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Transcriptomics[E-MTAB-75] Cryptic unstable transcripts in yeast
Poly(A) and CUT RNA fractions are compared using 3 'Long-SAGE deep-sequencing. ArrayExpress Release Date: 2008-12-19 Publication Title: Widespread bidirectional promoters are the major source of cryptic transcripts in yeast Publication Author List: Helen Neil, Christophe Malabat, Yves d'Aubenton-Car...
ORGANISM(S): Saccharomyces cerevisiae 
2011-02-05 | GSE25132 | GEO
TranscriptomicsTranscription profiling of S. cerevisiae rrp6 delta vs. controls
BMA64 rrp6 delta::HIS3 vs BMA64 WT (Mat a), grown at 30°C to OD 0.6 in YPD. BMA64 rrp6 delta::URA3, trf4 delta::KAN vs BMA64 WT, grown at 30°C to OD<0.6 in YPD.
ORGANISM(S): Saccharomyces cerevisiae 
2008-06-12 | E-GEOD-2579 | biostudies-arrayexpress
TranscriptomicsQuality control of transcription start site selection by Nonsense-Mediated-mRNA Decay
Nonsense-mediated mRNA decay (NMD) is a translation-dependent RNA quality-control pathway targeting transcripts such as messenger RNAs harboring premature stop-codons or short upstream open reading frame (uORFs). Our transcription start sites (TSSs) analysis of Saccharomyces cerevisiae cells deficie...
ORGANISM(S): Saccharomyces cerevisiae BY4741 
2015-04-24 | E-GEOD-64139 | biostudies-arrayexpress
ProteomicsQuantitative proteomics of affinity purified yeast NMD complexes
Nonsense-mediated mRNA decay (NMD) is a major translation-dependent RNA degradation pathway required for embryo development and telomere maintenance. Core NMD factors Upf1, Upf2 and Upf3 are conserved from yeast to mammals but a model of the NMD machinery compatible with all eukaryotes is not yet av...
ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast) 
2018-03-12 | PXD007159 | Pride
Ltq-orbitrap velos Lc-ms/ms Affinity purification Yeast Maxquant Label-free Tap 
TranscriptomicsHigh throughput sequencing using long-SAGE to compare poly(A) and CUT RNA fractions in yeast
Poly(A) and CUT RNA fractions are compared using 3 'Long-SAGE deep-sequencing.
ORGANISM(S): Saccharomyces cerevisiae 
2009-01-01 | E-MTAB-75 | biostudies-arrayexpress
TranscriptomicsTiling path analysis of yeast Poly(A) and CUT RNA fractions for comparison with 3prime long-SAGE deep-sequencing data
Poly(A) and CUT RNA fractions were hybridized on Affymetrix tiling arrays to be compared to 3'Long-SAGE deep-sequencing data.
ORGANISM(S): Saccharomyces cerevisiae 
2009-01-01 | E-TABM-602 | biostudies-arrayexpress
GenomicsSaccharomyces cerevisiae
[E-MTAB-75] Cryptic unstable transcripts in yeast
PRJNA134585 | ENA
no omics definedTranscription profiling of S. cerevisiae strains with controlled expression of hmo1 and Ifh1
Effect of hmo1 on yeast transcriptional response, as compared to Ifh1
ORGANISM(S): Saccharomyces cerevisiae 
2007-09-17 | E-MEXP-651 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by tiling array of combinations of Rrp6p and Dis3p catalytic mutants to investigate extensive degradation of RNA precursors by the exosome in yeast
The exosome is a complex involved in the maturation of rRNA and sn-snoRNA, the degradation of short lived non-coding RNAs and in the quality control of RNAs produced in mutants. It contains two catalytic subunits, Rrp6p and Dis3p, whose specific functions are not fully understood. We analyzed the tr...
ORGANISM(S): Saccharomyces cerevisiae 
2012-09-19 | E-MTAB-1246 | biostudies-arrayexpress
UnknownNonsense-mediated mRNA Decay Involves Two Distinct Upf1-bound Complexes
Not available
S-SCDT-EMBOJ-2018-99278 | biostudies-other
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