James S L SL - OmicsDI

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Transcriptomics (651)
Unknown (461)
Genomics (91)
Proteomics (16)
Metabolomics (6)

Organisms

Homo sapiens (346)
Mus musculus (147)
Bos taurus (25)
Rattus norvegicus (24)
Arabidopsis thaliana (17)
Escherichia coli (14)
Saccharomyces cerevisiae (13)
Salmo salar (12)
Euphorbia esula (9)
Caenorhabditis elegans (7)
Zea mays (5)
Danio rerio (5)
Macaca mulatta (4)
Yersinia pestis (4)
Daphnia magna (3)
Streptococcus agalactiae (3)
Streptococcus pneumoniae (3)
Oncorhynchus mykiss (3)
Pseudomonas aeruginosa PAO1 (3)
Sus scrofa (3)
Drosophila melanogaster (3)
Streptococcus uberis (2)
Salmonella enterica (2)
Bos indicus (2)
Equus caballus (2)
Lepidium sativum (2)
Aspergillus fumigatus (2)
Apis mellifera (2)
Schizosaccharomyces pombe (2)
Oryza sativa (2)

Repository

biostudies-arrayexpress (712)
EGA (32)
MassIVE (10)
MetaboLights (5)
pride (4)
GNPS (1)
jPOST (1)
PanoramaPublic (1)

Tissue

Blood plasma (1)
Blood platelet (1)
Epithelial cell (1)
Kidney (1)
Soleus (1)

Disease

Normal (4)
Chronic myeloid leukemia (3)
Severe acute respiratory syndrome (2)
HPV positive (1)
Large cell neuroendocrine carcinoma (1)
Myelogenous leukaemia (1)
Post-stasis (1)
Infected (1)
Alpha-1 antitrypsin deficiency (1)
Colon cancer metastasis (1)
Familial adenomatous polyposis (FAP) (1)
Unstable atherosclerotic plaque region (1)
Breast carcinoma (1)
Breast cancer (1)

Technology Type

Illumina 15K (8)
Mass spectrometry (4)
Mass Spectrometry (4)
Shotgun proteomics (2)
Illumina OmniQuad 2.5 - CNVpartition (1)
Illumina OncoArray (1)
Illumina_Infinium_HumanMethylation450, Illumina_HumanHT-12v4 (1)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Bottom-up proteomics (1)
Data-dependent acquisition (1)

Instrument Platform

Illumina HiSeq 2500 (19)
NextSeq 500 (12)
Illumina NovaSeq 6000 (11)
Illumina HiSeq 2000 (10)
Illumina HiSeq 4000 (8)
GenePix 4000B [Axon Instruments] (6)
Illumina MiSeq (3)
BD Influx sorter (2)
Agilent Bravo NGS workstation, Microlab STAR automated liquid handler (Hamilton Robotics), PCR machine (MJ Research Peltier Thermal Cycler) (2)
AB SOLiD 4 System (2)
Illumina Genome Analyzer IIx (2)
Scanning hardware (2)
NextSeq 550 (2)
Illumina HiSeq 3000 (2)
Hisat2 v2.0.5 (1)
DESeq (1)
Growthroom (1)
Illumina Novaseq platform (1)
Element AVITI (1)
Affymetrix GeneChip Scanner (1)
Illumina Genome Analyser II (1)
MACS (1)
Hybridized arrays (1)
Total RNA from honey bee brains (1)
Labeled RNA (1)
Honey bee (Apis mellifera) colony. (1)
Brains of infected and control honey bees (1)
White-eye pupae, purified DWV particles (1)
White eye pupae without manipulation. (1)
MoFlo XDP (Beckman Coulter) or a FACSAria II (Becton Dickinson) (1)

Publication Date

2010 (86)
2014 (83)
2012 (79)
2015 (78)
2013 (76)
2011 (74)
2008 (49)
2016 (45)
2009 (20)
2007 (20)
2018 (19)
2020 (17)
2006 (17)
2022 (14)
2017 (9)
2005 (9)
2025 (8)
2024 (8)
2023 (7)
2019 (6)
2021 (5)
2026 (4)
2004 (1)

