Jensen O N ON - OmicsDI

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Unknown (542)
Transcriptomics (81)
Proteomics (42)
Genomics (35)
Metabolomics (10)
Other (1)

Organisms

Andropogon gerardi (37)
Bacteria (37)
Canis lupus familiaris (37)
Clavibacter nebraskensis NCPPB 2581 (37)
Cnidaria (37)
Ensifer adhaerens (37)
Fasciola (37)
Human alphaherpesvirus 1 strain 17 (37)
Homo sapiens (35)
Caenorhabditis elegans (22)
Plasmodium falciparum (15)
Mus musculus (10)
Pimephales promelas (7)
Sus scrofa (4)
Saccharomyces cerevisiae (3)
Mycobacterium tuberculosis (2)
Salmo salar (2)
Bos taurus (2)
Drosophila melanogaster (2)
Escherichia coli UTI89 (1)
Escherichia coli BW25113 (1)
Bos indicus (1)
Plasmodium falciparum 3D7 (1)
Trypanosoma brucei (1)
Pseudomonas aeruginosa UCBPP-PA14 (1)
Pseudomonas aeruginosa (1)
Plasmodium falciparum 7G8 (1)
Rattus norvegicus (1)
Danio rerio (1)
Eremophila rugosa (1)

Repository

biostudies-arrayexpress (110)
pride (37)
MetaboLights (9)
EGA (6)
MassIVE (5)
GNPS (1)
GPMDB (1)

Tissue

Cell culture (8)
Epithelial cell (5)
Blood plasma (2)
Cerebrospinal fluid (2)
Hepatocyte (2)
Permanent cell line cell (2)
Sperm (2)
Spermatozoon (2)
Blood cancer cell (1)
Blood platelet (1)
Bone cancer cell line (1)
Bone matrix (1)
Brain (1)
Brain cancer cell line (1)
Breast cancer cell (1)
Breast cancer cell line (1)
Cecum cancer cell line (1)
Cervical cancer cell line (1)
Colonic cancer cell (1)
Colorectal cancer cell line (1)
Dental plaque (1)
Egg (1)
Embryo (1)
Kidney (1)
Kidney cancer cell (1)
Liver (1)
Liver cancer cell (1)
Lung (1)
Lymph node (1)
Mammary gland epithelial cell (1)

Disease

Breast cancer (4)
Infiltrating ductal carcinoma (2)
Normal (2)
Colon cancer (2)
Infertility (2)
Phyllodes tumor (1)
Post-stasis (1)
Malaria (1)
Mastitis (1)
Not Available (1)
Alzheimer's disease (1)
Brain cancer (1)
Disease free (1)
Infantile hypotonia with psychomotor retardation and characteristic facies-3 (1)
Lung adenocarcinoma (1)
Malignant neoplasm of ovary (1)
Pancreatic cancer (1)
Parkinson's disease (1)
Prostate adenocarcinoma (1)

Technology Type

Mass Spectrometry (37)
Shotgun proteomics (19)
Mass spectrometry (8)
Bottom-up proteomics (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Gel-based experiment (5)
SWATH MS (5)
Data-dependent acquisition (3)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Mass spectrometry assay (1)
All-ion fragmentation (1)
Data-independent acquisition (1)
SRM/MRM (1)
Sodium dodecyl sulfate polyacrylamide gel electrophoresis (1)

