Jang A A - OmicsDI

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Unknown (9283)
Proteomics (137)
Transcriptomics (104)
Genomics (39)
Metabolomics (10)
Models (6)

Organisms

Homo sapiens (150)
Mus musculus (65)
Arabidopsis thaliana (14)
Rattus norvegicus (6)
Bos taurus (3)
Oryza sativa (3)
Panax ginseng (3)
Severe acute respiratory syndrome coronavirus 2 (3)
Oryza sativa Japonica Group (2)
Sus scrofa domesticus (2)
Burkholderia glumae (1)
Citrullus lanatus (1)
Vibrio vulnificus (1)
Chlorocebus sabaeus (1)
Staphylococcus aureus (1)
Triticum aestivum (1)
Pseudomonas aeruginosa (1)
Sus scrofa (1)
Drosophila melanogaster (1)
Chlorocebus aethiops (1)
Escherichia coli (1)
Glycine max (1)
West Nile virus (1)
Xanthomonas oryzae pv. oryzae KACC 10331 (1)

Organisms

Homo sapiens (3)
Magnolia champaca (1)
Stevia rebaudiana (1)
Lactiplantibacillus plantarum (1)

Repository

pride (125)
biostudies-arrayexpress (110)
EGA (26)
MassIVE (11)
BioModels (6)
MetaboLights (6)
ENA (6)
GNPS (4)
geo (2)

Tissue

Cell culture (32)
Brain (17)
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Permanent cell line cell (7)
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Cerebrospinal fluid (4)
Blood cell (3)
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Blood plasma (2)
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Embryo (2)
HeLa cell (2)
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Adrenal cortex (1)
Astrocyte (1)
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Blood (1)
Central nervous system neuron (1)
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MEF cell (1)
T cell (1)

Disease

Disease free (6)
Alzheimer's disease (3)
COVID-19 (3)
Parkinson's disease (3)
Autism spectrum disorder (2)
Colon cancer (2)
Pancreatic cancer (2)
Pancreatic intraductal papillary-mucinous neoplasm (2)
Hepatocellular carcinoma-non tumorous region (1)
Acute leukemia (1)
Adrenal cortical adenocarcinoma (1)
Brain glioblastoma multiforme (1)
Breast cancer (1)
Congenital heart disease (1)
Coronavirus infectious disease (1)
Dementia (1)
Duchenne muscular dystrophy (1)
Heart disease (1)
Huntington Disease (1)
Lung cancer (1)
Mild cognitive impairment (1)
Multiple sclerosis (1)
Neurilemmomatosis (1)
Neurodegenerative disease (1)
Neurodevelopmental abnormality (1)
Noonan syndrome (1)
Progressive supranuclear palsy (1)
Prostate adenocarcinoma (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (125)
Shotgun proteomics (68)
Affinity purification coupled with mass spectrometry proteomics (19)
Bottom-up proteomics (16)
Data-dependent acquisition (14)
Top-down proteomics (10)
Mass spectrometry (4)
Data-independent acquisition (4)
Gel-based experiment (4)
SWATH MS (4)
Mass spectrometry assay (2)
All-ion fragmentation (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Immunopeptidomics (1)
SRM/MRM (1)

Instrument Platform

Q Exactive Plus (4)
Illumina NovaSeq 6000 (3)
Illumina HiSeq 2000 (3)
Liquid Chromatography MS - negative - hilic (3)
LTQ Orbitrap Elite (2)
Q Exactive (2)
Liquid Chromatography MS - positive - hilic (2)
Element AVITI (1)
PCR machine; AMPure XP beads; TruSeq Stranded mRNA stranded prep. kit (1)
PCR machine; Superscript II polymerase Kit (Invitrogen); PCR machine; AMPure XP beads; TruSeq stranded mRNA sample prep kit.; TruSeq Stranded mRNA stranded prep. kit (1)
Centrifuge 5424R (Eppendorf); miRNeasy Mini Kit (Qiagen); TURBO^TM DNase (Ambion); Bioanalyser (Agilent) (1)
Centrifuge 5424R (Eppendorf); RNAprotect Bacteria Reagent (Qiagen); Cell culture dish (Nunc) (1)
Centrifuge 5424R (Eppendorf); RNAprotect Bacteria Reagent (Qiagen) (1)
PCR machine; MICROBExpress kit (Ambion); TruSeq Stranded mRNA stranded prep. kit (1)
PCR machine; AMPure XP beads; TruSeq stranded mRNA sample prep. kit. (1)
Illumina Genome Analyzer IIx (1)
NA (1)
- (1)
ACQUITY UPLC H-Class (1)
TripleTOF 5600 (1)
Exactive Plus (1)
LTQ FT (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)
TimsTOF (1)
Vion IMS QTof (1)
Direct infusion MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2024 (31)
2026 (24)
2025 (19)
2012 (18)
2014 (17)
2021 (17)
2023 (17)
2015 (16)
2008 (14)
2022 (14)
2013 (13)
2019 (11)
2011 (9)
2020 (9)
2017 (7)
2016 (7)
2010 (6)
2009 (6)
2018 (6)
2007 (1)

