Jiang Yu Y - OmicsDI

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Unknown (5812)
Proteomics (153)
Transcriptomics (37)
Genomics (21)
Metabolomics (18)
Multiomics (6)
Models (1)

Organisms

Homo sapiens (84)
Schizophyllum commune H4-8 (74)
Mycobacterium tuberculosis SP7 (74)
Candidatus Endoriftia persephonae (74)
Mycobacterium tuberculosis SP10 (74)
Mycobacterium tuberculosis SP13 (74)
Mycobacterium tuberculosis SP22 (74)
Chlamydomonas reinhardtii (74)
Enterococcus mundtii CRL35 (74)
Mus musculus (18)
Arabidopsis thaliana (5)
Zea mays (4)
Drosophila melanogaster (3)
Rattus norvegicus (2)
Mycolicibacterium smegmatis MC2 155 (2)
Solanum lycopersicum (2)
Brassica oleracea (1)
Paralichthys olivaceus (1)
Bombyx mori (1)
Oryza sativa Japonica Group (1)
Saccharomyces cerevisiae (1)
Danio rerio (1)
Anser cygnoides orientalis (1)
Cutibacterium acnes 6609 (1)
Pseudomonas syringae pv. tomato str. DC3000 (1)
Carassius gibelio (1)
Aspergillus flavus NRRL3357 (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Apodidae (1)
Spinacia oleracea (1)

Repository

pride (74)
iProX (71)
biostudies-arrayexpress (37)
EGA (21)
MetaboLights (17)
MassIVE (5)
PeptideAtlas (3)
BioModels (1)
GNPS (1)

Tissue

Cell culture (8)
Liver (6)
Brain (4)
Testis (4)
Blood (4)
Others (3)
Sperm (3)
Root (3)
Rumen (2)
Seminal vesicle (2)
Byssus (2)
Keratinocyte (2)
Oocyte (2)
Blood serum (2)
Heart (2)
Cell suspension culture (2)
Blood plasma (2)
Spleen (2)
Leaf (2)
Corolla (1)
Synapse (1)
Synovia (1)
Extracellular exosome (1)
Small intestine (1)
Glioblast (1)
Prostate gland (1)
Cerebellum (1)
Flower (1)
Seed (1)
Blood platelet (1)

Disease

Multidrug-resistant tuberculosis (1)
Colitis (1)
Cervix carcinoma (1)
Head and neck squamous cell carcinoma (1)
Brain cancer (1)
Alzheimer's disease (1)
Type 2 diabetes mellitus (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (74)
Shotgun proteomics (32)
Mass spectrometry (14)
Bottom-up proteomics (11)
Data-independent acquisition (7)
Gel-based experiment (5)
Data-dependent acquisition (5)
Top-down proteomics (5)
SWATH MS (4)
Affinity purification coupled with mass spectrometry proteomics (4)
Mass spectrometry assay (3)
Illumina HiSeq 2000, ILLUMINA (2)
Mass spectrometry imaging (2)
Illumina 2.5M, Illumina HiSeq 2000 (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
Illumina HiSeq 2000 (1)
Proteogenomics (1)
SRM/MRM (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (8)
Liquid Chromatography MS - positive - reverse phase (6)
Liquid Chromatography MS - positive - hilic (5)
Liquid Chromatography MS - negative - hilic (4)
Orbitrap Fusion Lumos (3)
MS:1000031 (3)
Illumina HiSeq 4000 (2)
LTQ Orbitrap Elite (2)
Liquid Chromatography MS - Negative (LC-MS (NEG)) (1)
Liquid Chromatography MS - Positive (LC-MS (POS)) (1)
Liquid Chromatography MS - alternating – hilic (1)
6530 Q-TOF LC/MS (Agilent) (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - reverse phase (1)
QExactive (1)

Publication Date

2022 (26)
2025 (21)
2026 (17)
2023 (17)
2024 (15)
2021 (14)
2014 (11)
2010 (10)
2020 (10)
2019 (8)
2013 (6)
2016 (4)
2018 (3)
2015 (3)
2009 (3)
2017 (3)
2005 (2)
2012 (2)
2011 (1)
2007 (1)

UNIPROT ID/AC

Q6ZVE7 (3)
Q99619 (3)
Q8N4U5 (3)
Q9UBZ4 (3)
Q96QP1 (3)
Q9Y576 (3)
Q6ZTQ3 (3)
Q9H633 (3)
Q96PC5-2 (3)
Q96PC5 (3)
Q8TDW5 (3)
Q9NXZ2 (3)
Q8IZP6 (3)
Q9UHA2 (3)
Q6MZQ0 (3)
Q9C019 (3)
Q96EP1 (3)
Q8IYM2 (3)
Q86SJ2 (3)
Q02833 (3)
O43194 (3)
Q9Y2C3 (3)
O00338 (3)
Q6NSJ2 (3)
Q17R98 (3)
Q9Y664 (3)
Q9UNP4 (3)
Q96BZ9 (3)
Q8WUA8 (3)
Q3MII6 (3)

ENSEMBL ID

ENSG00000247315 (3)
ENSG00000147251 (3)
ENSG00000170477 (3)