Instrument Platform

NextSeq 500 (7)
Liquid Chromatography MS - positive - reverse phase (6)
GenePix 4000B [Axon Instruments] (3)
Illumina NovaSeq 6000 (3)
Illumina HiSeq 4000 (2)
LTQ (2)
DNBSEQ G40 (1)
Illumina DNA Prep sample preparation kits (Illumina Inc., San Diego, CA, USA). Final libraries concentrations and size were assessed with Quant-IT DNA Assay Kit and Agilent 4200 Tapestation System (Agilent Technologies, Milan, Italy), (1)
QIAamp DNA minikit, Qiagen, Germany (1)
BD FACSAria Fusion (1)
Element AVITI (1)
PromethION (1)
Computerome (1)
ScanArray 5000 [PerkinElmer] (1)
GenePix 4000A [Axon Instruments] (1)
Scanning hardware (1)
None (1)
DNBSEQ-G400 (1)
Illumina MiSeq (1)
Illumina HiSeq 1500 (1)
Illumina HiSeq 2000 (1)
MicrOTOF II (1)
Instrument (1)
LTQ Orbitrap Velos (1)
Orbitrap Eclipse (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
Q Exactive HF (1)
6460 Triple Quadrupole LC/MS (Agilent) (1)
5975C Series GC/MSD (Agilent) (1)

Publication Date

2011 (28)
2022 (16)
2023 (10)
2020 (10)
2014 (10)
2015 (9)
2013 (8)
2012 (8)
2010 (8)
2006 (7)
2009 (6)
2008 (6)
2026 (5)
2025 (5)
2019 (5)
2021 (5)
2016 (4)
2024 (4)
2017 (3)
2018 (2)
2007 (2)
2005 (1)

CHEBI ID

CHEBI:35038 (3)
CHEBI:16359 (3)
CHEBI:15603 (3)
CHEBI:28865 (3)
CHEBI:195271 (2)
CHEBI:143757 (2)
CHEBI:143745 (2)
CHEBI:182784 (2)
CHEBI:173703 (2)
CHEBI:139138 (2)
CHEBI:48430 (2)
CHEBI:73858 (2)
CHEBI:17924 (2)
CHEBI:34494 (2)
CHEBI:16610 (2)
CHEBI:22660 (2)
CHEBI:17376 (2)
CHEBI:17561 (2)
CHEBI:35932 (2)
CHEBI:16113 (2)
CHEBI:17202 (2)
CHEBI:16811 (2)
CHEBI:80774 (2)
CHEBI:29016 (2)
CHEBI:75342 (2)
CHEBI:16695 (2)
CHEBI:16708 (2)
CHEBI:16015 (2)
CHEBI:34687 (2)
CHEBI:27997 (2)

Metabolite Name

Tris(2-butoxyethyl) phosphate (3)
Cholic acid (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Lyso-PC(16:0) (2)
Dibutyl phthalate (DBP) (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
IMP (2)
Taurocholic acid (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
Spermidine (2)
Cholesterol (2)
Monoolein (2)
Elaidic acid (2)
9(10)-EpOME (2)
NCGC00168953-02_C47H76O17_(3beta,5xi,9xi,22beta)-22,24-Dihydroxyolean-12-en-3-yl 6-deoxy-alpha-L-mannopyranosyl-(1->2)-alpha-L-arabinopyranosyl-(1->2)-beta-D-glucopyranosiduronic acid (1)
Sodium taurochenodeoxycholate (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
Lyso PC (22:6) (1)
Methyl (3R,4R,5R)-5-[(2R,3R,4S,5S,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(E)-3-phenylprop-2-enoyl]oxyoxan-2-yl]oxy-3,4-dihydroxycyclohexene-1-carboxylate (1)
Propanoic acid, 3,3'-thiobis-, didodecyl ester (1)
2-((R)-4-((3R,5S,7S,8R,9S,10S,13R,14S,17R)-3,7-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanamido)ethane-1-sulfonic acid (1)
LU052302 Acetyl tributyl citrate|tributyl 2-acetyloxypropane-1,2,3-tricarboxylate (1)
9-Octadecenamide, (Z)- (1)
Ethanol, 2-(2-butoxyethoxy)- (1)
Alpha-TOCHOPHERYL ACETATE (1)
9S-Hydroxy-10E,12Z,15Z-octadecatrienoic acid (1)

Modification

15.994915 (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)

