Kelly D D - OmicsDI

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Unknown (3657)
Transcriptomics (331)
Proteomics (179)
Genomics (104)
Metabolomics (71)
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Genomic (2)
Multiomics (2)
Other (1)

Organisms

Homo sapiens (220)
Mus musculus (89)
Meleagris gallopavo (10)
Saccharomyces cerevisiae (9)
Actinobacillus pleuropneumoniae (7)
Trypanosoma brucei (7)
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Canis lupus familiaris (7)
Thermotoga maritima MSB8 (5)
Caldicellulosiruptor saccharolyticus (5)
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Geobacter sulfurreducens KN400 (1)
Caldicellulosiruptor kronotskyensis (1)
Thermotoga maritima (1)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (1)
Thermotoga petrophila (1)

Organisms

Homo sapiens (2)
Saccharomyces cerevisiae (1)
Ovis aries (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (352)
MassIVE (95)
pride (77)
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geo (3)
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Tissue

Cell culture (25)
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Blood (5)
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Stigma (1)
Culture condition:anaerobically-grown cell (1)
Inner medullary collecting duct (1)
Choroid (1)
Choroidal cell of the eye (1)
Vestibular hair cell (1)
Inner ear vestibulum (1)
Protonema (1)
Gametophore (1)
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Disease

Chronic myeloid leukemia (3)
Breast cancer (3)
Pancreatic ductal carcinoma (3)
Malignant neoplasm of ovary (3)
Gray platelet syndrome (2)
CAMN (1)
Chronic granulomatous disease (1)
IRAK-4 Q293X mutation (1)
Melanoma (1)
Normal (1)
Neuroblastoma (1)
Not Available (1)
High Grade Ovarian Serous Adenocarcinoma (1)
Degeneration of macula and posterior pole (1)
Immunoglobulin light chain amyloidosis (1)
Carcinoma (1)
Skin melanoma (1)
Skin cancer (1)
Hepatocellular carcinoma (1)
Adult respiratory distress syndrome (1)
Cervix carcinoma (1)
Cardiovascular system disease (1)
Respiratory syncytial virus infectious disease (1)
Pancreatic cancer (1)
Parkinson's disease (1)
Alzheimer's disease (1)
Disease free (1)

Technology Type

Mass Spectrometry (77)
Shotgun proteomics (45)
Bottom-up proteomics (14)
Mass spectrometry (12)
Affinity purification coupled with mass spectrometry proteomics (9)
Data-independent acquisition (6)
Data-dependent acquisition (6)
DiaPASEF (5)
Gel-based experiment (5)
SWATH MS (4)
Illumina HiSeq 2000 (3)
Mass spectrometry assay (3)
HDMSE (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, ILLUMINA, Illumina HiSeq 2500 (1)
ABI_SOLID, Illumina Genome Analyzer IIx, Affymetrix_GenomeWide_SNP6.34 (1)
NMR spectroscopy assay (1)
Proteogenomics (1)
All-ion fragmentation (1)
SRM/MRM (1)

Instrument Platform

LTQ Orbitrap Velos (59)
GC-MS (21)
GC MS (12)
Orbitrap Fusion Lumos (10)
Illumina HiSeq 2500 (6)
LTQ Orbitrap (6)
Illumina HiSeq 2000 (5)
NextSeq 500 (4)
Synapt XS (4)
BGISEQ-500 (3)
Illumina NovaSeq 6000 (3)
6510 Quadrupole Time-of-Flight LC/MS (3)
Illumina Genome Analyzer IIx (2)
Illumina Genome Analyzer II (2)
NextSeq 2000 (2)
In-house built IMS-MS with Agilent TOF MS (2)
Agilent 7890A GC with 5975C inert XL MSD (2)
10x Chromium Controller (1)
MoFlo XDP (beckmancoulter) (1)
Other (1)
G2505A DNA microarray scanner [Agilent] (1)
GenePix 4000B [Axon Instruments] (1)
Scanning hardware (1)
NA (1)
Illumina (1)
Illumina MiSeq (1)
Illumina HiSeq 3000 (1)
6110 Quadrupole LC/MS (1)
LTQ Orbitrap Velos Pro (1)
Agilent GC-MS (1)

Publication Date

2016 (70)
2010 (54)
2015 (51)
2013 (49)
2012 (42)
2014 (40)
2011 (30)
2019 (28)
2008 (26)
2022 (24)
2017 (24)
2026 (23)
2018 (23)
2020 (21)
2023 (20)
2024 (19)
2025 (17)
2021 (16)
2009 (10)
2007 (9)
2006 (4)
2005 (2)

