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TranscriptomicsRNA sequencing of control and OJAP_WD199 knock out mutant in mature rice anthers. (oryza sativa jap.)
OJAP_WD199 was annotated as partial WD40 genes, whereas showed strong pollen-specific expression. We generated CRISPR-Cas9-induced loss-of-function mutants for OJAP_WD199 and identified homozygous lines with mutations at two independent target sites per gene. Compared to wild-type (WT) plants, ferti...
ORGANISM(S): Oryza sativa Japonica Group 
2026-01-01 | E-MTAB-15310 | biostudies-arrayexpress
TranscriptomicsRNA sequencing of control and OJAP_WD37 knock out mutant in mature rice anthers. (oryza sativa jap.)
OJAP_WD37 was annotated as partial WD40 genes, whereas showed strong pollen-specific expression. We generated CRISPR-Cas9-induced loss-of-function mutants for OJAP_WD37 and identified homozygous lines with mutations at two independent target sites per gene. Compared to wild-type (WT) plants, fertili...
ORGANISM(S): Oryza sativa Japonica Group 
2026-01-01 | E-MTAB-15313 | biostudies-arrayexpress
TranscriptomicsRNA sequencing of control and OsRac6 knockout mutant in mature rice anthers
Rice anthers at anthesis stage from the wild type and osrac6-1 mutant anther (Dongjin cultivar) We collected the sample from our field and immediately froze the samples with liquid nitrogen.
ORGANISM(S): Oryza sativa Japonica Group 
2024-07-02 | E-MTAB-13965 | biostudies-arrayexpress
TranscriptomicsProfiling ethanol-targeted transcription factors in human carcinoma cell-derived embryoid bodies.
A total of 493 differentially expressed genes were identified in response to 50 mM ethanol exposure, in which 111 of them were up-regulated and 382 were down-regulated. Gene ontology term enrichment analysis revealed that the genes are involved in the important biological processes like neurological...
ORGANISM(S): Homo sapiens 
2015-04-15 | E-GEOD-67864 | biostudies-arrayexpress
TranscriptomicsGenome-wide expression profiling in a Fusarium graminearum lacking FgVelB, a velvet complex gene
Using a 3'-tiling microarray covering the whole F. graminearum genes, we carried out genome-wide expression analyses of both a wild type and a FgVelB deletion strainn of F. graminearum at a sexual stage (3 days after perithecial induction on carrot agar) Our study is the first report elucidating re...
ORGANISM(S): Gibberella zeae 
2012-08-02 | E-GEOD-36638 | biostudies-arrayexpress
ProteomicsnextPP for chromosome-based proteomic research using neXtProt and GENCODE databases
In this study, we introduce a streamlined pipeline using customized and concatenated GENCODE and neXtProt databases with controlled false discovery rate (FDR) for finding GENCODE ASVs and missing proteins while mapping onto single amino acid variants (SAAVs) from Hippocampal dataset.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-07-25 | MSV000081385 | MassIVE
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