Jacobs M M - OmicsDI

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Unknown (4038)
Proteomics (80)
Transcriptomics (72)
Genomics (37)
Metabolomics (9)
Genomic (2)
Models (1)
Multiomics (1)

Organisms

Homo sapiens (87)
Mus musculus (34)
Orbicella annularis (10)
Drosophila melanogaster (5)
Mycobacterium tuberculosis (2)
Escherichia coli (2)
Synechocystis sp. PCC 6803 (2)
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Ralstonia solanacearum UW551 (1)
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Bacteria (1)
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Mycobacterium phage Myrna (1)
Rattus norvegicus (1)
Saccharomyces cerevisiae (1)
Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 (1)
Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 (1)
Salmonella enterica subsp. enterica serovar Typhi str. CT18 (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S (1)
Sus scrofa domesticus (1)

Organisms

Mycobacterium tuberculosis (4)
Mycolicibacterium smegmatis (2)
Belgica antarctica (1)
Mycolicibacterium smegmatis MC2 155 (1)
Mycobacterium tuberculosis H37Rv (1)
Bos taurus (1)

Repository

biostudies-arrayexpress (77)
pride (61)
EGA (20)
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ENA (11)
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Tissue

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Disease

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Lymphoma (1)
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Technology Type

Mass Spectrometry (61)
Shotgun proteomics (37)
Bottom-up proteomics (10)
Mass spectrometry (8)
Affinity purification coupled with mass spectrometry proteomics (7)
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Illumina HiSeq 2000 (4)
Data-independent acquisition (4)
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SRM/MRM (2)
Top-down proteomics (2)

Instrument Platform

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Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
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Q Exactive (Thermo Scientific) (1)

Publication Date

2012 (18)
2020 (15)
2014 (14)
2024 (12)
2021 (11)
2016 (10)
2013 (10)
2023 (9)
2011 (8)
2025 (8)
2022 (7)
2019 (7)
2010 (7)
2026 (7)
2018 (6)
2017 (6)
2015 (5)
2009 (2)
2008 (2)
2007 (2)
2004 (2)

UNIPROT ID/AC

1148.1652882 (1)
1148.1653315 (1)
6PGD_SYNY3 (1)
6PGL_SYNY3 (1)
AAR_SYNY3 (1)
AAT_SYNY3 (1)
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AKR_SYNY3 (1)
ALDEC_SYNY3 (1)
ALF1_SYNY3 (1)
ALF2_SYNY3 (1)
AMID_SYNY3 (1)
AMPA_SYNY3 (1)
ANMK_SYNY3 (1)
APBC_SYNY3 (1)
APCB_SYNY3 (1)
APCD_SYNY3 (1)
APCE_SYNY3 (1)
APCF_SYNY3 (1)
APT_SYNY3 (1)
ARGB_SYNY3 (1)
ARGC_SYNY3 (1)
ARGD_SYNY3 (1)
ARGJ_SYNY3 (1)

CHEBI ID

CHEBI:16704 (4)
CHEBI:16708 (4)
CHEBI:16811 (4)
CHEBI:17568 (4)
CHEBI:18186 (4)
CHEBI:25094 (4)
CHEBI:28044 (4)
CHEBI:28300 (4)
CHEBI:30769 (4)
CHEBI:15422 (3)
CHEBI:15428 (3)
CHEBI:15882 (3)
CHEBI:15891 (3)
CHEBI:16027 (3)
CHEBI:16119 (3)
CHEBI:16449 (3)
CHEBI:16680 (3)
CHEBI:16737 (3)
CHEBI:16761 (3)
CHEBI:16856 (3)
CHEBI:16995 (3)
CHEBI:17268 (3)
CHEBI:17368 (3)
CHEBI:17405 (3)
CHEBI:17509 (3)
CHEBI:17562 (3)
CHEBI:17596 (3)
CHEBI:17821 (3)
CHEBI:17822 (3)
CHEBI:18211 (3)

Metabolite Name

Adenine (3)
Glutathione (3)
Inosine (3)
Methionine (3)
Phosphoenolpyruvate (3)
Taurine (3)
Uracil (3)
Uridine (3)
1-Methyladenosine (2)
2-Methylbutyroylcarnitine (2)
2-hydroxyglutaric acid (2)
4-Pyridoxate (2)
6-Phospho-D-gluconate (2)
ADP (2)
AMP (2)
ATP (2)
Acetyl-CoA (2)
Alanine (2)
Anthranilate (2)
Arginine (2)
Asparagine (2)
Aspartate (2)
Betaine (2)
Citrulline (2)
Creatine (2)
Creatinine (2)
Cytidine (2)
D-Erythrose 4-phosphate (2)
Deoxyinosine (2)
Dihydrouracil (2)