UNIPROT ID/AC

Q13465 (2)
Q04743 (2)
Q9P2J2 (2)
Q96DX8 (2)
Q96RV3 (2)
P25105 (2)
Q9NV29 (2)
A8K0R7 (2)
Q969W3 (2)
Q86YS3 (2)
Q6GPH4 (2)
B7ZBB8 (2)
Q99983 (2)
Q9GZY0 (2)
Q969W3-2 (2)
Q6ZUK4 (2)
A8MYZ6 (2)
Q9Y4X4 (2)
Q9UIL8 (2)
Q8IZL2 (2)
P09017 (2)
Q8N6G6 (2)
P01769 (2)
Q6ZUS6 (2)
Q8IVB4 (2)
Q8N2G6 (2)
Q9ULL0 (2)
Q9UIG8 (2)
Q9NYQ8 (2)
Q9H246 (2)

ENSEMBL ID

ENSG00000204131 (2)
ENSG00000147251 (2)
ENSG00000229353 (2)
ENSG00000247315 (2)
ENSG00000170477 (1)

CHEBI ID

CHEBI:35932 (3)
CHEBI:17992 (3)
CHEBI:14314 (3)
CHEBI:15891 (3)
CHEBI:18012 (3)
CHEBI:16704 (3)
CHEBI:17568 (3)
CHEBI:17596 (3)
CHEBI:16737 (3)
CHEBI:17368 (3)
CHEBI:16695 (3)
CHEBI:17626 (2)
CHEBI:28478 (2)
CHEBI:17482 (2)
CHEBI:22652 (2)
CHEBI:17561 (2)
CHEBI:17712 (2)
CHEBI:30763 (2)
CHEBI:16857 (2)
CHEBI:17497 (2)
CHEBI:18066 (2)
CHEBI:17895 (2)
CHEBI:16828 (2)
CHEBI:17115 (2)
CHEBI:16643 (2)
CHEBI:18050 (2)
CHEBI:17295 (2)
CHEBI:15603 (2)
CHEBI:17196 (2)
CHEBI:16977 (2)

Metabolite Name

Hydroxyisocaproic acid (3)
Isovaleric acid (3)
Citric acid (3)
Valeric acid (3)
Serine (3)
GMP (3)
Hypoxanthine (3)
NAD (3)
Taurine (3)
Pyroglutamic acid (3)
Acetic acid (3)
Propionic acid (3)
Xanthine (3)
Sucrose (3)
Hexanoic acid (2)
Butyric acid (2)
Galactonic acid (2)
3-Methyl-2-oxovaleric acid (2)
Acetoin (2)
Taurodeoxycholic acid (2)
Isobutyric acid (2)
Heptanoic acid (2)
Octanoic acid (2)
Ketoleucine (2)
2-Hydroxy-3-methylbutyric acid (2)
Cellobiose (2)
Kynurenic acid (2)
Fumaric acid (2)
Nonanoic acid (2)
Decanoic acid (2)

First Public Date

2024 (2)
2014 (2)
2025 (1)
2020 (1)
2013 (1)

Modelling Approach

Random forest procedure (1)
Ordinary differential equation model (1)

Lab affiliation

Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (7)
Cancer Research UK Beatson Institute, Glasgow, UK (2)
Head of Proteomics, Beatson Institute for Cancer Research (2)
Department of Biological Sciences, Seoul National University, Seoul, Republic of Korea (2)
Human Health Therapeutics, National Research Council of Canada (2)
Wellcome Centre for Cell Biology, University of Edinburgh (2)
Utrecht University (2)
University of Dundee (2)
Lab Head of Systems Oncology lab at CRUK Manchester Institute (1)
Lab head of System Oncology lab at CRUK Manchester Institute (1)
Lab head of the Systems Oncology group at CRUK MI. (1)
Lab Head Systems Oncology group at CRUK Manchester Institute (1)
Lab head Systems Oncology group at CRUK Manchester Institute (1)
Bioinformatics, TruDiagnostic, USA (1)
WTCCB, University of Edinburgh, Edinburgh, UK (1)
Department of Chemistry & Chemical Biology, Northeastern University, Boston, MA, USA (1)
Stoller Biomarker Discovery Centre, University of Manchester, United kingdom (1)
Duke University, Albert Eye Research Institute (1)
Crop Genetics John Innes Centre Norfolk United Kingdom (1)
Department of Microbiology & Immunology Stanford University School of Medicine (1)
Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah, United States of America (1)
Department of Urology, Zhongnan Hospital of Wuhan University, Wuhan 430071, China Frontier Science Center for Immunology and Metabolism, Medical Research Institute, Wuhan University, Wuhan 430071, China (1)
Department of Cellular and Molecular Pharmacology, University of California San Francisco (1)
The Francis Crick Institute 1 Midland Road London, NW1 1AT UK (1)
Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84602 (1)
Kelly: Diabetes and Obesity Research Center, Sanford-Burnham Medical Research Institute, Orlando, Florida, USA. Coon: Department of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA Department of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA Genome Center, University of Wisconsin-Madison, Madison, WI 53706, USA (1)
Institute of Biochemistry Medical Faculty University of Cologne Germany (1)
Dr. Gerhard Mittler Group Leader Proteomics Unit MPI Immunobiology and Epigenetics Stuebeweg 51 D-79108 Freiburg, Germany Phone: +49 (0)761 5108 712 (1)
International Institute of Molecular and Cell biology, Warsaw, Poland (1)
Department of Biology, Washington and Lee University (1)