UNIPROT ID/AC

B5MCZ3 (1)
Q0GK43 (1)
Q14609 (1)
Q49IL8 (1)

CHEBI ID

CHEBI:15354 (2)
CHEBI:15422 (2)
CHEBI:15428 (2)
CHEBI:15698 (2)
CHEBI:16113 (2)
CHEBI:16238 (2)
CHEBI:16450 (2)
CHEBI:16732 (2)
CHEBI:16919 (2)
CHEBI:17050 (2)
CHEBI:17562 (2)
CHEBI:18107 (2)
CHEBI:18132 (2)
CHEBI:10072 (1)
CHEBI:113542 (1)
CHEBI:131536 (1)
CHEBI:131540 (1)
CHEBI:132002 (1)
CHEBI:132004 (1)
CHEBI:132032 (1)
CHEBI:132033 (1)
CHEBI:132034 (1)
CHEBI:132035 (1)
CHEBI:132036 (1)
CHEBI:132037 (1)
CHEBI:132038 (1)
CHEBI:132039 (1)
CHEBI:132223 (1)
CHEBI:132689 (1)
CHEBI:132780 (1)

Metabolite Name

2'-deoxycytidine (2)
2'-deoxyuridine (2)
ATP (2)
CDP-ethanolamine (2)
Choline (2)
Creatine (2)
Cytidine (2)
FAD (2)
Glycine (2)
Phosphocholine (2)
Xanthosine (2)
(2S)-2-isopropylmalic acid (1)
(3S)-3-hydroxy-3-methylglutaryl-CoA (1)
(R)-3-hydroxybutyrylcarnitine (1)
(R)-pantothenic acid (1)
(S)-dihydroorotic acid (1)
(S)-lactic acid (1)
(S)-malic acid (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-palmitoleoyl-GPC (P-16:0/16:1) (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0) (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0) (1)
1-(1-enyl-stearoyl)-GPE (P-18:0) (1)
1-arachidonoyl-GPI (20:4) (1)
1-methyladenosine (1)
1-methylnicotinamide (1)
1-myristoyl-2-palmitoyl-GPC (14:0/16:0) (1)
1-oleoyl-GPI (18:1) (1)
1-palmitoyl-2-docosahexaenoyl-GPE (16:0/22:6) (1)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (1)

First Public Date

2014 (2)
2020 (1)
2019 (1)
2017 (1)
2015 (1)

Modelling Approach

Ordinary differential equation model (5)
Other (1)

Lab affiliation

IBS, KAIST (4)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (4)
Molecular Biosciences and the Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, TX USA (3)
The Wilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287 USA (3)
UCSF (3)
BCMP, Harvard Medical School, Boston, USA Cancer Biology, Dana-Farber Cancer Institute, Boston, USA (2)
Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA (2)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (2)
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, 50463, Republic of Korea (2)
Department of Plant Bioscience, Pusan National University, Miryang 50463, South Korea (2)
Korea Brain Research Institute (2)
Korea Brain Research Institute, Daegu, 41068, Korea (2)
Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP) (2)
Pohang University of Science and Technology (2)
Proteomics and Metabolomics Core Facility, Biomedical Research Institute, Seoul National University Hospital (2)
1 Department of Genetics, Harvard Medical School, Boston, MA 02115 (1)
1. Bioanalytical Mass Spectrometry Group, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany 2. Bioanalytics, University Medical Center, Robert-Koch-Straße 40, 37075 Göttingen, Germany (1)
1. Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA, USA. 2. Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, USA. (1)
1CHU Sainte-Justine Research Center, Montreal, QC H3T 1C5, Canada 2 Department of Pathology and cellular biology, Faculty of Medicine, Universite de Montreal, QC H3T 1J4, Canada (1)
1Department of Pharmacology, University of Colorado School of Medicine, Aurora, CO 80045, USA (1)
1Korea Brain Research Institute (1)
2Department of Biological Sciences, Korea Advanced Institute for Science and Technology (KAIST) (1)
2Proteome Exploration Laboratory, Beckman Institute, California Institute of Technology, Pasadena, CA 91125 (1)
Aging Institute, University of Pittsburgh School of Medicine/UPMC (1)
Assistant Professor of Neurology Institute for Cell Engineering Johns Hopkins University School of Medicine (1)
Assistant professor, School of Biological Sciences, Seoul National University (1)
Associate Professor, Department of Neurology, Yale University School of Medicine (1)
Associate professor, School of Biological Sciences, Seoul National University (1)
Ben May Department for Cancer Research, The University of Chicago (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada (1)

