Kegg - OmicsDI

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Unknown (18284)
Genomics (3202)
Proteomics (1793)
Transcriptomics (1652)
Metabolomics (749)
Methylation profiling (30)
Other (26)
Models (9)
Clinical (2)
Genomic (1)

Organisms

Homo sapiens (792)
Mus musculus (463)
Rattus norvegicus (123)
Bos taurus (71)
Sus scrofa (55)
Gallus gallus (42)
Danio rerio (37)
Ovis aries (23)
Oryza sativa (13)
Triticum aestivum (8)
Toxoplasma gondii (8)
Oryza sativa Indica Group (7)
Macaca mulatta (7)
Drosophila melanogaster (6)
Anguilla anguilla (5)
Boehmeria nivea (4)
Macrobrachium nipponense (4)
Manihot esculenta (4)
Arachis hypogaea (4)
Equus caballus (4)
Apis mellifera (4)
Salmo salar (4)
Escherichia coli (4)
Hevea brasiliensis (2)
Bemisia tabaci (2)
Euglena gracilis (2)
mouse gut metagenome (2)
mixed sample (2)
Eukaryota (1)
Mammalia (1)

Organisms

Homo sapiens (703)
Mus musculus (463)
Rattus norvegicus (124)
Bos taurus (61)
Sus scrofa (49)
Danio rerio (36)
Gallus gallus (33)
Ovis aries (18)
Capra hircus (14)
Oryza sativa (10)
Brassica napus (8)
Caenorhabditis elegans (8)
Oncorhynchus mykiss (8)
Canis lupus familiaris (8)
Bos grunniens (7)
Zea mays (7)
human gut metagenome (7)
Cervus nippon (6)
Brassica rapa subsp. pekinensis (6)
Drosophila melanogaster (6)
Toxoplasma gondii (6)
Arabidopsis thaliana (6)
Staphylococcus aureus (6)
soil metagenome (6)
Nicotiana benthamiana (5)
Cucumis sativus (5)
Nicotiana tabacum (5)
Macaca mulatta (5)
Bombyx mori (5)
Gossypium hirsutum (4)

Repository

ENA (2960)
geo (1610)
pride (1487)
MetaboLights (743)
biostudies-arrayexpress (341)
iProX (273)
MassIVE (17)
BioModels (9)
jPOST (7)
GNPS (5)
NODE (5)
EGA (2)
PanoramaPublic (2)
dbGaP (1)
PAXDB (1)
PeptideAtlas (1)

Tissue

Cell culture (282)
Brain (81)
Leaf (74)
Epithelial cell (68)
Whole body (60)
Plant cell (58)
Liver (55)
Blood plasma (39)
Heart (35)
Permanent cell line cell (31)
Blood serum (30)
Lung (30)
Root (29)
Macrophage (25)
Blood cell (25)
Skin (23)
Blood (22)
Colon (20)
Kidney (19)
Stem cell (18)
Cell suspension culture (17)
Hepatocyte (17)
Testis (15)
Bone marrow (14)
Primary cell (14)
T cell (14)
Retina (12)
Fibroblast (12)
Pancreas (6)
Peripheral blood mononuclear cells (1)

Disease

Disease free (40)
Breast cancer (18)
Type 2 diabetes mellitus (12)
Colon cancer (12)
Cardiovascular system disease (11)
Wounds and Injuries (9)
Acute leukemia (8)
Myopia (7)
Alzheimer's disease (7)
Pancreatic cancer (5)
Non-small cell lung carcinoma (5)
Melanoma (5)
Cerebrovascular disease (4)
Brain glioblastoma multiforme (4)
Mixed disorder as reaction to stress (4)
Brain cancer (4)
Amyotrophic lateral sclerosis (4)
Diabetes mellitus (3)
Leukoencephalopathy with vanishing white matter (3)
Skin melanoma (3)
Prostate adenocarcinoma (3)
Multiple myeloma (3)
Lymphoma (3)
Inflammatory bowel disease (3)
Head and neck squamous cell carcinoma (3)
Normal (2)
Cancers such as hepatocellular carcinoma, breast cancer, colorectal cancer and related gastrointestinal cancers, urologic cancers including prostate cancer, pancreas cancer, and lung cancer), on which a significant therapeutic efficacy of Huaier has been reported. Special remarks is emphasized on the cancer cases designated to be related to cancer stem cells (2)
Critical chronic obstructive pulmonary disease (1)
SS2-infected (1)
Dermatomyositis (1)

