James Paul P - OmicsDI

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Unknown (322)
Transcriptomics (72)
Genomics (61)
Proteomics (26)
Metabolomics (11)
Genomic (5)
Models (2)
Multiomics (1)

Organisms

Homo sapiens (106)
Mus musculus (17)
Rattus norvegicus (3)
Streptococcus sp. 'group A' (2)
Zea mays (2)
Bos taurus (2)
Sus scrofa (2)
Danio rerio (2)
Arabidopsis (1)
Bacillus anthracis str. Ames (1)
Salmonella enterica (1)
Pan troglodytes (1)
Blumeria graminis (1)
Euphausia superba (1)
Schizosaccharomyces pombe (1)
Salmo salar (1)
Oncorhynchus mykiss (1)
Pseudomonas aeruginosa PAO1 (1)
Glycine max (1)
Ovis aries (1)
Caenorhabditis elegans (1)
Human gammaherpesvirus 8 (1)
Human herpesvirus 8 strain rKSHV.219 (1)
Phytophthora infestans T30-4 (1)

Repository

biostudies-arrayexpress (74)
EGA (59)
pride (14)
MetaboLights (11)
MassIVE (9)
dbGaP (5)
BioModels (2)
jPOST (2)
PeptideAtlas (1)

Tissue

Epithelial cell (3)
B cell (1)
Cell culture (1)
Endocardial cell (1)
Fibroblast (1)
Lung (1)
Neural cell (1)
Oligodendrocyte (1)
T cell (1)

Disease

Systemic lupus erythematosus (1)
Breast cancer (1)
COVID-19 (1)
Human immunodeficiency virus infectious disease (1)
Kaposi's sarcoma (1)
Krabbe disease (1)
Niemann-Pick disease (1)

Technology Type

Mass Spectrometry (14)
Shotgun proteomics (10)
Illumina 15K (8)
Mass spectrometry (8)
Affymetrix 6.0 (2)
Mass spectrometry assay (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Illumina 1.2M, Affymetrix 6.0 (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
Illumina OncoArray (1)
NMR spectroscopy (1)
Bottom-up proteomics (1)
Gel-based experiment (1)
HDMSE (1)

Instrument Platform

Illumina NovaSeq 6000 (3)
Q Exactive (3)
Illumina HiSeq 4000 (2)
Q Exactive HF-X (2)
LTQ Orbitrap (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina-compatible library preparation equipment (1)
Monarch RNA purification column system (1)
Standard mammalian cell culture equipment (1)
Agilent DNA microarray scanner G2565CA (1)
Orbitrap Eclipse (1)
Orbitrap Fusion (1)
Xevo G2-S QTof (1)
5975C Series GC/MSD (Agilent) (1)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)
GCMS-QP2010 Plus (Shimadzu) (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Nuclear Magnetic Resonance (NMR) - (1)
SYNAPT HDMS (Waters) (1)

Publication Date

2010 (11)
2021 (10)
2012 (10)
2015 (8)
2014 (7)
2025 (6)
2016 (6)
2013 (6)
2011 (5)
2022 (5)
2024 (4)
2026 (4)
2020 (4)
2007 (4)
2006 (4)
2019 (3)
2017 (3)
2009 (3)
2008 (3)
2018 (3)
2005 (2)
2023 (2)

UNIPROT ID/AC

O81713 (1)
Q9LKL2 (1)

CHEBI ID

CHEBI:15741 (3)
CHEBI:15756 (3)
CHEBI:15963 (3)
CHEBI:16865 (3)
CHEBI:17568 (3)
CHEBI:17596 (3)
CHEBI:17992 (3)
CHEBI:28842 (3)
CHEBI:33508 (3)
CHEBI:48928 (3)
CHEBI:14314 (2)
CHEBI:15422 (2)
CHEBI:15725 (2)
CHEBI:15978 (2)
CHEBI:16199 (2)
CHEBI:16335 (2)
CHEBI:16704 (2)
CHEBI:16919 (2)
CHEBI:16958 (2)
CHEBI:17057 (2)
CHEBI:17148 (2)
CHEBI:17151 (2)
CHEBI:17154 (2)
CHEBI:17268 (2)
CHEBI:17497 (2)
CHEBI:17634 (2)
CHEBI:17716 (2)
CHEBI:17821 (2)
CHEBI:17822 (2)
CHEBI:33699 (1)

Metabolite Name

3-Hydroxybutyric acid (3)
1,3-Diaminopropane (2)
6-Phosphogluconic acid (2)
Adenosine (2)
Choline (2)
Citric acid (2)
Creatine (2)
Creatinine (2)
D-Glucose (2)
D-Mannose (2)
Glycine (2)
Inosine (2)
L-Alanine (2)
L-Arginine (2)
L-Glutamic acid (2)
L-Glutamine (2)
L-Histidine (2)
L-Isoleucine (2)
L-Lactic acid (2)
L-Leucine (2)
L-Lysine (2)
L-Phenylalanine (2)
L-Proline (2)
L-Threonine (2)
L-Tyrosine (2)
L-Valine (2)
Putrescine (2)
Succinic acid (2)
Sucrose (2)
Thymine (2)