IsPrivate

False (6)

Submitter Keywords

Immuno-oncology (4)
Machine Learning Model (1)

Modification

-17.026549 (1)
-18.010565 (1)
15.994915 (1)

Study type

Transcription profiling by array (70)
RNA-seq of coding RNA (19)
ChIP-seq (5)
ChIP-chip by tiling array (4)
Comparative genomic hybridization by array (4)
Transcription profiling by tiling array (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
Proteomic profiling by array (1)
CUT&RUN (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (1117)
2022 (1100)
2021 (1072)
2023 (1036)
2024 (1029)
2020 (811)
2019 (582)
2018 (501)
2017 (477)
2016 (356)
2015 (319)
2014 (223)
2026 (175)
2013 (147)
2012 (108)
2011 (88)
2010 (62)
2008 (61)
2009 (42)
2007 (29)
2006 (14)
2005 (13)
2004 (9)
2002 (6)
2000 (4)
2003 (3)
2001 (3)
1999 (2)
1998 (1)

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A low protein diet drives short and long-term improvements in metabolic health in a mouse model of sleeve gastrectomy

Despite the largely beneficial impact of bariatric surgery on obesity and metabolic disease, many patients continue to suffer from obesity after surgery and weight recurrence is common. The success of bariatric surgery may be impacted by diet. While bariatric surgery guidelines recommend a high-p...

2025-10-13 | MTBLS13046 | MetaboLights

Examining the effects of cigarette smoke on mouse lens through a multi OMIC approach

Here, we report a multi OMIC (transcriptome, proteome, and metabolome) approach to investigate molecular changes in lens fiber cells (FC) of mice exposed to cigarette smoke (CS). Pregnant mice were placed in a whole-body smoke chamber and a few days later pups were born, which were exposed to CS for...

2024-03-24 | MTBLS207 | MetaboLights

Early intervention with Kan Jang® to treat upper-respiratory tract infections: A randomized, quadruple-blind study.

Not available

S-EPMC8572720 | biostudies-literature

Efficacy of Kan Jang^® in Patients with Mild COVID-19: A Randomized, Quadruple-Blind, Placebo-Controlled Trial.

Not available

S-EPMC10535596 | biostudies-literature

Efficacy of Kan Jang^® in Patients with Mild COVID-19: Interim Analysis of a Randomized, Quadruple-Blind, Placebo-Controlled Trial.

Not available

S-EPMC9415141 | biostudies-literature

Chip-chip from C-33 cells expressing FLAG-HPV1 E2 with FLAG-HPV1 E2

HPV1 E2 binds with Brd4 to host mitotic chromosomes. To identify the targets, chromatin was prepared from mitotic C-33 cells expressing HPV1 E2, and analyzed by ChIP-chip analysis for binding to a portion of the human genome. E2 and Brd4 bind to active promoters in interphase C-33 cells (Jang et al....

ORGANISM(S): Homo sapiens

2014-04-14 | E-GEOD-52312 | biostudies-arrayexpress

Array-Based Screening of Silver Nanoparticle Mineralization Peptides.

Not available

S-EPMC7178033 | biostudies-literature

Complete Genome Sequence of Bacillus subtilis Strain DKU_NT_03, Isolated from a Traditional Korean Food Using Soybean (Chung-gook-jang) for High-Quality Nattokinase Activity.

Not available

S-EPMC6013627 | biostudies-literature

Effects of Mechanical Refining on Anaerobic Digestion of Dairy Manure.

Not available

S-EPMC8264835 | biostudies-literature

Characterization of a forest soil metagenome clone that confers indirubin and indigo production on Escherichia coli.