Technology Type

Mass Spectrometry (1487)
Shotgun proteomics (882)
Mass spectrometry (452)
Bottom-up proteomics (294)
Mass spectrometry assay (283)
Data-dependent acquisition (136)
Data-independent acquisition (117)
Top-down proteomics (55)
SWATH MS (47)
Affinity purification coupled with mass spectrometry proteomics (43)
Gel-based experiment (29)
All-ion fragmentation (12)
Mass spectrometry imaging (9)
HDMSE (9)
NMR spectroscopy (8)
Metaproteomics (8)
Proteogenomics (8)
DiaPASEF (8)
Affinity proteomics (6)
Chemical cross-linking coupled with mass spectrometry proteomics (6)
MSE (4)
SRM/MRM (4)
ILLUMINA, Illumina HiSeq 2500 (1)
NMR spectroscopy assay (1)
Immunopeptidomics (1)

Instrument Platform

Illumina NovaSeq 6000 (13)
Illumina HiSeq 2000 (11)
NextSeq 500 (6)
Illumina HiSeq 2500 (4)
Complete Genomics (2)
DNBSEQ-T7 (2)
Illumina HiSeq 4000 (2)
Illumina HiSeq 2000 platform (1)
NanoDrop 2000 Spectrophotometer, Agilent 2100 Bioanalyzer (1)
VAHTS Universal V6 RNA-seq Library Prep Kit for Illumina (Vazyme); manual library preparation (1)
Agilent 2200 TapeStation system; centrifuge; Trizol reagent (1)
Flow cytometer (for CD146+/- cell sorting) (1)
Genomics Core Shared Resources at Augusta University (RRID: SCR_026483) (1)
RNeasy Mini Kit (Qiagen) (1)
GentleMACS Octo Dissociator with Heaters (Miltenyi Biotec, Cat. No. 130-096-427) together with the Human Tumor Dissociation Kit (Miltenyi Biotec, Cat. No. 130-095-929), (1)
Computer (1)
Ilumina HiScan H166 (1)
Geniom RT Analyzer (1)
Geniom (1)
Beckman Optima L-90K (1)
NanoDrop ND-2000 (Thermo Scientific),Agilent Bioanalyzer 2100 (1)
Illumina HiScanSQ (1)
ScanArray Lite [PerkinElmer] (1)
Agilent Scanner G2505C (1)
- (1)
R (1)
BGISEQ-500 (1)
HiSeq X Ten (1)
Illumina MiSeq (1)
Illumina HiSeq 1500 (1)

Publication Date

2025 (681)
2026 (617)
2022 (517)
2021 (439)
2024 (423)
2023 (374)
2020 (294)
2019 (231)
2018 (173)
2017 (122)
2015 (102)
2016 (99)
2014 (80)
2013 (66)
2012 (50)
2010 (42)
2011 (26)
2009 (17)
2008 (13)
2007 (7)
2005 (6)
2027 (2)

UNIPROT ID/AC

P30613 (3)
P36871 (3)
P06744 (3)
P06733 (3)
P09104 (3)
P13929 (3)
O00757 (3)
P09467 (3)
P35575 (3)
P35558 (3)
Q16851 (3)
P00558 (3)
P18669 (3)
P60174 (3)
P11498 (3)
P06737 (3)
P11177 (3)
P08559 (3)
P10515 (2)
P01275 (2)
Q96G03 (2)
P54840 (2)
Q16822 (2)
Q15181 (2)
P17858 (2)
P35557 (2)
O75390 (2)
P11168 (2)
P16118 (2)
P05062 (2)

ENSEMBL ID

ENSMUSG00000027651 (1)
ENSMUSP00000141097 (1)