Study type

Transcription profiling by array (52)
ChIP-seq (24)
RNA-seq of coding RNA (8)
Methylation profiling by array (5)
DNA-seq (4)
Cell line - High-throughput sequencing (2)
Transcription profiling by tiling array (2)
ChIP-chip by array (2)
Comparative genomic hybridization by array (2)
RNA-seq of coding RNA from single cells (2)
Human - One-color microarray (1)
Transcription profiling by RT-PCR (1)
Spatial transcriptomics by high-throughput sequencing (1)
Other (1)
Single nucleus RNA sequencing (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (71)
2021 (65)
2024 (62)
2023 (51)
2020 (46)
2025 (39)
2011 (39)
2015 (34)
2016 (30)
2019 (29)
2014 (29)
2018 (28)
2017 (25)
2013 (25)
2012 (19)
2010 (14)
2008 (13)
2009 (10)
2006 (8)
2026 (5)
2007 (4)
2005 (4)
2000 (1)
1998 (1)

Lab affiliation

School of Life Science, Fudan University (2)
Anders H. Lund Professor, PhD Biotech Research and Innovation Centre University of Copenhagen Ole Maaloes Vej 5 DK-2200 N Copenhagen Denmark (1)
Bioanalytical Mass Spectrometry Group, Max Planck Institute for Multidisciplinary Sciences, Am Fassberg 11, 37077 Goettingen, Germany (1)
Centre de Recherches en Cancérologie de Toulouse; INSERM U1037, team 17 PI3K isoforms, signalling and cancerogenesis (1)
Cornell University Department of Microbiology (1)
Department of Biochemistry and Molecular Biology, Universitat de València, 46100 Burjassot, Spain (1)
Department of Biochemistry and Molecular Biology, VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Campusvej 55, DK - 5230 Odense M, Denmark(lab head) (1)
Department of Chemistry, Lomonosov Moscow State University, Leninskye Gory 1, 119991 Moscow, Russia (1)
Department of Proteomics and Signal Transduction Max Planck Institute of Biochemistry Germany (1)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany NNF Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark (1)
Department of Proteomics and Signal Transduction, Max-Planck Institute of Biochemistry, Martinsried, Germany (1)
Department of Urology, Department of Biochemistry and Molecular Biology, Cancer Research Institute, SUNY Upstate Medical University, 750 E. Adams St., Syracuse, NY 13210, USA (1)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) (1)
Fudan university (1)
Fundacion Instituto de Investigaciones Sanitarias de Santiago de Compostela (1)
GLOBE Institute, University of Copenhagen (Denmark) (1)
Group leader, Professor Novo Nordisk Foundation Center for Protein Research University of Copenhagen Faculty of Health and Medical Sciences (1)
Hannover Medical School Institute for Clinical Biochemistry (OE 4340) Carl-Neuberg-Strasse 1 Building J03, Level 04, Room 1291 (Office), Room 1250 (Lab) 30625 Hannover (1)
Hans Merensky Chair in Avocado Research, Department of Biochemistry, Genetics and Microbiology, Faculty of Natural and Agricultural Sciences, Forestry and Agricultural Biotechnology Institute, University of Pretoria, Pretoria 0028, South Africa (1)
IRCCS Istituto G Gaslini (1)
Institute of Biomedicine (iBiMED) and Department of Medical Sciences (DCM), University of Aveiro, Aveiro, Portugal. Multidisciplinary Institute of Ageing (MIA-Portugal), University of Coimbra, Coimbra, Portugal. (1)
Institute of Marine Research, Austevoll Research Station, 5392, Storebo Norway (1)
Instituto de Ciencia y Tecnologia Animal Universitat Politècnica de València (UPV) Valencia (Spain) (1)
Instituto de Ciencia y Tecnologia Animal Universitat Politècnica de València Valencia, Spain (1)
Job title:Professor Department:Institut for Biokemi og Molekylær Biologi Company:Syddansk Universitet Location: Odense, Denmark (1)
Lab of Proteome Research, Department of Molecular Biology and Genetics, Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia (1)
Mass Spectrometry & Proteomics Core Facility (MSPCF) Institute for Research in Biomedicine (IRB Barcelona) Barcelona Institute of Science and Technology (BIST) C/ Baldiri Reixac, 10-12 08028 Barcelona - Spain. (1)
Novo Nordisk Foundation Center for Protein Research Proteomics Program University of Copenhagen (1)
Population genetics (1)
Proteomics Unit at the University of Bergen, Department of Biomedicine, University of Bergen (1)

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Gyrodactylus triglopsi n. sp. (Monogenea: Gyrodactylidae) from the Gills of Triglops nybelini Jensen, 1944 (Teleostei: Cottidae) in the Barents Sea.

