Jia Yuan Y - OmicsDI

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Unknown (895)
Proteomics (35)
Metabolomics (9)
Transcriptomics (7)
Models (1)
Genomics (1)

Organisms

Homo sapiens (14)
Schizophyllum commune H4-8 (12)
Mycobacterium tuberculosis SP7 (12)
Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 (12)
Oryza sativa Japonica Group (12)
Rabbit calicivirus (12)
Crotalus durissus terrificus (12)
Eriocheir sinensis (12)
Candidatus Endoriftia persephonae (12)
Mycobacterium tuberculosis SP10 (12)
Mycobacterium tuberculosis SP13 (12)
Cotesia typhae (12)
Mycobacterium tuberculosis SP22 (12)
Cepaea nemoralis (12)
Enterobacter ludwigii (12)
Trichoderma asperellum CBS 433.97 (12)
Corynebacterium diphtheriae bv. mitis str. ISS 3319 (12)
Nakaseomyces glabratus (12)
Olea europaea (12)
Chlamydomonas reinhardtii (12)
Lama (12)
Planorbella pilsbryi (12)
Danio rerio (6)
Mus musculus (5)
Drosophila melanogaster (2)
cellular organisms (1)
Oryza sativa (1)
Diaphorina citri (1)
Periplaneta americana (1)
Cucumis sativus (1)

Repository

iProX (20)
pride (12)
MetaboLights (9)
biostudies-arrayexpress (7)
MassIVE (2)
BioModels (1)
EGA (1)
jPOST (1)

Tissue

Cell culture (7)
Brain (2)
Hepatocyte (2)
Neuroblastoma cell (1)
Blood plasma (1)
Epithelial cell (1)
Macrophage (1)

Disease

Disease free (1)
Mixed disorder as reaction to stress (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (12)
Mass spectrometry (8)
Shotgun proteomics (5)
Bottom-up proteomics (3)
Data-dependent acquisition (2)
Data-independent acquisition (2)
Mass spectrometry assay (1)
DiaPASEF (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - positive - hilic (3)
Liquid Chromatography MS - negative - hilic (2)
Q Exactive Plus (1)
Q Exactive (1)
Liquid Chromatography MS - Negative (LC-MS (NEG)) (1)
Liquid Chromatography MS - Positive (LC-MS (POS)) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - negative (1)

Publication Date

2024 (10)
2026 (6)
2021 (6)
2023 (5)
2022 (5)
2025 (4)
2017 (3)
2015 (3)
2019 (3)
2014 (2)
2020 (2)
2018 (2)
2013 (1)

CHEBI ID

CHEBI:17895 (6)
CHEBI:17405 (5)
CHEBI:16828 (5)
CHEBI:16467 (5)
CHEBI:28875 (5)
CHEBI:16525 (4)
CHEBI:17490 (4)
CHEBI:16450 (4)
CHEBI:17361 (4)
CHEBI:30805 (4)
CHEBI:16914 (4)
CHEBI:27823 (4)
CHEBI:17568 (4)
CHEBI:27480 (4)
CHEBI:55328 (4)
CHEBI:18347 (4)
CHEBI:15727 (4)
CHEBI:16347 (4)
CHEBI:16040 (4)
CHEBI:16857 (4)
CHEBI:15824 (4)
CHEBI:17351 (4)
CHEBI:15843 (4)
CHEBI:17203 (4)
CHEBI:15756 (4)
CHEBI:16919 (4)
CHEBI:17154 (4)
CHEBI:16196 (4)
CHEBI:28716 (4)
CHEBI:22984 (1)

Metabolite Name

Uracil (4)
Bilirubin (3)
Salicylic acid (3)
Indole (3)
Nicotinamide (3)
Glycerophosphocholine (3)
Creatine (3)
Azelaic acid (3)
L-Arginine (3)
L-Carnitine (3)
Cytosine (3)
2-amino-3-methoxybenzoic acid (2)
N-acetyl-L-alanine (2)
L-norleucine (2)
Phosphatidylcholine(36:1) (2)
Piperanine (2)
Berberine (2)
DL-tryptophan (2)
Indole-3-acetaldehyde (2)
L-kynurenine (2)
Kojic acid (2)
L-Palmitoylcarnitine (2)
L-Aspartate (2)
L-lysine (2)
L-histidine (2)
Taurochenodeoxycholate (2)
L-Carnosine (2)
Thiamine monophosphate (2)
1-methyladenosine (2)
Taurodeoxycholic acid (2)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

