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ProteomicsUnravelling the molecular mechanism underlying drought stress response in chickpea via integrated multi-omics analysis
This study was aimed to deal with a comparative proteome analysis of the two chickpea genotypes with contrasting response to drought stress, ICC 4958 (drought-tolerant, DT) and ICC 1882 (drought-sensitive, DS). Proteins were extracted from the root tissues collected from the control and drought stre...
ORGANISM(S): Cicer arietinum (Chickpea) (Garbanzo) 
2023-07-20 | PXD041434 | Pride
Chickpea  drought  proteome  nanolc-ms/ms 
TranscriptomicsTranscription profiling of Arabidopsis wild type and transgenic plants overexpressing rice topoisomerase6 genes
10-day-old wild-type and homozygous transgenic Arabidopsis seedlings (overexpressing OsTOP6A3 and OsTOP6B) grown under normal growth conditions were used for total RNA isolation. The 5 micrograms of each total RNA sample was processed for microarray analysis according to Affymetrix protocol. Experi...
ORGANISM(S): Arabidopsis thaliana 
2008-06-13 | E-GEOD-5465 | biostudies-arrayexpress
ProteomicsIntegrated transcriptome, proteome and metabolome analyses revealed secondary metabolites and auxiliary carbohydrate metabolism augmenting drought tolerance in rice
This study was aimed to deal with a comparative proteome analysis of the two rice genotypes with contrasting response to drought stress, N22 (drought-tolerant, DT) and IR64 (drought-sensitive, DS). Proteins were extracted from the root tissues collected from the control and drought stressed plants o...
ORGANISM(S): Oryza sativa (Rice) 
2026-07-22 | PXD042392 | Pride
Rice  drought  proteome  nanolc-ms/ms 
TranscriptomicsChIP-chip analysis of GBF1 in the presence and absence of its heterodimerizing partners, HY5 and HYH
Transcription factors are key components of light signalling as they amplify the signal, which results in massive changes in genome-wide expression during photomorphogenesis. Three bZIP transcription factors (TFs), namely GBF1, HY5, and HYH, form heterodimers with each other and regulate photomorpho...
ORGANISM(S): Arabidopsis thaliana 
2014-03-24 | E-GEOD-36965 | biostudies-arrayexpress
TranscriptomicsChickpea Transcriptome Atlas II - Abiotic Stress
In this study, we aim to present a global view of transcriptome dynamics during various abiotic stresses in chickpea. We generated about 252 million high-quality reads from eight libraries (control, desiccation, salinity and cold stress samples for roots and shoots) using Illumina high-throughput se...
ORGANISM(S): Cicer arietinum 
2014-08-27 | E-GEOD-53711 | biostudies-arrayexpress
TranscriptomicsCatharanthus Transcriptome and Gene Expression
In this study, we aim to present a global transcriptome analysis of medicinal plant, Catharanthus roseus. We generated about 343 million high-quality reads from three tissues (leaf, root and flower) using Illumina platform. We performed an optimized de novo assembly of the reads and estimated transc...
ORGANISM(S): Catharanthus roseus 
2014-07-29 | E-GEOD-57326 | biostudies-arrayexpress
TranscriptomicsPorteresia transcriptome sequencing
In this study, we aim to present the complete transcriptome of Asian wild rice, Porteresia. We generated about 375 million high-quality reads for five different conditions (ranging from 65 to 90 million reads for each condition) using Illumina high-throughput sequencing GAII platform. We mapped the ...
ORGANISM(S): Oryza coarctata 
2013-11-05 | E-GEOD-44913 | biostudies-arrayexpress
TranscriptomicsChickpea Transcriptome Atlas - I
In this study, we aim to present a global view of transcriptome dynamics during flower development in chickpea. We generated around 234 million high-quality reads for eight flower development stages (ranging from 16 to 40 million reads for each stage) and 91 million high-quality reads from three veg...
ORGANISM(S): Cicer arietinum 
2014-01-09 | E-GEOD-42679 | biostudies-arrayexpress
TranscriptomicsChickpea Small RNA Atlas - Development
In this study, we sequenced small RNA content from seven major tissues/organs employing Illumina technology. More than 154 million reads were generated using Illumina high-throughput sequencing GAII platform, which represented more than 20 million distinct small RNA sequences. After pre-processing, ...
ORGANISM(S): Cicer arietinum 
2014-09-08 | E-GEOD-51300 | biostudies-arrayexpress
TranscriptomicsExpression data from 18h-fasted WT versus KLF15-null mice: heart
We used microarray analysis to identify differences in gene expression levels in heart following an 18h (overnight) fast in WT control and KLF15-null mice Heart tissue was isolated from 3-4 month old, 18h-fasted WT and KLF15-null male mice for RNA extraction and hydridization on Affymetrix microarra...
ORGANISM(S): Mus musculus 
2014-01-09 | E-GEOD-53231 | biostudies-arrayexpress
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