CHEBI ID

CHEBI:15741 (88)
CHEBI:16027 (71)
CHEBI:17053 (62)
CHEBI:15843 (60)
CHEBI:16761 (45)
CHEBI:17659 (38)
CHEBI:4170 (5)
CHEBI:4167 (5)
CHEBI:15377 (5)
CHEBI:15351 (5)
CHEBI:15346 (5)
CHEBI:29052 (5)
CHEBI:15996 (5)
CHEBI:17552 (5)
CHEBI:15422 (5)
CHEBI:16908 (5)
CHEBI:16526 (5)
CHEBI:15846 (5)
CHEBI:16108 (5)
CHEBI:18357 (4)
CHEBI:15713 (4)
CHEBI:28602 (4)
CHEBI:17835 (4)
CHEBI:17794 (4)
CHEBI:16001 (4)
CHEBI:35366 (3)
CHEBI:17544 (3)
CHEBI:9532 (3)
CHEBI:422 (3)
CHEBI:29042 (3)

Metabolite Name

Hypoxanthine (181)
Inosine (176)
Adenine (173)
Uridine (167)
Guanosine (164)
Uracil (158)
L-Tyrosine (152)
Adenosine (150)
Guanine (150)
Xanthine (150)
Creatine (149)
L-Phenylalanine (145)
L-Tryptophan (144)
L-Histidine (141)
Taurine (140)
Creatinine (136)
Choline (129)
Indole (127)
Riboflavin (127)
Azelaic acid (127)
L-Glutamine (125)
Xanthosine (124)
Cytosine (122)
Cytidine (121)
Thymidine (120)
Uric acid (119)
Betaine (118)
Thymine (117)
Palmitic acid (113)
L-Proline (113)

First Public Date

2024 (409)
2025 (403)
2026 (396)
2022 (324)
2023 (298)
2021 (288)
2020 (256)
2019 (171)
2014 (111)
2018 (100)
2017 (75)
2015 (49)
2016 (46)
2013 (32)
2012 (2)

Modelling Approach

Ordinary differential equation model (4)
Constraint-based model (3)
Other (1)

Study status

Recruiting (2)

Lab affiliation

Affiliated Eye Hospital of Shandong University of Traditional Chinese Medicine (7)
Huazhong Agricultural University (6)
First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China (5)
Shenzhen People’s Hospital (5)
State Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu Province 730046, PR China (5)
Zhejiang University (5)
Shandong University (5)
1 Department of Cardiac Surgery, Fujian Medical University Union Hospital, Fuzhou, China 2 Department of Toxicology, Fujian Center for Evaluation of New Drug, Fujian Medical University, Fuzhou, China (4)
1VIB-UGent Center for Medical Biotechnology, VIB, 9052 Ghent, Belgium 2Department of Biomolecular Medicine, Ghent University, 9052 Ghent, Belgium (4)
South China Agricultural University (4)
Zhejiang Academy of Agricultural Sciences (4)
Kyungpook national university (4)
Emmy-Noether Research Group Cellular Proteomics and Metabolic Signaling Institute for Diabetes and Obesity Helmholtz Diabetes Center Germany (4)
Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China (4)
Key Lab of Integrated Crop Pest Management of Shandong, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao, China (4)
Shenyang Agricultural University (4)
Shandong Agricultural University (4)
Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland (3)
Department of Orthopedic Surgery, Sir Run Run Shaw Hospital, Medical College of Zhejiang University, Hangzhou City, China. (3)
UFIEC, Chronic Disease Programme, Functional Proteomics Unit, Instituto de Salud Carlos III (3)
Tianjin Medical University General Hospital (3)
Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences (3)
College of Agronomy, Qingdao Agricultural University, Qingdao Shandong, China (3)
Agronomy College, Henan Agricultural University, China (3)
Department of Biomedical Sciences, University of Sassari, Italy (3)
Sichuan Agricultural University (3)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (3)
Soochow University (3)
The Fifth Affiliated Hospital of Guangzhou Medical University (3)
University of Washington (3)

IsPrivate

False (9)

