Johnston R R - OmicsDI

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Unknown (1989)
Transcriptomics (55)
Proteomics (42)
Genomics (15)
Metabolomics (3)
Other (1)

Organisms

Homo sapiens (53)
Mus musculus (27)
Drosophila melanogaster (8)
Zea mays (4)
Saccharomyces cerevisiae (3)
Rattus norvegicus (3)
Phascolarctos cinereus (2)
Canis lupus (1)
Cryptococcus bacillisporus (1)
Oryza sativa Japonica Group (1)
Danio rerio (1)
Arabidopsis thaliana (1)
Bos taurus (1)
Human alphaherpesvirus 1 (1)
Macropus giganteus (1)
Physcomitrium patens (1)

Repository

biostudies-arrayexpress (64)
pride (37)
EGA (5)
MassIVE (4)
MetaboLights (3)
GPMDB (1)
jPOST (1)
ENA (1)

Tissue

Cell culture (10)
Blood (4)
Brain (4)
Neutrophil (4)
Electrically active cell (3)
Epithelial cell (3)
Heart (3)
Cerebral cortex neuron (2)
Liver (2)
B cell (1)
B-lymphocyte (1)
Blood cell (1)
Blood plasma (1)
Blood platelet (1)
Breast invasive ductal carcinoma cell (1)
Cell suspension culture (1)
Chronic lymphocytic leukemia cell (1)
Gametophore (1)
Leaf (1)
Leukocyte (1)
Lymph node (1)
Macrophage (1)
Melanocyte (1)
Milk (1)
Pancreatic adenocarcinoma cell line (1)
Photosynthetic cell (1)
Plant cell (1)
Prostate gland (1)
T cell (1)
T-lymphocyte (1)

Disease

Breast cancer (4)
Glioblastoma (3)
Colon adenocarcinoma (2)
Colorectal cancer (1)
Lung squamous cell carcinoma (1)
Not Available (1)
Arrhythmogenic right ventricular cardiomyopathy (1)
COVID-19 (1)
Cervix carcinoma (1)
Chronic lymphocytic leukemia (1)
Human immunodeficiency virus infectious disease (1)
Lymphoma (1)
Melanoma (1)
Obesity (1)
Pancreatic cancer (1)
Tuberculosis (1)

Technology Type

Mass Spectrometry (37)
Shotgun proteomics (18)
Bottom-up proteomics (9)
Data-independent acquisition (6)
Mass spectrometry (3)
Data-dependent acquisition (3)
Top-down proteomics (3)
SWATH MS (2)
Affinity purification coupled with mass spectrometry proteomics (1)
Gel-based experiment (1)

Instrument Platform

Illumina HiSeq 2000 (3)
Illumina NovaSeq X (2)
GeneChip Scanner 3000 [Affymetrix] (1)
Illumina Genome Analyzer II (1)
Illumina MiSeq (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
NextSeq 500 (1)
Instrument (1)
Orbitrap Eclipse (1)
Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF-X (1)
Synapt MS (1)
Exactive (Thermo Scientific) (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Q Exactive (1)

Publication Date

2012 (15)
2026 (11)
2025 (9)
2016 (8)
2011 (8)
2021 (7)
2015 (7)
2010 (7)
2023 (7)
2019 (5)
2013 (4)
2020 (3)
2014 (3)
2008 (3)
2007 (2)
2004 (2)
2024 (2)
2022 (2)
2018 (2)
2009 (1)
2006 (1)

CHEBI ID

CHEBI:116314 (2)
CHEBI:14336 (2)
CHEBI:15428 (2)
CHEBI:15611 (2)
CHEBI:15676 (2)
CHEBI:15724 (2)
CHEBI:15728 (2)
CHEBI:15741 (2)
CHEBI:15760 (2)
CHEBI:15891 (2)
CHEBI:15940 (2)
CHEBI:15999 (2)
CHEBI:16010 (2)
CHEBI:16108 (2)
CHEBI:16199 (2)
CHEBI:16244 (2)
CHEBI:16335 (2)
CHEBI:16344 (2)
CHEBI:16359 (2)
CHEBI:16449 (2)
CHEBI:16530 (2)
CHEBI:16552 (2)
CHEBI:16695 (2)
CHEBI:16704 (2)
CHEBI:16737 (2)
CHEBI:16750 (2)
CHEBI:16755 (2)
CHEBI:16811 (2)
CHEBI:16870 (2)
CHEBI:16914 (2)

Metabolite Name

Cytidine (2)
Guanine (2)
N-acetylserine (2)
Uridine (2)
Vanillin (2)
(-)-epigallocatechin (1)
(4-chloro-2-methylphenoxy)acetic acid (1)
(R)-2-hydroxystearic acid (1)
1,3-dimethylurate (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0) (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0) (1)
1-(1-enyl-stearoyl)-2-linoleoyl-GPE (P-18:0/18:2) (1)
1-(1-enyl-stearoyl)-GPE (P-18:0) (1)
1-arachidonoyl-GPC (20:4n6) (1)
1-arachidonoyl-GPI (20:4) (1)
1-linoleoyl-2-arachidonoyl-GPC (18:2/20:4n6) (1)
1-linoleoyl-GPC (18:2) (1)
1-linoleoyl-GPE (18:2) (1)
1-methylguanidine (1)
1-methylhistidine (1)
1-methylnicotinamide (1)
1-methylxanthine (1)
1-oleoyl-2-linoleoyl-GPC (18:1/18:2) (1)
1-oleoyl-GPC (18:1) (1)
1-oleoyl-GPI (18:1) (1)
1-palmitoyl-2-arachidonoyl-GPC (16:0/20:4) (1)

First Public Date

2021 (1)

