Jones I S IS - OmicsDI

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Unknown (4025)
Transcriptomics (198)
Genomics (184)
Proteomics (61)
Metabolomics (46)
Models (1)
Genomic (1)
Other (1)
Multiomics (1)

Organisms

Homo sapiens (269)
Caenorhabditis elegans (56)
Mus musculus (32)
Arabidopsis thaliana (14)
Rattus norvegicus (9)
Streptococcus pneumoniae (3)
Drosophila melanogaster (2)
Globodera pallida (2)
Schizosaccharomyces pombe (2)
Staphylococcus aureus (2)
Triticum aestivum (2)
Escherichia coli (2)
Nicotiana tabacum (2)
Bacillus anthracis (1)
Candida albicans (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Francisella tularensis (1)
Fusarium oxysporum f. sp. niveum (1)
Heterodera avenae (1)
Picea glauca (1)
Populus trichocarpa x Populus deltoides (1)
Populus x canadensis (1)
Saccharomyces cerevisiae (1)
Schistosoma mansoni (1)
Solanum tuberosum (1)
Spea bombifrons (1)
Staphylococcus aureus subsp. aureus USA300 (1)
Staphylococcus aureus subsp. aureus str. Newman (1)
Taeniopygia guttata (1)
Zea mays (1)

Organisms

Escherichia coli str. K-12 substr. MG1655 (1)

Repository

biostudies-arrayexpress (264)
EGA (117)
MetaboLights (44)
pride (41)
MassIVE (15)
GNPS (2)
PAXDB (2)
BioModels (1)
dbGaP (1)
GPMDB (1)
jPOST (1)
PanoramaPublic (1)
PeptideAtlas (1)
ENA (1)

Tissue

Cell culture (9)
Brain (5)
Blood plasma (3)
Epithelial cell (3)
Lung (3)
Blood (2)
Bone marrow (2)
Kidney (2)
Leaf (2)
Liver (2)
Plant cell (2)
Skin (2)
Brain (1)
Adipose tissue (1)
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Breast epithelium (1)
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Cell suspension culture (1)
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Connective tissue (1)
Heart (1)
Hepatocyte (1)
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Lymph node (1)

Disease

Normal (3)
Sarcoma (3)
Wilms tumour (2)
Brain cancer (2)
Breast cancer (2)
Melanoma (2)
Neuroblastoma (2)
Bladder transitional carcinoma (1)
Central nervous system cancer (1)
Ductal breast cancer (1)
None (1)
Perilobar nephrogenic rest (1)
Pilocytic astrocytoma (1)
Not Available (1)
Acute leukemia (1)
Amyotrophic lateral sclerosis (1)
Childhood extraosseous osteosarcoma (1)
Cholangiocarcinoma (1)
Chronic bronchitis (1)
Colon cancer (1)
Dengue disease (1)
Dengue hemorrhagic fever (1)
Dengue shock syndrome (1)
Disease free (1)
Embryonal rhabdomyosarcoma (1)
Fibrosarcoma (1)
Head and neck cancer (1)
Inflammation (1)
Leigh disease (1)
Leiomyoma (1)

Technology Type

Mass Spectrometry (41)
Mass spectrometry (34)
Shotgun proteomics (21)
Affinity purification coupled with mass spectrometry proteomics (9)
Bottom-up proteomics (7)
Illumina HiSeq 2000 (5)
Mass spectrometry assay (5)
NMR spectroscopy (5)
SWATH MS (4)
Data-dependent acquisition (3)
Data-independent acquisition (3)
Top-down proteomics (3)
Illumina HiSeq 2500 (2)
DiaPASEF (2)
Gel-based experiment (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, HumanMethylation450k Bead Chip - Genome Studio, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2500, Illumina MiSeq (1)
Life Tech - Solid (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
HDMSE (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (9)
Liquid Chromatography MS - positive - reverse phase (9)
Exactive (Thermo Scientific) (6)
Q Exactive (5)
Liquid Chromatography MS - positive - hilic (5)
Illumina NovaSeq 6000 (4)
Q TRAP (4)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (4)
Liquid Chromatography MS - negative - hilic (4)
GenePix Professional 4200A [Axon Instruments] (3)
Illumina HiSeq 2000 (3)
Illumina HiSeq 4000 (3)
Q Exactive Plus (3)
5975C Series GC/MSD (Agilent) (3)
Agilent Bravo NGS workstation, Microlab STAR automated liquid handler (Hamilton Robotics), PCR machine (MJ Research Peltier Thermal Cycler) (2)
BD Influx sorter (2)
NextSeq 500 (2)
SolariX (2)
Orbitrap Fusion (2)
Q Exactive HF (2)
LTQ Orbitrap (2)
GenePix 4000B [Axon Instruments] (1)
GenePix Personal 4100A [Axon Instruments] (1)
Illumina Genome Analyzer II (1)
Quiagen Mini prep kit (1)
Scanning hardware (1)
Instrument (1)
Orbitrap Eclipse (1)
Orbitrap Fusion ETD (1)
TimsTOF (1)