IsPrivate

False (1)

First Public Date

2014 (8)
2026 (1)
2024 (1)
2015 (1)

Classification

bacteria (5)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (39)
RNA-seq of coding RNA (14)
Methylation profiling by array (11)
ChIP-seq (6)
Comparative genomic hybridization by array (2)
RNA-seq of non coding RNA (2)
Cell line - One-color microarray (1)
Transcription profiling by tiling array (1)
Genotyping by array (1)

Release Date

2022 (450)
2021 (416)
2023 (383)
2025 (368)
2024 (368)
2020 (325)
2019 (275)
2018 (235)
2017 (211)
2016 (206)
2015 (171)
2014 (145)
2013 (110)
2012 (101)
2011 (82)
2010 (68)
2009 (50)
2026 (43)
2008 (30)
2007 (30)
2004 (10)
2006 (9)
2005 (6)
2003 (6)
2000 (5)
2002 (4)
2001 (3)
1999 (3)
1998 (2)

Lab affiliation

Department of Ecology & Evolutionary Biology, University of California, Los Angeles, CA (8)
VIB-UGent Center for Medical Biotechnology (3)
Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA (2)
Team SOAP, CRCI2NA, Nantes Université, Inserm, CNRS, Université d’Angers, Nantes, France (2)
Washington University in St. Louis, USA (2)
1. Bioanalytical Mass Spectrometry Group, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany 2. Bioanalytics, University Medical Center, Robert-Koch-Straße 40, 37075 Göttingen, Germany (1)
Advanced Science Research Center City University of New York (1)
BioMediTech & Tampere University Hospital, Faculty of Medicine and Health Technology, Tampere University, Arvo Ylpön katu 34 (ARVO), FI-33520 Tampere, Finland (1)
BioOrganic Mass Spectrometry laboratory (LSMBO) Institut Plurisciplinaire Hubert Curien University of Strasbourg. France (1)
Brigham Young University (1)
Cell and Chemical Biology Leiden University Medical Center (1)
Department of Biology, Catholic University of America (1)
Department of Biomedical Sciences, unit of Diagnostic Bacteriology, Institute of Tropical Medicine (1)
Department of Microbiology and Immunology, Jacobs School of Medicine & Biomedical Sciences, University at Buffalo, Buffalo, NY 14203, USA (1)
Department of Neurology, Erasmus MC, Rotterdam, The Netherlands (1)
Department of Redox Metabolism, Institute of Biochemistry, University of Cologne, Cologne, Germany (1)
Dept. of Molecular Biology, Princeton, NJ USA 08544 (1)
Division of Cardiovascular Medicine, Department of Medicine, Abboud Cardiovascular Research Center, University of Iowa Carver College of Medicine, Iowa City, Iowa, USA. Fraternal Order of Eagles Diabetes Research Center, Pappajohn Biomedical Institute, and Heart and Vascular Center, University of Iowa, University of Iowa, Iowa City, Iowa, USA. (1)
Division of Endocrinology, Diabetes, and Metabolism, Beth Israel Deaconess Medical Center Harvard Medical School Broad Institute of Harvard and MIT (1)
Erasmus MC (1)
Evotec (München) GmbH (1)
Flemish Institute for Technological Research (VITO) Boeretang 200 2400 Mol (1)
Forschungsinstitut für Molekulare Pathologie GmbH Campus-Vienna-Biocenter 1 1030 Vienna Austria (1)
Head of Proteomics (1)
Human Health Therapeutics, National Research Council of Canada (1)
IMP - IMBA Protein Chemistry Facility Dr. Bohrgasse 3 1030 Vienna Austria (1)
Institute of Molecular Biology (IMB), Mainz, Germany (1)
Karolinska Institutet, Stockholm, Sweden (1)
Lineberger Comprehensive Cancer Center, Dept of Cell Biology & Physiology, UNC Chapel Hill (1)
Mass Spectrometry/Proteomics Facility, Netherlands Cancer Institute, Amsterdam, Netherlands (1)

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Integrating serum protein electrophoresis with mass spectrometry, a new workflow for M-protein detection and quantification

Serum protein electrophoresis (SPE) and immunofixation electrophoresis (IFE) are standard tools for multiple myeloma (MM) routine diagnostics. M-protein is a biomarker for MM that can be quantified with SPE and characterized with IFE. We have investigated combining SPE/IFE with targeted mass spectro...

ORGANISM(S): Homo sapiens (Human)

2020-01-07 | PXD016325 | Pride