Jung X X - OmicsDI

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Unknown (1210)
Transcriptomics (167)
Proteomics (120)
Genomics (67)
Metabolomics (15)
Other (1)

Organisms

Homo sapiens (162)
Mus musculus (80)
Arabidopsis thaliana (16)
Saccharomyces cerevisiae (13)
Oryza sativa (3)
Drosophila melanogaster (3)
Xenopus laevis (3)
Gordonia sp. KTR9 (2)
Schizophyllum commune (2)
Harpegnathos saltator (2)
Bos taurus (2)
Glycine max (2)
Caenorhabditis elegans (2)
Canis lupus familiaris (2)
Gallus gallus (2)
Danio rerio (2)
Rhodococcus jostii RHA1 (1)
uncultured bacterium (1)
Synechocystis sp. PCC 6803 (1)
Gossypium hirsutum (1)
Salmonella enterica subsp. enterica serovar Typhi (1)
Fundulus heteroclitus (1)
Enterococcus faecalis OG1RF (1)
Chlamydomonas reinhardtii (1)
synthetic construct (1)
Oryza sativa Indica Group (1)
Streptomyces coelicolor (1)
Schizosaccharomyces pombe (1)
Mycobacterium tuberculosis (1)
Staphylococcus aureus (1)

Repository

biostudies-arrayexpress (196)
pride (100)
EGA (37)
MassIVE (17)
MetaboLights (15)
PeptideAtlas (2)
ENA (2)
GPMDB (1)

Tissue

Cell culture (25)
Epithelial cell (11)
Kidney (7)
Permanent cell line cell (7)
Brain (5)
B cell (4)
Stem cell (4)
Blood cell (3)
Blood plasma (3)
Embryo (3)
Blood (2)
Blood serum (2)
Cell suspension culture (2)
Fibroblast (2)
HeLa cell (2)
Leaf (2)
Liver (2)
Skeletal muscle (2)
Adipose tissue (1)
Adipose-derived stromal cell (1)
Bone marrow (1)
Breast (1)
Cerebellum (1)
Cerebrospinal fluid (1)
Clitoris (1)
Colon (1)
Early embryonic cell (1)
Egg (1)
Esophageal adenocarcinoma cell (1)
HEK-293 cell (1)

Disease

Acute leukemia (5)
Breast cancer (4)
Cervix carcinoma (4)
Disease free (3)
Alzheimer's disease (2)
Limb-girdle muscular dystrophy (2)
Normal (1)
Not Available (1)
Bladder adenocarcinoma (1)
Bladder transitional cell carcinoma (1)
Brain cancer (1)
Cardiovascular system disease (1)
Chronic lymphocytic leukemia (1)
Diabetes mellitus (1)
Glioblastoma (1)
Lymphoma (1)
Malignant neoplasm of ovary (1)
Merkel cell carcinoma (1)
Metabolic dysfunction-associated steatotic liver disease (1)
Mucinous pancreas adenocarcinoma (1)
Neurodegenerative disease (1)
Obesity (1)
Papillary renal cell carcinoma (1)
Prion disease (1)
Prostate adenocarcinoma (1)
Salt (1)
Skin cancer (1)
Stomach cancer (1)

Technology Type

Mass Spectrometry (100)
Shotgun proteomics (57)
Bottom-up proteomics (16)
Mass spectrometry (12)
Affinity purification coupled with mass spectrometry proteomics (12)
Data-dependent acquisition (7)
Data-independent acquisition (7)
Chemical cross-linking coupled with mass spectrometry proteomics (6)
Gel-based experiment (5)
NMR spectroscopy (2)
SRM/MRM (2)
SWATH MS (2)
Mass spectrometry assay (1)
DiaPASEF (1)
Immunopeptidomics (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (5)
NextSeq 500 (4)
LTQ Orbitrap Elite (4)
LTQ Orbitrap (3)
TripleTOF 5600 (3)
Liquid Chromatography MS - positive - reverse phase (3)
Illumina NovaSeq X (2)
Illumina HiSeq 2000 (2)
LTQ Orbitrap Velos Pro (2)
LTQ Velos (2)
MS:1000031 (2)
Orbitrap Fusion (2)
Gas Chromatography MS - Positive (GC-MS (Positive)) (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - hilic (2)
Chromium Controller, 10x Genomics and Chromium X, 10x Genomics (1)
Chromium Controller, 10x Genomics and Chromium X, 10x Genomics (1)
Cell culture (1)
GenePix 4200A (1)
NextSeq 2000 (1)
Illumina HiSeq 4000 (1)
Instrument (1)
Impact (1)
LTQ Orbitrap Velos (1)
Q Exactive (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)
TripleTOF 6600 (1)
Direct infusion MS - positive (1)