Study type

Transcription profiling by array (36)
RNA-seq of coding RNA (10)
ChIP-seq (7)
RNA-seq of coding RNA from single cells (3)
DNA-seq (2)
RNA-seq of non coding RNA (2)
Transcription profiling by SAGE (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Other (1)

Release Date

2021 (233)
2022 (211)
2024 (199)
2023 (197)
2025 (186)
2020 (173)
2019 (144)
2018 (106)
2016 (87)
2015 (85)
2017 (75)
2014 (70)
2012 (49)
2013 (45)
2010 (34)
2026 (33)
2011 (33)
2009 (24)
2008 (23)
2006 (10)
2005 (9)
2007 (8)
2004 (5)
2003 (4)
2002 (4)
1999 (3)
2001 (1)
2000 (1)
1998 (1)

Lab affiliation

Atomic Virology Lab, Division of Virology, Department of Pathology, University of Cambridge (2)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (2)
La Trobe University, Melbourne, Australia (2)
Associate Professor, Department of Biomedical Sciences,Affiliated with The Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen (1)
Breast Cancer Now The Institute of Cancer Research (1)
Breast Cancer Now Toby Robins Research Centre The Institute of Cancer Research London (1)
Canary Center at Stanford for Cancer Early Detection Department of Radiology School of Medicine Stanford University (1)
Cancer Research UK, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE (1)
Cancer Sciences, Faculty of Medicine, University of Southampton, UK (1)
Centre for Inflammation Research, Institute for Regeneration and Repair (1)
Centre for Inflammation Research, Institute for Regeneration and Repair, University of Edinburgh (1)
Centre for Inflammation Research, Queen’s Medical Research Institute, University of Edinburgh, Edinburgh, UK (1)
Centre for Inflammation research, Institute for Regeneration and Repair, University of Edinburgh (1)
Charles Perkins Centre, School of Medical Sciences, The University of Sydney, Sydney, NSW, Australia. (1)
Crop Genetics John Innes Centre Norfolk United Kingdom (1)
Department of Chemistry and Biochemistry, Brigham Young University (1)
Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT, 84602 (1)
Department of Chemistry, Imperial College London, Exhibition Road, London SW7 2AZ, UK (1)
Department of Microbiology & Immunology, Cornell University College of Veterinary Medicine (1)
Department of Pathology, University of Cambridge (1)
Division of Molecular and Cellular Function School of Biological Sciences The University of Manchester M139PT Manchester UK (1)
Faculty of Medicine, University of Maribor, Slovenia Faculty of Chemistry and Chemical Engineering, University of Maribor, Slovenia (1)
GlaxoSmithKline (GSK) (1)
Institute for Molecular Biosciences University of Queensland Brisbane Qld 4072 Australia (1)
La Trobe University (1)
Mark R. Chance, Ph.D. Vice Dean for Research Charles W. and Iona A. Mathias Professor of Cancer Research Director, Center for Proteomics and Bioinformatics School of Medicine Case Western Reserve University 930 BRB, 10900 Euclid Ave. Cleveland OH 44106 (1)
School of Life and Environmental Sciences, Charles Perkins Centre, University of Sydney, Australia (1)
School of Veterinary Science, The University of Queensland, Gatton, QLD 4343, Australia (1)
Spiros D. Garbis, PhD Faculty of Medicine, Cancer Sciences and CES Units, Institute for Life Sciences, University of Southampton 3001, Life Sciences Building 85, Highfield Campus Southampton, SO17 1BJ, UK Tel: 0044 02380593483 (1)
The Institute of Cancer Research Breast Cancer Now (1)

Tags

covid19 (1)

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Lisocabtagene maraleucel for R/R LBCL in patients not intended for HSCT: final results of the phase 2 PILOT study.

Not available

S-EPMC12305224 | biostudies-literature

Response of iPSC-derived neurons from individuals with treatment-resistant depression to (2 R,6 R)-hydroxynorketamine and reelin: an exploratory study.

Not available

S-EPMC12705751 | biostudies-literature

Transcriptomic analyses indicate that ligule initiation recapitulates gene expression patterns that occur at lateral branching

Development of multicellular organisms proceeds via the correct interpretation of positional information to establish boundaries that separate developmental fields with distinct identities. The maize leaf is an ideal system to study plant morphogenesis as it is subdivided into a proximal sheath and ...

ORGANISM(S): Zea mays

2014-09-12 | E-GEOD-61333 | biostudies-arrayexpress

Drosophila Johnston organ genes

Hemizygous ato[1]/Df(3R)p[13] null mutants lack Johnston organ (JO) in their 2nd antennal segment. We screened for genes that are expressed in JO by comparing the 2nd antennal segment transcriptomes between ato[1]/Df(3R)p[13] mutants and balanced Df(3R)p[13]/TM3 and ato[1]/TM3 controls. To assess t...

ORGANISM(S): Drosophila melanogaster

2012-08-31 | E-MEXP-3609 | biostudies-arrayexpress

Dose-Adjusted EPOCH-R Compared With R-CHOP as Frontline Therapy for Diffuse Large B-Cell Lymphoma: Clinical Outcomes of the Phase III Intergroup Trial Alliance/CALGB 50303.

Not available

S-EPMC6774813 | biostudies-literature

crosshap: R package for local haplotype visualization for trait association analysis.

Not available

S-EPMC10471896 | biostudies-literature

Early treatment intensification with R-ICE and 90Y-ibritumomab tiuxetan (Zevalin)-BEAM stem cell transplantation in patients with high-risk diffuse large B-cell lymphoma patients and positive interim PET after 4 cycles of R-CHOP-14.

Not available

S-EPMC5286943 | biostudies-literature

Discovery of a biomarker and lead small molecules to target r(GGGGCC)-associated defects in c9FTD/ALS.