Publication Date

2013 (83)
2014 (29)
2012 (26)
2021 (21)
2015 (19)
2010 (19)
2008 (19)
2011 (18)
2023 (17)
2016 (16)
2022 (14)
2009 (14)
2020 (11)
2025 (10)
2024 (10)
2017 (8)
2026 (8)
2019 (7)
2018 (5)
2007 (5)
2006 (5)
2005 (2)
2004 (2)

UNIPROT ID/AC

10090.ENSMUSP00000072775 (2)
10090.ENSMUSP00000079944 (2)
10090.ENSMUSP00000105709 (2)
10090.ENSMUSP00000117461 (2)
10090.ENSMUSP00000127198 (2)
10090.ENSMUSP00000132065 (2)
10090.ENSMUSP00000132102 (2)
10090.ENSMUSP00000136357 (2)
10090.ENSMUSP00000136375 (2)
10090.ENSMUSP00000136544 (2)
10090.ENSMUSP00000137171 (2)
10090.ENSMUSP00000137236 (2)
1433B_MOUSE (2)
1433E_MOUSE (2)
1433Z_MOUSE (2)
2AAA_MOUSE (2)
3BHS1_MOUSE (2)
3HIDH_MOUSE (2)
4F2_MOUSE (2)
6PGD_MOUSE (2)
6PGL_MOUSE (2)
A0A087WQ89_MOUSE (2)
A0A140T8T4_MOUSE (2)
A0A1W2P6N8_MOUSE (2)
AACS_MOUSE (2)
AAK1_MOUSE (2)
AATC_MOUSE (2)
ABCA5_MOUSE (2)
ABHEB_MOUSE (2)
ACAD9_MOUSE (2)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:15428 (11)
CHEBI:16737 (10)
CHEBI:17596 (10)
CHEBI:30769 (10)
CHEBI:16015 (9)
CHEBI:17750 (9)
CHEBI:15354 (8)
CHEBI:15741 (8)
CHEBI:15971 (8)
CHEBI:17368 (8)
CHEBI:17724 (8)
CHEBI:17895 (8)
CHEBI:22653 (8)
CHEBI:32816 (8)
CHEBI:16335 (7)
CHEBI:16414 (7)
CHEBI:16708 (7)
CHEBI:16857 (7)
CHEBI:16919 (7)
CHEBI:17084 (7)
CHEBI:17568 (7)
CHEBI:18012 (7)
CHEBI:25094 (7)
CHEBI:28300 (7)
CHEBI:15366 (6)
CHEBI:15603 (6)
CHEBI:15891 (6)
CHEBI:16199 (6)
CHEBI:16393 (6)
CHEBI:16449 (6)

Metabolite Name

Glycine (7)
Citric acid (6)
Adenosine (5)
Betaine (5)
Glycerol (5)
Hypoxanthine (5)
L-Tyrosine (5)
Tyrosine (5)
Urea (5)
Uridine (5)
ADP (4)
ATP (4)
Adenine (4)
Alanine (4)
Choline (4)
Citrulline (4)
Creatine (4)
Creatinine (4)
D-Glucose (4)
Glutamine (4)
Glycine (4)
Inosine (4)
L-Glutamine (4)
L-Histidine (4)
L-Isoleucine (4)
L-Leucine (4)
L-Valine (4)
L-histidine (4)
L-serine (4)
UDP-N-acetylglucosamine (4)

