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TranscriptomicsTranscriptome Shock in an Interspecific F1 Triploid Hybrid of Oryza Revealed by RNA Sequencing
Here, we produced a set of interspecific F1 triploid hybrid plants between Oryza sativa, ssp. japonica (2n = 2x = 24, genome AA) and the tetraploid form of O. punctata (2n = 4x = 48, genome, BBCC), and conducted RNA-seq transcriptome profiling of the hybrids and their exact parental ...
ORGANISM(S): Oryza sp. 
2015-05-02 | E-MTAB-4225 | biostudies-arrayexpress
GenomicsEpigenomic code in atherosusceptible endothelia: epigenomic regulation of HOX transcription factors by oxidative stress
Atherosclerosis preferentially develops in arterial regions where hemodynamic disturbed flow and oxidative stress are present. Epigenomic regulation, especially DNA methylation, plays an essential role in regulating gene expression in response to environmental factors. We investigated the DNA methyl...
ORGANISM(S): Sus scrofa 
2015-04-20 | E-MTAB-1930 | biostudies-arrayexpress
MetabolomicsPlasma metabolome alteration in dairy cows with left displaced abomasum before and after surgical correction
Left displaced abomasum (LDA) leads to substantial changes in the metabolism of dairy cows. Surgical correction of LDA can rapidly improve the health of cows; however, changes in metabolism following surgery are rarely described. To investigate the changes of plasma metabolome in cows with LDA befor...
2022-08-17 | MTBLS4126 | MetaboLights
TranscriptomicsStepwise histone replacement by SWR1 requires dual activation with histone H2A.Z and canonical nucleosome
Histone variant H2A.Z-containing nucleosomes are incorporated at most eukaryotic promoters. This incorporation is mediated by the conserved SWR1 complex, which replaces histone H2A in canonical nucleosomes with H2A.Z in an ATP-dependent manner. Here, we show that promoter-proximal nucleosomes are hi...
ORGANISM(S): Saccharomyces cerevisiae 
2010-10-12 | E-GEOD-24618 | biostudies-arrayexpress
ProteomicsA proteomic view of artificially aged seeds of three rice lines of Kasalath with different anti-aging ability guided by miR164c
MicroRNAs (miRNAs) play important roles in various aspects of plant physiology and metabolism. The expression level of miR164c is negatively correlated with seed vigor in rice (Oryza sativa L.); however, the mechanism of seed vigor regulation by miR164c remains unknown. Here, we studied the proteom...
ORGANISM(S): Oryza sativa (Rice) 
2022-06-09 | PXD031352 | Pride
Mir164c  oryza sativa  anti-aging ability  tmt  kasalath 
MetabolomicsPlasma metabolite changes in dairy cows during parturition identified using untargeted metabolomics
The metabolic responses of cows undergo substantial changes during the transition from late pregnancy to early lactation. However, the molecular mechanisms associated with these changes in physiological metabolism have not been clearly elucidated. The objective of this study was to investigate metab...
2019-08-20 | MTBLS809 | MetaboLights
UnknownAssociation of blood lead levels with methylenetetrahydrofolate reductase polymorphisms among Chinese pregnant women in Wuhan city.
Not available
S-EPMC4344240 | biostudies-literature
TranscriptomicsMSNP data for normal blood, normal bone marrow, CD34+ cells and placenta samples
A novel method for detecting genome-wide ASM (allele-specific methylation) was developed by modification of the Affymetrix 250K StyI SNP arrays. Using this method, and the above mentioned samples, we consistently detected ASM in non-imprinted regions of the genome. Interestingly, ASM appears to be s...
ORGANISM(S): Homo sapiens 
2008-05-10 | E-GEOD-11409 | biostudies-arrayexpress
UnknownThe folding propensity of α/sulfono-γ-AA peptidic foldamers with both left- and right-handedness.
Not available
S-EPMC9814141 | biostudies-literature
ProteomicsA proteomic view of seeds of three rice lines of Kasalath with different anti-aging ability guided by miR164c
MicroRNAs (miRNAs) play important roles in various aspects of plant physiology and metabolism. The expression level of miR164c is negatively correlated with seed vigor in rice (Oryza sativa L.); however, the mechanism of seed vigor regulation by miR164c remains unknown. Here, we studied the proteom...
ORGANISM(S): Oryza sativa (Rice) 
2020-11-02 | PXD022093 | Pride
Mir164c  oryza sativa  anti-aging ability  tmt  kasalath 
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