IsPrivate

False (2)

Submitter Keywords

Machine Learning Model (1)
TransQST (1)

Study type

Transcription profiling by array (236)
RNA-seq of coding RNA (38)
ChIP-seq (16)
ChIP-chip by tiling array (7)
Transcription profiling by RT-PCR (6)
Methylation profiling by high throughput sequencing (6)
Transcription profiling by tiling array (4)
ChIP-chip by array (4)
Genotyping by array (4)
RNA-seq of coding RNA from single cells (4)
Unknown experiment type (3)
Comparative genomic hybridization by array (3)
Other (3)
RNA-seq of non coding RNA (3)
Cell line - High-throughput sequencing (2)
RNAi profiling by array (2)
Methylation profiling by array (2)
Human - High-throughput sequencing (1)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
4C (1)
ATAC-seq (1)
MicroRNA profiling by array (1)
DNA-seq (1)
RNA-seq of total RNA (1)

Release Date

2022 (449)
2021 (408)
2023 (377)
2024 (367)
2025 (364)
2020 (285)
2019 (232)
2016 (180)
2018 (179)
2015 (167)
2017 (158)
2014 (158)
2013 (132)
2010 (116)
2012 (107)
2011 (106)
2008 (58)
2026 (51)
2009 (49)
2007 (20)
2006 (15)
2005 (12)
1998 (5)
2004 (3)
1999 (3)
2003 (2)
2002 (2)
2001 (2)
2000 (1)

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Gene Expression Analysis of the Neuroblastoma Kelly Cell Line

Gene expression profililing of the MYCN-amplified Kelly cell line

ORGANISM(S): Homo sapiens

2011-06-18 | E-MEXP-3121 | biostudies-arrayexpress

Characterisation of the whole blood mRNA transcriptome in Holstein-Friesian and Jersey calves in response to gradual weaning

The objectives of the study were to use RNA-Seq to examine the effect of (i) breed and (ii) gradual weaning, on the whole blood mRNA transcriptome of artificially reared Holstein-Friesian and Jersey calves. The calves were gradually weaned over 14 days (day (d) -13 to d 0) and mRNA transcription was...

ORGANISM(S): Bos taurus

2016-08-19 | E-GEOD-76841 | biostudies-arrayexpress

Transcription profiling by array of human Kelly cells following transfection with PremiR to miR542-5p compared to a negative control

Gene expression profiling of Kelly cells following transfection with PremiR to miR542-5p compared to negative control

ORGANISM(S): Homo sapiens

2011-02-01 | E-MEXP-2895 | biostudies-arrayexpress

Identification of MEIS2 binding sites through ChIP-seq in the neuroblastoma Kelly and BE(2)-C cell lines.

In total, 100x106 SK-N-BE(2)-C and Kelly neuroblastoma cells were processed for ChIP-sequencing. Briefly, pellets were prepared by fixing cells in 1% formaldehyde for 15 minutes, and quenching in 1M Tris pH 7.5. Nuclei were prepared using the Sigma Nuclei Isolation Kit (#NUC-101), and sonicated usin...

ORGANISM(S): Homo sapiens

2022-04-14 | E-MTAB-10620 | biostudies-arrayexpress

Circulating levels of maternal vitamin D and risk of ADHD in offspring: results from the Vitamin D Antenatal Asthma Reduction Trial.

Not available

S-EPMC9189969 | biostudies-literature

Gene expression profile of Kelly and SH-SY5Y cells after treatment with retinoic acid

Kelly and SH-SY5Y neuroblastoma cells were treated with retinoic acid for 3 days. Gene expression profiles from untreated and treated cells were obtained using microarrays (Clariom D) to analyze the retinoic acid-induced changes.

ORGANISM(S): Homo sapiens

2025-09-26 | GSE262511 | GEO

Gene expression profile of Kelly and SH-SY5Y cells after treatment with retinoic acid

PRJNA1092100 | ENA

Microarray analysis of IL-10 stimulated adherent peripheral blood mononuclear cells

The immune mechanisms that control resistance vs. susceptibility to mycobacterial infection in humans were investigated by studying leprosy skin lesions, the site where the battle between the host and the pathogen is joined. Using an integrative genomics approach, we found an inverse correlation be...

ORGANISM(S): Homo sapiens

2013-03-05 | E-GEOD-43700 | biostudies-arrayexpress

Simultaneous weak measurement of non-commuting observables: a generalized Arthurs-Kelly protocol.

Not available

S-EPMC6202392 | biostudies-literature

Vitamin D3 supplementation in obese, African-American, vitamin D deficient adolescents.

Not available

S-EPMC5992315 | biostudies-literature

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