CHEBI ID

CHEBI:17895 (8)
CHEBI:17351 (8)
CHEBI:16708 (7)
CHEBI:17562 (7)
CHEBI:17748 (7)
CHEBI:16335 (7)
CHEBI:15355 (7)
CHEBI:55328 (7)
CHEBI:16704 (7)
CHEBI:18132 (6)
CHEBI:16750 (6)
CHEBI:28875 (6)
CHEBI:17154 (6)
CHEBI:28661 (6)
CHEBI:17568 (6)
CHEBI:17509 (6)
CHEBI:27480 (6)
CHEBI:17405 (6)
CHEBI:16737 (6)
CHEBI:16919 (6)
CHEBI:16347 (6)
CHEBI:17596 (6)
CHEBI:15756 (6)
CHEBI:16828 (6)
CHEBI:17368 (6)
CHEBI:30769 (6)
CHEBI:42504 (5)
CHEBI:17521 (5)
CHEBI:16450 (5)
CHEBI:16040 (5)

Metabolite Name

Uracil (6)
Cytidine (6)
Thymidine (6)
L-Tyrosine (6)
Hypoxanthine (6)
Adenosine (5)
Guanine (5)
Cytosine (5)
Adenine (5)
Guanosine (5)
Inosine (5)
Vanillic acid (4)
Genistein (4)
Thymine (4)
Acetylcholine (4)
Nicotinamide (4)
Taurine (4)
Taurocholic acid (4)
Cholic acid (4)
Arachidonic acid (4)
Pipecolic acid (4)
Azelaic acid (4)
Uridine (4)
Creatinine (4)
Creatine (4)
Glycerophosphocholine (4)
L-Carnitine (4)
L-Valine (4)
L-Leucine (4)
Quercetin (3)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

RNA-seq of coding RNA (17)
Transcription profiling by array (11)
Unknown experiment type (4)
Transcription profiling by SAGE (1)
Comparative genomic hybridization by array (1)
Other (1)
Methylation profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (929)
2022 (831)
2023 (740)
2024 (735)
2021 (619)
2020 (411)
2019 (288)
2018 (253)
2017 (232)
2016 (184)
2015 (153)
2026 (138)
2014 (101)
2013 (71)
2012 (52)
2011 (35)
2010 (34)
2009 (13)
2005 (7)
2008 (6)
2007 (4)
2006 (4)
2004 (3)
2003 (2)
2002 (2)
2001 (1)
2000 (1)

Lab affiliation

Tsinghua University, China (4)
Key Laboratory of Molecular Epigenetics of Ministry of Education (MOE), Northeast Normal University, Changchun, China. (2)
Guangdong Pharmaceutical University (2)
Department of Pathophysiology, Key Laboratory of Ministry of Education for Neurological Disorders, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology (2)
Yangzhou University (2)
Southwest University (2)
China Agricultural University, College of Animal Science and Technolgoy, Animal genetics and breeding (2)
Westlake Laboratory of Life Sciences and Biomedicine, Key Laboratory of Structural Biology of Zhejiang Province, School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China. (1)
Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, Zhejiang 310027, China (1)
Guangxi Disease Prevention and Control Center (1)
Key Laboratory of Cell Proliferation and Differentiation of the Ministry of Education, School of Life Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China (1)
aCollege of Landscape Architecture of Sichuan Agricultural University, Chengdu, Sichuan Province, PR China (1)
Peking University Institute of Advanced Agricultural Sciences, (1)
State Key Laboratory of Reproductive Medicine and Offspring Health, Nanjing Medical University, Nanjing (1)
Institute of Blood Transfusion, Chinese Academy of Medical Sciences & Peking Union Medical College, Chengdu, China, 610052 (1)
Department of Biology, Brain Research Center, Southern University of Science and Technology (1)
College of Marine Life Sciences, Ocean University of China, Qingdao, China (1)
Room 6313, Academic building, The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon (1)
Nanjing Agricultural University, Binjiang Campus (1)
National Engineering Laboratory For Animal Breeding,China Agricultural University,No 2Yuanmingyuan West Rd,Beijing 10093,China (1)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432, Ås, Norway (1)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432,Ås, Norway (1)
Divisions of Pulmonary Biology, Molecular Cardiovascular Biology and Developmental Biology Department of Pediatrics Cincinnati Children's Hospital Medical Center Cincinnati, OH 45229 (1)
Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, Guangdong, China (1)
Department of Dermatology, Huashan Hospital, Fudan University, No.12 Wulumuqizhong Road, Shanghai 200040, China. (1)
Children's Hospital of Nanjing Medical University (1)
Laboratory of Veterinary Pharmacology and Toxicology, College of Animal Science and Technology, Anhui Agricultural University (1)
State Key Laboratory of Reproductive Medicine and Offspring Health, Center for Reproduction and Genetics, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, Suzhou 215002, China (1)
State Key Laboratory of Reproductive Medicine and Offspring Health, Center for Reproduction and Genetics, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, Suzhou 215002, China. (1)
Jining First People's Hospital Affiliated to Shandong First Medical University (1)

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Sperm but not oocyte DNA methylome is inherited by zebrafish early embyros

5-methylcytosine is a major epigenetic modification sometimes called "the fifth nucleotide". However, our knowledge of how offspring inherit the DNA methylome from parents is limited. We generated nine single-base resolution DNA methylomes including zebrafish gametes and early embryos. The...

ORGANISM(S): Danio rerio

2013-05-20 | E-GEOD-44075 | biostudies-arrayexpress

Facilitation of MrgprD by TRP-A1 promotes neuropathic pain.

Not available

S-EPMC6988841 | biostudies-literature

AANL (Agrocybe aegerita lectin 2) is a new facile tool to probe for O-GlcNAcylation.

Not available

S-EPMC6454498 | biostudies-literature

Validation of the Anticolitis Efficacy of the Jian-Wei-Yu-Yang Formula.

Not available

S-EPMC9451982 | biostudies-literature

Identification of key differential compounds in different quality grades of base liquor during the production of Jiang-flavored baijiu.