Publication Date

2014 (32)
2012 (26)
2015 (24)
2010 (23)
2025 (21)
2013 (21)
2026 (18)
2023 (18)
2011 (17)
2020 (16)
2024 (15)
2016 (15)
2018 (14)
2019 (13)
2022 (12)
2017 (11)
2008 (11)
2021 (8)
2009 (6)
2007 (3)
2004 (3)
2006 (2)

UNIPROT ID/AC

P06208-2 (2)
Q0250 (1)

CHEBI ID

CHEBI:15354 (5)
CHEBI:15741 (5)
CHEBI:15756 (5)
CHEBI:26271 (5)
CHEBI:27897 (5)
CHEBI:32816 (5)
CHEBI:15428 (4)
CHEBI:16449 (4)
CHEBI:16811 (4)
CHEBI:17368 (4)
CHEBI:17596 (4)
CHEBI:17724 (4)
CHEBI:17754 (4)
CHEBI:17822 (4)
CHEBI:17992 (4)
CHEBI:25017 (4)
CHEBI:27266 (4)
CHEBI:28757 (4)
CHEBI:30769 (4)
CHEBI:6650 (4)
CHEBI:16015 (3)
CHEBI:16113 (3)
CHEBI:16737 (3)
CHEBI:16865 (3)
CHEBI:16919 (3)
CHEBI:17126 (3)
CHEBI:17750 (3)
CHEBI:18183 (3)
CHEBI:22653 (3)
CHEBI:24898 (3)

Metabolite Name

Isoleucine (3)
Palmitic acid (3)
Threonine (3)
Valine (3)
Alanine (2)
Alanine (2)
Arginine (2)
Asparagine (2)
Choline (2)
Citric acid (2)
D-ribose (2)
Fructose (2)
Fructose (2)
Glycerol (2)
Glycerol (2)
Glycine (2)
Glycine (2)
Hypoxanthine (2)
Inosine (2)
Leucine (2)
Malic acid (2)
Mannose (2)
N,N-dimethylglycine (2)
Phenylalanine (2)
Proline (2)
Pyruvic acid (2)
Serine (2)
Sucrose (2)
Tryptophan (2)
Xylose (2)

First Public Date

2014 (1)
2013 (1)

Study type

Transcription profiling by array (97)
ChIP-seq (24)
RNA-seq of coding RNA (24)
RNA-seq of non coding RNA (22)
Comparative genomic hybridization by array (6)
Methylation profiling by high throughput sequencing (4)
Other (3)
RNA-seq of coding RNA from single cells (3)
Unknown experiment type (2)
Genotyping by array (2)
Transcription profiling by RT-PCR (2)
Transcription profiling by SAGE (1)
ChIP-chip by tiling array (1)
ChIP-chip by array (1)
ATAC-seq (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)
Proteomic profiling by array (1)

Release Date

2022 (146)
2023 (144)
2025 (137)
2021 (114)
2024 (100)
2020 (100)
2018 (73)
2015 (71)
2017 (70)
2019 (70)
2016 (63)
2014 (62)
2012 (55)
2013 (50)
2010 (35)
2011 (31)
2008 (23)
2026 (21)
2009 (14)
2007 (10)
2006 (6)
2004 (3)
2005 (3)
2001 (2)
2003 (1)
2002 (1)
1999 (1)