RNA-seq of coding RNA (4)
Unknown experiment type (1)
Transcription profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (146)
2024 (131)
2023 (118)
2022 (118)
2021 (110)
2020 (55)
2019 (51)
2017 (34)
2018 (30)
2026 (26)
2016 (21)
2015 (18)
2014 (16)
2013 (7)
2012 (6)
2011 (5)
2010 (4)
2009 (2)
2008 (2)
2006 (1)
2001 (1)

Lab affiliation

Central South University (2)
Chinese Academy of Sciences University,Center for Excellence in Molecular & Cellular Sciences, State Key Laboratory of Molecular Biology, Institute of Biochemistry & Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yueyang Rd., Shanghai, China 200031 (1)
Medizinisches Proteom-Center Ruhr-Universität Bochum 44801 Bochum Germany (1)
Shanghai Institute of Biochemistry and Cell Biology/Center for Excellence in Molecular Cell Science (1)
Shanghai Mental Health Center, Shanghai Jiao Tong University School of Medicine, Shanghai, China. Liangzhu Laboratory, MOE Frontier Science Center for Brain Science and Brain-Machine Integration, State Key Laboratory of Brain-Machine Intelligence, Zhejiang University, Hangzhou,China. (1)
sun yat-sen university (1)
Lanzhou University, Lanzhou, Gansu Province, China (1)
Key Laboratory of Health Ministry for Congenital Malformation, Shengjing Hospital, China Medical University, Shenyang, PR China. (1)
Department of Pathogen Biology, School of Clinical and Basic Medical Sciences, Shandong First Medical University & Shandong Academy of Medical Sciences (1)
Shanghai Institute for Materia Medica (1)
Key Laboratory Medical molecular Virology, MoE/MoH Shanghai Medical College, Fudan University 138 Yi Xue Yuan Road, Shanghai, China, 200032 (1)

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Deciphering the composition and microstructure of Jin-Yuan period oil-spot glazes from the archaeological site of Jining Lu of China.

Not available

S-EPMC12514223 | biostudies-literature

Label-free Proteomic Analysis of Exosomes Derived from Inducible Hepatitis B Virus-Replicating HepAD38 Cell Line

Hepatitis B virus (HBV) infection is a major health problem worldwide. Recent evidence suggests that various viruses can manipulate the infection process by secretion of specific viral and cellular components into exosomes, small nanometer-sized (30-150 nm) vesicles secreted from various cells. Howe...

ORGANISM(S): Homo sapiens (Human)

2017-03-01 | PXD004724 | Pride

Zhu2007_TF_modulated_by_Calcium

This a model from the article: A theoretical study on activation of transcription factor modulated by intracellular Ca2+ oscillations. Zhu CL, Zheng Y, Jia Y Biophys. Chem.[2007 Aug:129(1):49-55 17560007, Abstract: This work presents bo...

2024-09-02 | BIOMD0000000166 | BioModels

The pharmacological mechanism of chaihu-jia-longgu-muli-tang for treating depression: integrated meta-analysis and network pharmacology analysis.

Not available

S-EPMC10551636 | biostudies-literature

Lycorine reduces mortality of human enterovirus 71-infected mice by inhibiting virus replication.

Not available

S-EPMC3212826 | biostudies-literature

Efficacy and safety of Shengjiang Xiexin decoction in prophylaxis of chemotherapy-related diarrhea in small cell lung cancer patients: study protocol for a multicenter randomized controlled trial.

Not available

S-EPMC7193543 | biostudies-literature

A novel quick transendoscopic enteral tubing in mid-gut: technique and training with video.

Not available