
(13)
Hong Kong
(13)
Singapore
(11)
Israel
(11)
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Bacillus amyloliquefaciens it-45
Bacillus amyloliquefaciens it-45 Genome sequencing
PRJNA73591
|
ENA
Cite
Magnetofaba australis IT-1
Magnetofaba australis IT-1 Genome sequencing and assembly
PRJNA316067
|
ENA
Cite
Pseudomonas serboccidentalis strain:IT P374
Pseudomonas serboccidentalis strain:IT P374 Genome sequencing
PRJNA859669
|
ENA
Cite
Methylomarinovum caldicuralii strain:IT-9
Genome analysis of a marine methanotroph, Methylomarinovum caldicuralii IT-9
PRJDB11744
|
ENA
Cite
Methylomarinum vadi strain:IT-4
Methylomarinum vadi strain:IT-4 Genome sequencing and assembly
PRJNA246204
|
ENA
Cite
Pseudomonas sp. ITP1 strain:IT-P1
Pseudomonas sp. ITP1 strain:IT-P1 Genome sequencing
PRJNA863438
|
ENA
Cite
WGS of Plasmodium falciparum IT
WGS of Plasmodium falciparum IT
PRJEB2179
|
ENA
Cite
Sphagnum squarrosum cultivar:IT-1
Sphagnum squarrosum IT-1 Resequencing
PRJNA444047
|
ENA
Cite
Metagenome of Vulcano Island (it)
Gene-centered metagenomic analysis of Vulcano Island (it)
PRJEB47788
|
ENA
Cite
Transcriptome analysis of NCC-IT-A3 cells by Barasertib treatment
Transcriptome analysis of NCC-IT-A3 cells by Barasertib treatment
PRJNA744074
|
ENA
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