CHEBI ID

CHEBI:1148 (2)
CHEBI:15891 (2)
CHEBI:15978 (2)
CHEBI:16015 (2)
CHEBI:16199 (2)
CHEBI:16411 (2)
CHEBI:16958 (2)
CHEBI:17015 (2)
CHEBI:17053 (2)
CHEBI:17126 (2)
CHEBI:17154 (2)
CHEBI:17268 (2)
CHEBI:17306 (2)
CHEBI:17368 (2)
CHEBI:17568 (2)
CHEBI:17992 (2)
CHEBI:18089 (2)
CHEBI:18183 (2)
CHEBI:20067 (2)
CHEBI:27226 (2)
CHEBI:27468 (2)
CHEBI:30769 (2)
CHEBI:30915 (2)
CHEBI:33508 (2)
CHEBI:4676 (2)
CHEBI:58148 (2)
CHEBI:59783 (2)
CHEBI:68567 (2)
CHEBI:70984 (2)
CHEBI:73004 (2)

Metabolite Name

2-Methylglutaric acid (2)
Ethylmalonic acid (2)
Glutaconic acid (2)
L-Lactic acid (2)
Propionylglycine (2)
Taurine (2)
(4R)-4-Hydroxy-L-glutamic acid (1)
(R)-3-Hydroxybutyric acid (1)
(S)-3-Hydroxybutyric acid (1)
(S)-3-Hydroxytetradecanoyl-CoA (1)
1,3-Diaminopropane (1)
1,3-dimethylurate (1)
1-(sn-Glycero-3-phospho)-1D-myo-inositol (1)
1-Methyl-L-histidine (1)
1-Methylhistamine (1)
1-Methylnicotinamide (1)
1-methylurate (1)
1-methylxanthine (1)
10-Heptadecanoate (1)
11-dehydrocorticosterone (1)
13-HODE (1)
16a-hydroxy DHEA 3-sulfate (1)
2,3-Dihydroxypropanoic acid (1)
2,3-Dihydroxypropyl hexopyranoside (1)
2,3-Diphospho-D-glyceric acid (1)
2,3-Pyridinedicarboxylic acid (1)
2,4-Dihydroxylamino-6-nitrotoluene (1)
2,5-Dihydroxybenzaldehyde (1)
2,5-Dihydroxybenzoic acid (1)
2-(Hydroxymethyl)butanoic acid (1)

Study type

Transcription profiling by array (434)
RNA-seq of coding RNA (103)
ChIP-seq (42)
Comparative genomic hybridization by array (17)
Unknown experiment type (14)
Methylation profiling by array (12)
Methylation profiling by high throughput sequencing (12)
Genotyping by array (10)
ChIP-chip by tiling array (9)
Other (8)
RNA-seq of coding RNA from single cells (8)
RNA-seq of non coding RNA (7)
ChIP-chip by array (6)
DNA-seq (5)
RNA-seq of total RNA (3)
Transcription profiling by SAGE (2)
Human - High-throughput sequencing (2)
Cell line - High-throughput sequencing (2)
Transcription profiling by tiling array (2)
ATAC-seq (2)
ChIP-chip by SNP array (1)
Animal - One-color microarray (1)
Translation profiling (1)
Whole chromosome random sequencing (1)
Animal - High-throughput sequencing (1)
Capture-C (1)
Transcription profiling by RT-PCR (1)
Spatial transcriptomics by high-throughput sequencing (1)
Bisulfite-seq (1)
Single nucleus RNA sequencing (1)

Release Date

2014 (98)
2010 (91)
2015 (90)
2011 (89)
2012 (86)
2013 (84)
2024 (60)
2021 (59)
2020 (59)
2016 (59)
2022 (55)
2025 (53)
2008 (51)
2023 (46)
2019 (37)
2018 (36)
2017 (35)
2009 (21)
2007 (20)
2026 (17)
2006 (17)
2005 (9)
2004 (1)

Lab affiliation

Centre de Recherche sur le Cancer, PROTEO et Département de Biologie Moléculaire, Biochimie Médicale et Pathologie, Université Laval, Division Oncologie, Centre de Recherche du Centre Hospitalier Universitaire (CHU) de Québec, Québec, Canada (1)
Charles Perkins Centre, University of Sydney, Australia (1)
Maynooth University Department of Biology Maynooth University, Maynooth, Co. Kildare, Ireland. (1)
University of Sydney (1)

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Transcriptional responses of Escherichia coli to GSNO under defined chemostat conditions.