IsPrivate

False (2)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (40)
RNA-seq of coding RNA (14)
Comparative genomic hybridization by array (6)
Methylation profiling by array (4)
ChIP-chip by array (3)
Other (2)
Methylation profiling by high throughput sequencing (2)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
Transcription profiling by tiling array (1)

Release Date

2025 (36)
2016 (31)
2021 (28)
2017 (28)
2024 (27)
2018 (26)
2015 (25)
2022 (25)
2014 (24)
2020 (21)
2019 (20)
2023 (19)
2010 (18)
2013 (16)
2012 (15)
2011 (12)
2026 (5)
2008 (5)
2009 (4)
2007 (4)
2006 (4)
2005 (2)

Lab affiliation

Cambridge Institute for Medical Research, Univeristy of Cambridge (1)
Cambridge Institute for Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge, UK (1)
Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge, Cambridge, UK (1)
Cambridge Institute of Therapeutic Immunology and Infectious Disease, Cambridge, UK (1)
Cambridge Institute of Therapeutic Immunology and Infectious Disease, Univeristy of Cambridge, UK (1)
Cambridge Institute of Therapeutic Immunology and Infectious Disease, University of Cambridge, UK (1)
Cambridge Institute of Therapeutic Immunology and Infectious Disease, Unveristy of Cambridge, UK (1)
Cambridge Institute of Therapeutic Immunology and Infectious Diseases, Department of Medicine, University of Cambridge, (1)
Centre for Proteomic Research, University of Southampton (1)
Division of Plant Sciences, University of Dundee (at the James HuttonInstitute), Errol Road, Invergowrie, Dundee DD2 5DA, UK (1)
Member Cell and Molecular Biology Department St. Jude Children's Research Hospital Memphis, TN-38105 (1)
Paul J Lehner PhD FRCP FMed Sci FRS Sheila Joan Smith Professor of Immunology Wellcome Principal Fellow and Honorary Consultant University of Cambridge CITIID Cambridge Biomedical Campus Cambridge CB2 0AW (1)
University of Arizona College of Medicine, Department of Medicine, Division of Endocrinology (1)
Wellcome Trust Principal Research Fellow Honorary Consultant Infectious Diseases Cambridge Institute of Therapeutic Immunology and Infectious Disease Jeffrey Cheah Biomedical Centre Univeristy of Cambridge (1)

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Efficacy of an mHealth intervention to support pain self-management and improve analgesia in patients with rib fractures: protocol for a randomised controlled trial.

Not available

S-EPMC11552598 | biostudies-literature

phytophthora infestans LC/MS/MS

The oomycete potato blight pathogen Phytophthora infestans secretes a diverse set of proteins to manipulate host plant immunity. However, there is limited knowledge about the role(s) of majority of these secreted proteins. Here we subjected extracellular proteins from in vitro cultured hyphae to LC/...

ORGANISM(S): Phytophthora infestans T30-4

2018-09-03 | PXD009802 | Pride

Phytophthora infestans culture filtrate

Phosphoproteomic analysis reveals enhanced PKA signaling in aged skeletal muscle is suppressed by caloric restriction

Although caloric restriction (CR) was first shown to extend the lifespan of rodents over 75 years ago, the underlying mechanisms remain unclear. Additionally, the majority of published studies have focused on the effects of short-term CR. To better understand cell signaling alterations in a tissue k...

ORGANISM(S): Mus Musculus (mouse)

2021-01-30 | PXD018455 | JPOST Repository

Expression of NRG1 and its receptors in human bladder cancer.

Not available

S-EPMC3068491 | biostudies-literature

An Alkane Sulfonate Monooxygenase Is Required for Symbiotic Nitrogen Fixation by Bradyrhizobium diazoefficiens (syn. Bradyrhizobium japonicum) USDA110T.

Not available

S-EPMC6881790 | biostudies-literature

eQTL mapping in multiple cell types in patients with active imune-mediated disease

Gene expression microarray profiling was performed on peripheral blood leukocyte subsets (CD4+ T cells, CD8+ T cells, CD14+ monocytes, CD16+ neutrophils, CD19+ B cells) from healthy controls, patients with flaring autoimmune disease, and in patients with autoimmune disease following treatment, eith...

ORGANISM(S): Homo sapiens

2016-02-25 | E-MTAB-3554 | biostudies-arrayexpress

QCAV-4, the first genetically modified Cavendish (cv. Grand Nain) banana resistant to Fusarium wilt tropical race 4 approved for commercial production and consumption.

Not available

S-EPMC12392930 | biostudies-literature

Enhancing care quality and accessibility through digital technology-supported decentralisation of hypertension and diabetes management: a proof-of-concept study in rural Bangladesh.

Not available

S-EPMC10660961 | biostudies-literature

Definitive results of a phase III adjuvant trial comparing three chemotherapy regimens in women with operable, node-positive breast cancer: the NSABP B-38 trial.

Not available

S-EPMC3757290 | biostudies-literature

Atomic-scale engineering of ferroelectric-ferromagnetic interfaces of epitaxial perovskite films for functional properties.