Not available

S-EPMC7427704 | biostudies-literature

Effects of Canavanine on Human Glioblastoma Cells under Arginine Deprivation

We investigated the effect of canavanine (toxic Arg analogue) treatment on U251MG and U87MG cell lines using a variety of methods including proteomics. Since 3rd isotope of unmodified peptide cannot be resolved from canavanine containing peptide even at extremely high resolutions of 480K we incorpor...

ORGANISM(S): Homo sapiens (Human)

2020-10-19 | PXD019044 | Pride

Changes in urinary excretion of water and sodium transporters during amiloride and bendroflumethiazide treatment.

Not available

S-EPMC4491934 | biostudies-literature

Development of a species-specific TaqMan-MGB real-time PCR assay to quantify Olsenella scatoligenes in pigs offered a chicory root-based diet.

Not available

S-EPMC6004268 | biostudies-literature

Global mass spectrometry and transcriptomics array based drug profiling provides novel insight into glucosamine induced ER stress.

Data from ProteomeXchange, PXD ID: PXD000380. Experiment: Treatment, file: MS12236QE_rune_henrik_Treatment_c.mzml. Published as part of Mol Cell Proteomics. 2014 Aug 15 . From the Abstract: {{i}} We investigated the molecular effects of glucosamine supplements, a popular and safe alternative to non...

ORGANISM(S): Homo_sapiens_viruses, Human

GPM32310003280 | GPMDB

Resource Reanalysis

A high-throughput O-glycopeptide discovery platform for seromic profiling.

Not available

S-EPMC3001163 | biostudies-literature

Global mass spectrometry and transcriptomics array based drug profiling provides novel insight into glucosamine induced endoplasmic reticulum stress.

Not available

S-EPMC4256484 | biostudies-literature

Effects of a short-term exposure to the fungicide prochloraz on endocrine function and gene expression in female fathead minnows (Pimephales promelas)

Prochloraz is a fungicide known to cause endocrine disruption through effects on the hypothalamic-pituitary-gonadal (HPG) axis. To determine the short-term impacts of prochloraz on gene expression and steroid production, adult female fathead minnows (Pimephales promelas) were exposed to the chemical...

ORGANISM(S): Pimephales promelas

2011-02-03 | E-GEOD-26958 | biostudies-arrayexpress

Single Cell RNA-Seq of Ear Epithelial Cells from i) steady state C57BL6/N & Tcrd-GDL mice, ii) untreated and TPA-treated C57BL6/J mice, and iii) IL13Ra1-knockdown CD1 mice

This dataset contains three experiments, designed for interrogating the effect of DETC on epithelial keratinocytes: Dataset 1) steady state ear epithelial cells (live, CD45-) from C57BL6/N (n=3) and Tcrd-GDL (n=3), after DETC deletion. Dataset 2) untreated and topical TPA-treated ear epithelial ce...

ORGANISM(S): Mus musculus

2022-12-31 | E-MTAB-10441 | biostudies-arrayexpress

Nitrogen-regulated genes in Fusarium fujikuroi

Genome-wide search for AreA-dependent and -independent nitrogen-regulated genes in Fusarium fujikuroi by cross-species hybridization with F. verticillioides microarrays. Keywords: glutamine treatmet Compare expression of genes of Fusarium fujikuroi wild-type and areA mutant strains responding to ni...

ORGANISM(S): Gibberella fujikuroi

2010-05-15 | E-GEOD-10692 | biostudies-arrayexpress

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