Escherichia coli strain MG1655 was grown in a New Brunswick Scientific Bioflow III Biofermentor under continuous culture (chemostat) conditions. Cells were grown in defined media containing 54 mM glycerol as the sole and limiting source of energy and carbon. The working volume was 1 litre, and the d...

ORGANISM(S): Escherichia coli

2010-06-10 | E-GEOD-2095 | biostudies-arrayexpress

Setting research priorities for palliative and end-of-life care: a James Lind Alliance Priority Setting Partnership Refresh.

Not available

S-EPMC12911823 | biostudies-literature

Identification of regulators of polyploidization presents therapeutic targetsfor treatment of AMKL

Wen Q, Goldenson B, Silver SJ, Schenone M, Dancik V, Huang Z, Wang LZ, Lewis TA, An WF, Li X, Bray MA, Thiollier C, Diebold L, Gilles L, Vokes MS, Moore CB, Bliss-Moreau M, Verplank L, Tolliday NJ, Mishra R, Vemula S, Shi J, Wei L, Kapur R, Lopez CK, Gerby B, Ballerini P, Pflumio F, Gilliland DG, Go...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2014-01-27 | MSV000078536 | MassIVE

Transcription profiling of E.coli luxS mutants vs. W3110 wild type

The bacterial quorum-sensing autoinducer 2 (AI-2) has received intense interest because the gene for its synthase, luxS, is common among a large number of bacterial species. We have identified luxS-controlled genes in Escherichia coli under two different growth conditions using DNA microarrays. Twen...

ORGANISM(S): Escherichia coli

2008-06-16 | E-GEOD-9587 | biostudies-arrayexpress

Transcription profiling of E. coli K12 luxS-dependent gene regulation

ORGANISM(S): Escherichia coli

2008-06-16 | E-GEOD-9582 | biostudies-arrayexpress

Gene expression profiling after vaccination with the RTS,S candidate malaria vaccine in a controlled human malaria infection study

RTS,S is the sole candidate vaccine shown to provide protection against infection to malaria-naive adults challenged with mosquito-borne homologous falciparum malaria and protection against infection and clinical and severe disease to volunteers in malaria-endemic Africa who were exposed to diverse ...

ORGANISM(S): Homo sapiens

2017-04-27 | E-MTAB-4629 | biostudies-arrayexpress

Vincristine resistance reshapes sphingolipid composition and promotes mitochondrial complex I deficiency in acute myelogenous leukemia

Modifications in sphingolipid (SL) metabolism and mitochondrial bioenergetics are key factors implicated in cancer cell response to chemotherapy, including chemotherapy resistance. Vinca alkaloids such as vincristine (VCR), widely used in cancer treatment, are no exception, as their beneficial actio...

ORGANISM(S): Homo Sapiens (human)

2022-04-21 | PXD025645 | JPOST Repository

Aerobic transcriptional responses of Escherichia coli to NO under defined chemostat conditions.

Escherichia coli strain MG1655 was grown in a New Brunswick Scientific Bioflow III Biofermentor under continuous culture (chemostat) conditions. Cells were grown in defined media containing 8 mM glycerol as the sole and limiting source of energy and carbon. The working volume was 1 litre, and the ...

ORGANISM(S): Escherichia coli

2010-07-01 | E-GEOD-5075 | biostudies-arrayexpress

Glycine max Transcriptome or Gene expression

Soybean (Glycine max, cv Williams82) leaf petiole explants exposed to 25 ul/l ethylene for 0 to 72 h. Explants were prepared from 21 day-old greenhouse grown plants. Leaf abscission zones (LAZ) consisted of 2 mm of tissue collected below the leaf blade. The petioles (NAZ) consisted of approximately ...

ORGANISM(S): Glycine max

2015-02-06 | E-MTAB-5066 | biostudies-arrayexpress

Optimised LC-MS Metabolomic Profiling Reveals Emergent Changes to Monocyte Metabolism in Response to Lipopolysaccharide

Immunometabolism examines the links between immune cell function and metabolism. Dysregulation of immune cell metabolism is now an established feature of innate immune cell activation. Advances in liquid chromatography mass spectrometry (LC-MS) technologies have allowed discovery of unique insights ...

2025-11-17 | MTBLS6730 | MetaboLights

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1227 Results

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