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TranscriptomicsIdentification of target genes of ABI3 [Agilent 44k]
ABI3 is a key regulator of seed development in Arabidopsis and other plants.To identify genes regulated by ABI3 we performed array based transcriptome analysis of Dexamethasone inducible ABI3 transgenic seedlings. ABI3 mostly in concert with abscisic acid (ABA) was found to activate genes specifical...
ORGANISM(S): Arabidopsis thaliana 
2012-05-31 | E-GEOD-33951 | biostudies-arrayexpress
TranscriptomicsIdentification of LEC1 target genes
The transcription factor (TF) LEAFY COTYLEDON1 (LEC1) acts as an essential regulator of Arabidopsis embryogenesis and seed development. It controls aspects of early embryogenesis such as cotyledon identity and suspensor morphology, as well as seed maturation processes such as storage compound accumu...
ORGANISM(S): Arabidopsis thaliana 
2012-03-30 | E-GEOD-22352 | biostudies-arrayexpress
TranscriptomicsLEC1::GR induction: Establishing the network of seed gene expression and analysis of its biodiversity
lec1::gr induction - Identification of LEC1 target genes - Induction of 14 days old LEC1::GR seedlings , different treatments (EtOH, DEX, DEX+ABA, induction) for 8 hours 6 dye-swap - CATMA arrays
ORGANISM(S): Arabidopsis thaliana 
2011-08-30 | E-GEOD-22173 | biostudies-arrayexpress
TranscriptomicsWild type Lec1 transgene induction by DEX: Establishing the network of seed gene expression and analysis of its biodiversity (wt dex induction)
wt dex induction - Identification of LEC1 target genes - Induction of 14 days old WT seedlings , different treatments ( EtOH, DEX induction) for 8 hours 2 dye-swap - CATMA arrays
ORGANISM(S): Arabidopsis thaliana 
2011-08-30 | E-GEOD-22059 | biostudies-arrayexpress
Transcriptomicswt dex induction-Establishing the network of seed gene expression and analysis of its biodiversity
tri33-lec1 - wt dex induction - Identification of LEC1 target genes - Induction of 14 days old WT seedlings , different treatments ( EtOH, DEX induction) for 8 hours 2 dye-swap - treated vs untreated comparison
ORGANISM(S): Arabidopsis thaliana 
2012-03-26 | E-GEOD-36628 | biostudies-arrayexpress
GenomicsComprehensive Transcriptional Analysis of Early Stage Urothelial Carcinoma using whole transcriptome sequencing
The expression profile and sequence variants of 476 early stage urothelial carcinoma were studied using whole transcriptome sequencing. RNA-Seq libraries were prepared by Ribo-Zero treatment of total-RNA followed by library preparation using ScriptSeq (both Epicentre/Illumina). RNA-Seq libraries wer...
EGAS00001001236 | EGA
GenomicsUromol_RNA_Dataset_vcf - samples
Variants derived from mapped whole transcriptome RNA-Seq data from 476 human samples of early stage urothelial carcinoma.
EGAD00001001941 | EGA
GenomicsUromol_RNA_Dataset_map - samples
Mapped whole transcriptome RNA-Seq data from 476 human samples of early stage urothelial carcinoma.
EGAD00001001939 | EGA
GenomicsUromol_RNA_Dataset_unmap - samples
Un-mapped whole transcriptome RNA-Seq data from 476 human samples of early stage urothelial carcinoma.
EGAD00001001940 | EGA
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