Lab affiliation

Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (5)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (2)
Epithelial Systems Biology Laboratory Systems Biology Center Division of Intramural Research National Heart, Lung and Blood Institute Building 10, Room 6N307 Bethesda, Maryland 20895-1603 (2)
Kyung Hee University (2)
National Center for Biotechnology (CNB-CSIC), Department of Macromolecular Structures) (2)
Apoptosis and Molecular Disease Lab, Department of Biological Sciences, Seoul National University (1)
Assistant Professor of Neurosurgery Department of Neurosurgery Houston Methodist Research Institute Weill Cornell Medical College (1)
Associate Professor, Department of Laboratory Medicine, UCSF (1)
Baylor College of Medicine (1)
Center for Functional Protein Assemblies, Technical University of Munich, Germany (1)
Center for Plant Molecular Biology (ZMBP) Plant Physiology University of Tübingen Tübingen Germany (1)
Center for Proteomics & Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (1)
Center for RNA Research, Institute for Basic Science, Seoul 08826, Korea School of Biological Sciences, Seoul National University, Seoul 08826, Korea (1)
Center for RNA Research, Institute for Basic Science, Seoul National University (1)
Children's Medical Research Insitute (1)
Children's Medical Research Institute, Westmead, Sydney, Australia (1)
Children’s Hospital of Philadelphia 3615 Civic Center Blvd. Philadelphia, PA 19104 (1)
David Meierhofer, MS facility, Max Planck Institute for Molecular Genetics, Berlin-Dahlem, Germany ( lab head ) (1)
Department of Anatomy and Cell Biology, Martin Luther University Faculty of Medicine, Halle (Saale), Germany (1)
Department of Applied Chemistry College of Applied Sciences, Kyung Hee University (1)
Department of Biomedical Science and Technology, Kyung Hee Medical Science Research Institute, Kyung Hee University, Seoul, South Korea (1)
Department of Cardiovascular & Metabolic Sciences, Cleveland Clinic Foundation, USA (1)
Department of Cell and Molecular Biology, College of Medicine, Chang Gung University, Taoyuan, Taiwan (1)
Department of Chemistry, Chair of Organic Chemistry II, Technical University of Munich, Germany (1)
Department of Dermatology, Stanford School of Medicine, Stanford University (1)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center (1)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA (1)
Department of Internal Medicine, School of Medicine, Kyungpook National University, Kyungpook National University Hospital, Daegu, Republic of Korea (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905, USA (1)
Department of Laboratory Medicine, UCSF (1)

Tags

xref:PubMed:23577827 (2)

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X chromosome dosage compensation via enhanced transcriptional elongation in Drosophila males (Untreated)

MSL (Male-specific lethal) complex increases transcription on the single X chromosome of Drosophila males in order to equalize expression of X-linked genes between males (XY) and females (XX). The increase in transcript levels correlates with MSL- dependent acetylation of histone H4 at K16 within th...

ORGANISM(S): Drosophila melanogaster

2010-12-22 | E-GEOD-25321 | biostudies-arrayexpress

The Secretome of Liver X Receptor Agonist Treated Early Outgrowth Cells Decreases Atherosclerosis in Ldlr-/- Mice

Endothelial progenitor cells (EPCs) promote the maintenance of the endothelium by secreting vasoreparative factors. A population of EPCs known as early outgrowth cells (EOCs) are being investigated as novel cell-based therapies for the treatment of cardiovascular disease. We previously demonstrated ...

ORGANISM(S): Mus musculus (Mouse)

2021-09-09 | PXD021993 | Pride

Pinhole X-ray fluorescence imaging of gadolinium and gold nanoparticles using polychromatic X-rays: a Monte Carlo study.

Not available

S-EPMC5565259 | biostudies-literature

X Chromosome of female cells shows dynamic changes in status during human somatic cell reprogramming.

Not available

S-EPMC4050354 | biostudies-literature

Transcription profiling of human 48 clinical breast cancer arrays to perform statistical identification of gene association by CID in application of constructing ER regulatory network

A variety of high-throughput techniques are now available for constructing comprehensive gene regulatory networks in systems biology. In this study, we report a new statistical approach for facilitating in silico inference of regulatory network structure. The new measure of association, coefficient ...

ORGANISM(S): Homo sapiens

2009-07-19 | E-GEOD-17041 | biostudies-arrayexpress

Sialylated Lewis x antigen bearing glycoproteins in human plasma.

Not available

S-EPMC2976037 | biostudies-literature

X-ray photonic microsystems for the manipulation of synchrotron light.

Not available

S-EPMC4432626 | biostudies-literature

The characteristics of genome-wide DNA methylation in naM-CM-/ve CD4+ T cells of patients with psoriasis and atopic dermatitis

Psoriasis and atopic dermatitis (AD) are characterized by polarized CD4+ T cell responses. During the polarization of naM-CM-/ve CD4+ T cells, DNA methylation plays an important role in the regulation of gene transcription. In this study, we profiled the genome-wide DNA methylation status of naM-CM-...

ORGANISM(S): Homo sapiens

2012-03-17 | E-GEOD-35582 | biostudies-arrayexpress

Feasibility of combination of Gun-Chil-Jung and cytokine-induced killer cells-based immunotherapy for terminal hepatocellular carcinoma patient: a case report.

Not available

S-EPMC10502300 | biostudies-literature

Ultrafast photonic micro-systems to manipulate hard X-rays at 300 picoseconds.

Not available

S-EPMC6411987 | biostudies-literature

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1580 Results

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