First Public Date

2014 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (2)
Director, Centre for Proteome Research Department of Biochemistry & Systems Biology Institute of Systems, Molecular & Integrative Biology University of Liverpool Crown Street, Liverpool L69 7ZB +44 151 795 4424 (2)
BPMP, CNRS, INRAE, Institut Agro, Univ Montpellier, 34060 Montpellier, France (1)
Cancer Research UK, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE (1)
Center for Neuroscience and Cell Biology – University of Coimbra (1)
Centre for Proteomic Research B85, Life Sciences Building University of Southampton University Road Highfield Southampton, Hants. SO17 1BJ United Kingdom (1)
Centre for Tumor Biology, Barts Cancer Institute – a CR-UK Centre of Excellence, Queen Mary University of London, John Vane Science Centre, Charterhouse Square, London, EC1M 6BQ, United Kingdom (1)
Clinical Research Division, Fred Hutchinson Cancer Reseaarch Center (1)
Computational Mass Spectrometry Group - Brazil (1)
Discovery Proteomics Facility, Oxford (1)
Division of Applied Functional Genomics, German Cancer Research Center (DKFZ) and National Center for Tumor Diseases (NCT), NCT Heidelberg, Germany (1)
Division of Biological Chemistry & Drug Discovery University of Dundee (1)
Division of Systems and Cellular Medicine School of Medicine University of Dundee (1)
Functional Proteomics, ICR (1)
Head of the Curie Institute Mass Spectrometry Platform (1)
Institute for Medical Virology, University of Zurich (1)
Institute of Science and Technology in Medicine, Keele Univeristy, Keele, Staffordshire, UK Robert Jones and Agnes Hunt Orthopaedic Hospital, Oswestry, Shropshire, UK (1)
Laboratoire PRISM INSERM U1192 (1)
Laboratory for Biomedical Mass Spectrometry, Newcastle University Biosciences Institute, Newcastle University, England (1)
Laboratory of Genetics, The Salk Institute for Biological Studies, 10010 North Torrey Pines Road, La Jolla, CA 92037, USA. (1)
MRC-Laboratory of Medical Sciences (1)
Maynooth University Department of Biology Maynooth University, Maynooth, Co. Kildare, Ireland. (1)
Molecular and Systems Oncology Laboratory Division of Molecular Pathology The Isntitute of Cancer Research London, United Kingdom (1)
Molecular and Systems Oncology Team Institute of Cancer Research London, UK (1)
Nuffield Department of Medicine, University of Oxford (1)
Principal Investigator „Stem Cell Metabolism“ Group Department of General Pediatrics, Neonatology, and Pediatric Cardiology University Clinic Düsseldorf (UKD), Heinrich Heine University (HHU) Moorenstraße 5, 40225 Düsseldorf, Germany Building 13.41, Level 3, Room 29 (1)
Prteomics Facility, Council of Scientific and Industrial Research (CSIR), Pretoria, South Africa (1)
School of Cellular and Molecular Medicine University of Bristol Biomedical Sciences Building University Walk Bristol BS8 1TD, UK (1)
TDI/CMD nuffield department of medicine, University of Oxford (1)
Target Discovery Institute, Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, UK (1)

IsPrivate

False (1)

Classification

bacteria (1)

Modification

4-dinitrophenyl modified residue (1)

Study type

Transcription profiling by array (121)
ChIP-seq (64)
RNA-seq of coding RNA (24)
Comparative genomic hybridization by array (9)
Methylation profiling by array (9)
RNA-seq of non coding RNA (6)
Unknown experiment type (6)
ChIP-chip by tiling array (4)
Genotyping by array (3)
Transcription profiling by RT-PCR (3)
Transcription profiling by SAGE (3)
Methylation profiling by high throughput sequencing (2)
RNA-seq of coding RNA from single cells (2)
RNA-seq of total RNA (2)
ATAC-seq (1)
Capture-C (1)
Human - One-color microarray (1)
MicroRNA profiling by array (1)
Other (1)
Transcription profiling by high throughput sequencing (1)

Release Date

2022 (526)
2023 (434)
2021 (434)
2024 (391)
2025 (382)
2020 (321)
2019 (293)
2018 (248)
2017 (204)
2015 (175)
2013 (157)
2016 (147)
2014 (133)
2012 (102)
2011 (77)
2010 (69)
2026 (61)
2009 (49)
2008 (36)
2007 (14)
2006 (13)
2004 (8)
2005 (6)
1999 (3)
2003 (2)
2002 (2)
2000 (1)
1998 (1)

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Valeriana jatamansi Jones Inhibits Rotavirus-Induced Diarrhea via Phosphatidylinositol 3-Kinase/Protein Kinase B Signaling Pathway.

