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TranscriptomicsCROP-seq of 2 month old brain organoids
To investigate the influence of transcription factor knockouts in cell fate decision-making, we performed a CROP-seq screen of 20 transcription factors in brain organoids.
ORGANISM(S): Homo sapiens 
2022-08-18 | E-MTAB-11999 | biostudies-arrayexpress
TranscriptomicsscRNA-seq of early brain organoid development from pluripotency
To study developmental trajectories in brain organoids, we conducted scRNA-seq and scATAC-seq in parallel on a dense timecourse of early development.
ORGANISM(S): Homo sapiens 
2022-08-18 | E-MTAB-12001 | biostudies-arrayexpress
TranscriptomicsscRNA-seq data from GLI3 KO in brain organoids
To study the effect of GLI3 knockout in brain organoids, we collected scRNA-seq data from 45 day old brain organoids with GLI3 KO
ORGANISM(S): Homo sapiens 
2022-08-19 | E-MTAB-11997 | biostudies-arrayexpress
TranscriptomicsAmplicon sequencing data from CROP-seq in 2 month old organoids
To better detect CROP-seq mRNAs in our CROP-seq experiment, we performed amplicon sequencing on the 10X single-cell cDNA libraries
ORGANISM(S): Homo sapiens 
2022-08-15 | E-MTAB-12005 | biostudies-arrayexpress
TranscriptomicsscATAC-seq of early brain organoid development from pluripotency
To study developmental trajectories in brain organoids, we conducted scRNA-seq and scATAC-seq in parallel on a dense timecourse of early development.
ORGANISM(S): Homo sapiens 
2022-08-18 | E-MTAB-11998 | biostudies-arrayexpress
GenomicsCut&Tag of GLI3 binding during early organoid development
To investigate GLI3 TF targets during organoid fate decisions, we performed Cut&Tag of GLI3 binding
ORGANISM(S): Homo sapiens 
2022-08-28 | E-MTAB-12006 | biostudies-arrayexpress
TranscriptomicsMultiome scRNA- and scATAC-seq for SHH treated brain organoids
To investigate how SHH treatment influences patterning of early brain organoids, we performed multiome sequencing of brain organoids during early development
ORGANISM(S): Homo sapiens 
2022-09-01 | E-MTAB-12003 | biostudies-arrayexpress
TranscriptomicsMultiome experiment from GLI3 KO brain organoids
To study the effect of GLI3 knockout on early brain organoid development, we collected single-cell multiome data from 18 day old brain organoids
ORGANISM(S): Homo sapiens 
2022-08-25 | E-MTAB-12002 | biostudies-arrayexpress
TranscriptomicsMultiome experiment of the neuroepithelial stage of brain organoid developement
To investigate the heterogeneity during the neuroepithelial stage of organoid development, we performed a multiome experiment on day 15-18 old brain organoids
ORGANISM(S): Homo sapiens 
2022-10-03 | E-MTAB-12004 | biostudies-arrayexpress
UnknownMorphological and Molecular Evidence Reveals the Longnose Skate Zearaja brevicaudata (Marini, 1933) to be a Senior Synonym of Dipturus lamillai Concha, Caira, Ebert & Pompert 2019.
Not available
S-EPMC10061210 | biostudies-literature
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