Model Flag

Non Kinetic (4)

Submitter Keywords

FROG (2)
Not Peer Reviewed (1)

Classification

bacteria (30)
fungi (8)
protozoa (6)
helminths (3)
viruses (1)

Modification

6x(2)H labeled dimethylated L-arginine (2)
2x(15)N labeled L-lysine (1)
57.02146 (1)
15.99491 (1)
4x(15)N labeled L-arginine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (190)
RNA-seq of coding RNA (108)
RNA-seq of non coding RNA (16)
DNA-seq (5)
Animal - High-throughput sequencing (3)
RNA-seq of total RNA (3)
Transcription profiling by SAGE (2)
Comparative genomic hybridization by array (2)
Other (2)
Methylation profiling by array (2)
Interventional (2)
Unknown experiment type (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
Bisulfite-seq (1)
MicroRNA profiling by array (1)
Proteomic profiling by array (1)

Release Date

2022 (3561)
2023 (2491)
2021 (2370)
2025 (2328)
2024 (2061)
2020 (1578)
2019 (999)
2018 (660)
2017 (574)
2016 (437)
2015 (362)
2014 (277)
2013 (252)
2026 (204)
2012 (162)
2011 (92)
2010 (80)
2009 (48)
2008 (43)
2007 (22)
2006 (9)
2005 (8)
2004 (5)
2003 (1)
2001 (1)

Location

Japan (2)

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Koenig2012 - Hepatic Glucose Metabolism

Quantifying the Contribution of the Liver to Glucose Homeostasis: A Detailed Kinetic Model of Human Hepatic Glucose Metabolism Kinetic Model of Human Hepatic Glucose Metabolism Authors Matthias Koenig, Sasc...

2005-01-01 | MODEL1204270001 | BioModels

Koenig2012 - Hepatic Glucose Metabolism

Kinetic Modeling of Human Hepatic Glucose Metabolism in Type 2 Diabetes Mellitus Predicts Higher Risk of Hypoglycemic Events in Rigorous Insulin Therapy* Kinetic Model of Human Hepatic Glucose Metabolism in T2DM Authors ...

2005-01-01 | MODEL1209260000 | BioModels

PA up-regulates the KEGG pathway ‘Lysosome’ in cultured PTECs

PRJNA790618 | ENA

Comparative Analysis of Proteomes of a Number of Nosocomial Pathogens by KEGG Modules and KEGG Pathways.

Not available

S-EPMC7660090 | biostudies-literature

Metabolomics reveals molecular signatures for psoriasis biomarkers and drug targets discovery

Psoriasis is a chronic skin disease that affects multiple systems and can be influenced by immunological, environmental, and genetic factors. The discovery of plasma biomarkers of psoriasis and the regulation of metabolic pathways helps us understand psoriasis and may assist clinicians in the diagno...

2024-09-26 | MTBLS5185 | MetaboLights

KEGG Mapper for inferring cellular functions from protein sequences.

Not available

S-EPMC6933857 | biostudies-literature

The proteins of PK-15 cells infected with porcine parvovirus were identified and quantitatively analyzed by TMT labeling at 6 h and 36 h after infection, and the results were analyzed by gene ontology, KEGG and PPI bioinformatics.

In this project, TMT labeling quantitative proteomics technology was used to carry out the research, and a total of 4769 proteins were identified. The differentially expressed proteins were screened according to the criteria that the expression multiple changed more than 1.5 times (up-regulated more...

ORGANISM(S): Sus scrofa domesticus (domestic pig)

2024-04-25 | PXD050764 | Pride

The KEGG resource for deciphering the genome.

Not available

S-EPMC308797 | biostudies-literature

KEGG_Extractor: An Effective Extraction Tool for KEGG Orthologs.

Not available

S-EPMC9956942 | biostudies-literature

KEGG proteins absolute quantification

Proteins involved in various pathways (KEGG) were selected and quantified. Cell line mix (including HeLa cells) was used as analyte.

ORGANISM(S): Homo Sapiens (human)

2018-11-18 | PXD008236 | JPOST Repository

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