Rotavirus (RV), as the main cause of diarrhea in children under 5 years, contributes to various childhood diseases. Valeriana jatamansi Jones is a traditional Chinese herb and possesses antiviral effects. In this study we investigated the potential mechanisms of V. jatamansi Jones in R...

S-EPMC9705907 | biostudies-literature

Gingival Enlargement in a Case of Variant Jones Syndrome: a Case Report.

Gingival enlargement can be caused by a variety of etiological factors like inflammation, drugs, and systemic diseases or can be presented as a part of a syndrome. One such syndrome is Jones Syndrome, which is associated with gingival enlargement and progressive hearing loss. We present here a case ...

S-EPMC4771055 | biostudies-literature

High-performance near-infrared Schottky-photodetector based graphene/In₂S₃ van der Waals heterostructures.

Two-dimensional (2D) β-In₂S₃ is a natural defective n-type semiconductor attracting considerable interest for its excellent photoelectronic performance. However, β-In₂S₃ based photodetectors exhibited a weak near-infrared photoresponse compared to visible ...

S-EPMC9054918 | biostudies-literature

Genotypic and Environmental Effects on the Volatile Chemotype of Valeriana jatamansi Jones.

Valeriana jatamansi Jones is an aromatic medicinal herb and important alternative to V. officinalis, which is utilized for medicinal purposes in China and India and also as spices in India. Bioactive ingredients of V. jatamansi vary in different regions. However, no information ...

S-EPMC6048435 | biostudies-literature

Microbiome transition mediated plant immune response to Alternaria solani (Ellis & Martin) Jones & Grout infection in tomato (Solanum lycopersicum L.).

Alternaria solani (Ellis & Martin) Jones & Grout, causing early blight infection in solanaceous crops, is a growing threat influencing sustainable crop production. Understanding the variation in the foliar microbiome, particularly the bacterial community during pathogenesis, can provid...

S-EPMC11409117 | biostudies-literature

Diffusion-induced enhanced photoresponsivity and detectivity in an Ag2S/In2Se3 heterostructure for a UV-visible photodetector: an experimental and computational analysis.

Photodetectors play a pivotal role in recently developed optical communication and imaging systems. Metal chalcogenide-based photodetectors are widely used for visible light photodetection. In this regard, a combined heterostructure of In₂Se₃ and Ag₂S is a promising ...

S-EPMC12833948 | biostudies-literature

Retention of high-pressure solution-processable metastable phase to ambience via differential sublattice rigidity for broadband photodetectors.

Materials science exploits only properties that are available at ambience. Therefore, although high-pressure changes the physical state of all condensed matter, most of the extraordinary properties discovered vanish after decompression and cannot be utilized. Here, we demonstrate sublattice decoupli...

S-EPMC11885606 | biostudies-literature

Manipulating perovskite structural asymmetry for high-performing self-powered full-stokes polarimetry.

Developing direct full-stokes imaging polarimetry is essential for various applications but remains challenging. Perovskites have superior optoelectronic properties and structural diversity, making them ideal candidates for high-performing direct full-stokes polarimetry. However, perovskite suffers ...

S-EPMC11870067 | biostudies-literature

High-Performance ZnPc Thin Film-Based Photosensitive Organic Field-Effect Transistors: Influence of Multilayer Dielectric Systems and Thin Film Growth Structure.

The key impact and significance of a multilayer polymer-based dielectric system on the remarkable photoresponse properties of zinc phthalocyanine (ZnPc)-based photosensitive organic field-effect transistors (PS-OFETs) have been systematically analyzed at various incident optical powers. A combinatio...

S-EPMC6641034 | biostudies-literature

Pontopolycope orientalis sp. nov. (Crustacea: Ostracoda: Polycopidae), the First Report of a Living Species of the Genus from the Indo-Pacific Region.

The present study describes Pontopolycope orientalis sp. nov. (Polycopidae), which was collected from the shallow sandy bottom off of Nagannu Island, Okinawa Prefecture, southwestern Japan. This new species is the first living representative of Pontopolycope from the Indo-Pacific regio...

S-EPMC7396926 | biostudies-literature

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4517 Results

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