James E A EA - OmicsDI

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Unknown (473)
Genomics (36)
Proteomics (10)
Metabolomics (8)
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Organisms

Homo sapiens (41)
Mus musculus (2)
Escherichia coli ETEC H10407 (1)
Aspergillus fumigatus (1)
Zea mays (1)
Pseudomonas aeruginosa (1)

Repository

EGA (32)
biostudies-arrayexpress (10)
MassIVE (7)
MetaboLights (7)
pride (3)
BioModels (1)
GNPS (1)

Tissue

Airway fluid (1)
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Disease

Cystic fibrosis (1)

Technology Type

Mass spectrometry (6)
Mass Spectrometry (3)
Shotgun proteomics (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Affymetrix 6.0 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina_2.5M (1)
Illumina_Infinium_HumanMethylation450, Illumina_HumanHT-12v4 (1)
Mass spectrometry assay (1)
SWATH MS (1)

Instrument Platform

Q Exactive (5)
LTQ Orbitrap Elite (4)
Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - positive - reverse phase (3)
SYNAPT G2-Si (2)
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Xevo G2 XS Tof (2)
Xevo G2-XS QTof (2)
Direct infusion MS - positive (2)
Liquid Chromatography MS - alternating - hilic (2)
Illumina HiSeq 2000 (1)
Direct infusion MS - (1)
Direct infusion MS - negative (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2015 (3)
2012 (3)
2023 (3)
2014 (2)
2020 (2)
2022 (2)
2021 (2)
2019 (2)
2018 (2)
2011 (1)
2009 (1)
2005 (1)
2017 (1)

CHEBI ID

CHEBI:17084 (3)
CHEBI:17768 (3)
CHEBI:28300 (3)
CHEBI:28842 (3)
CHEBI:30769 (3)
CHEBI:116314 (2)
CHEBI:15354 (2)
CHEBI:15428 (2)
CHEBI:15676 (2)
CHEBI:15698 (2)
CHEBI:15710 (2)
CHEBI:15727 (2)
CHEBI:15756 (2)
CHEBI:15760 (2)
CHEBI:15891 (2)
CHEBI:16196 (2)
CHEBI:16235 (2)
CHEBI:16344 (2)
CHEBI:16737 (2)
CHEBI:16750 (2)
CHEBI:16870 (2)
CHEBI:16919 (2)
CHEBI:17148 (2)
CHEBI:17234 (2)
CHEBI:17311 (2)
CHEBI:17351 (2)
CHEBI:17368 (2)
CHEBI:17562 (2)
CHEBI:17596 (2)
CHEBI:17724 (2)

Metabolite Name

16-hydroxypalmitate (2)
2-hydroxyglutarate (2)
Alpha-ketoglutarate (2)
Citrate (2)
Fumarate (2)
Glucose (2)
Glutamine (2)
Malate (2)
Succinate (2)
(+)-15-nor-4-thujopsen-3-one (1)
(10S)-Juvenile hormone III diol (1)
(1R,2R)-3-oxo-2-(2'Z-pentenyl)-cyclopentanebutanoic acid (1)
(1S,2S)-3-oxo-2-pentyl-cyclopentanebutanoic acid (1)
(2'S,5'R)-4-methyl-l-(5'-methyl-2',3',4',5'-tetrahydro[2' ',3' '-bifuran]-5'-yl)pentan-2-one (1)
(25R)-3beta,4beta-dihydroxycholest-5-en-26-oate(1-) (1)
(2S)-2-{[1-(R)-Carboxyethyl]amino}pentanoate (1)
(4R,7R)-4-Isopropenyl-7-methyl-2-oxo-oxepanone (1)
(5Z,7E)-9,10-seco-5,7,10(19)-cholestatriene (1)
(5Z,7E,22E,24E,26E)-(1S,3R)-26a,26b-dihomo-27-nor-9,10-seco-5,7,10(19),22,24,26(26a)-cholestahexaene-1,3,26b-triol (1)
(9Z)-Hexadecenoic acid (1)
(9Z)-Tetradecenoic acid (1)
(R)-1-Aminopropan-2-ol (1)
(R)-2-Hydroxyglutarate (1)
(R)-3-Hydroxybutanoate (1)
(S)-Malate (1)
(S)-Succinyldihydrolipoamide (1)
(Z)-22-Hentriacontene-2,4-dione (1)
1,2-Epoxy-1,2,7,7',8,8',11,12-octahydro-psi,psi-carotene (1)
1,2-dipalmitoyl-GPC (16:0/16:0) (1)
1,20-Eicosanediol (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Modelling Approach

Constraint-based model (1)

Study type

ChIP-seq (4)
Transcription profiling by array (4)
Comparative genomic hybridization by array (1)
RNA-seq of coding RNA (1)

Release Date

2021 (45)
2020 (45)
2022 (44)
2018 (36)
2025 (35)
2023 (34)
2016 (33)
2019 (32)
2015 (31)
2024 (30)
2014 (28)
2017 (23)
2011 (16)
2012 (13)
2013 (11)
2026 (9)
2010 (8)
2009 (3)
2008 (3)
2007 (2)
2005 (1)
2004 (1)

Lab affiliation

Diabetes & Metabolism, Garvan Institute of Medical Research (1)
The University of Sydney (1)
University of Washington Department of Genome Sciences (1)

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Metabolomic and Metataxonomic Fingerprinting of Human Milk Suggests Compositional Stability over a Natural Term of Breastfeeding to 24 Months

Sparse data exist regarding the normal range of composition of maternal milk beyond the first postnatal weeks. This single timepoint, observational study in collaboration with the 'Parenting Science Gang' citizen science group evaluated the metabolite and bacterial composition of human milk from 62 ...

2022-02-11 | MTBLS1370 | MetaboLights

Lipid biomarkers for algal resistance to viral infection in the ocean

Marine viruses play a key role in regulating phytoplankton populations, greatly affecting the biogeochemical cycling of major nutrients in the ocean. Resistance to viral infection has been reported for various phytoplankton species under laboratory conditions. Nevertheless, the occurrence of resi...

2023-06-12 | MTBLS3323 | MetaboLights

Omega-3 polyunsaturated fatty acid profiles and relationship with cardiometabolic risk factors in Cree (Eeyouch) of Northern Quebec.

Not available

S-EPMC4947832 | biostudies-literature

Appeal and Sensory Characteristics of Oral Nicotine Products in Young Adults Who Vape E-Cigarettes.

Not available

S-EPMC12824951 | biostudies-literature

Spatial patterns of microbial communities across surface waters of the Great Barrier Reef.

Not available

S-EPMC7428009 | biostudies-literature

The exercise-regulated skeletal muscle phosphoproteome

Four healthy male volunteers (age: 24 - 27; BMI: 24.2 - 25.9 kg/m2) underwent a single bout of high-intensity bicycle exercise reaching a VO2 max approximately 95% with blood samples and muscle biopsies taken immediately pre- and post-exercise. Subjects reached 95% VO2 max in approximately 9 to 12 m...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2017-03-29 | MSV000080777 | MassIVE

Cognitive Motor Dissociation in Disorders of Consciousness.

Not available

S-EPMC7617195 | biostudies-literature

Effects of Electronic Cigarette Constituents on the Human Lung: A Pilot Clinical Trial.

Not available

S-EPMC7007320 | biostudies-literature

Biomarkers of Exposure and Effect in the Lungs of Smokers, Nonsmokers, and Electronic Cigarette Users.

Not available

S-EPMC7064803 | biostudies-literature

Recall of Flavor at First E-cigarette Use and Its Association with E-cigarette Progression: The Mediating Effects of First Sensory Experience.