Kelly D D - OmicsDI

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Unknown (3669)
Transcriptomics (329)
Proteomics (179)
Genomics (102)
Metabolomics (71)
Models (3)
Genomic (2)
Multiomics (2)
Other (1)

Organisms

Homo sapiens (261)
Mus musculus (107)
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Meleagris gallopavo (10)
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Trypanosoma brucei (7)
Geobacter sulfurreducens (7)
Canis lupus familiaris (7)
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Caldicellulosiruptor kronotskyensis (1)
Thermotoga maritima (1)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (1)
Thermotoga petrophila (1)
Camponotus floridanus (1)

Organisms

Homo sapiens (2)
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Saccharomyces cerevisiae (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (348)
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pride (77)
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Tissue

Cell culture (25)
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Culture condition:anaerobically-grown cell (1)
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Disease

Chronic myeloid leukemia (3)
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CAMN (1)
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IRAK-4 Q293X mutation (1)
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Normal (1)
Neuroblastoma (1)
Not Available (1)
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Adult respiratory distress syndrome (1)
Alzheimer's disease (1)
Carcinoma (1)
Cardiovascular system disease (1)
Cervix carcinoma (1)
Degeneration of macula and posterior pole (1)
Disease free (1)
Hepatocellular carcinoma (1)
Immunoglobulin light chain amyloidosis (1)
Pancreatic cancer (1)
Parkinson's disease (1)
Respiratory syncytial virus infectious disease (1)
Skin cancer (1)
Skin melanoma (1)

Technology Type

Mass Spectrometry (77)
Shotgun proteomics (45)
Bottom-up proteomics (14)
Mass spectrometry (12)
Affinity purification coupled with mass spectrometry proteomics (9)
Data-dependent acquisition (6)
Data-independent acquisition (6)
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Gel-based experiment (5)
SWATH MS (4)
Illumina HiSeq 2000 (3)
Mass spectrometry assay (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
HDMSE (2)
ABI_SOLID, Illumina Genome Analyzer IIx, Affymetrix_GenomeWide_SNP6.34 (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, ILLUMINA, Illumina HiSeq 2500 (1)
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Proteogenomics (1)
SRM/MRM (1)

Instrument Platform

LTQ Orbitrap Velos (59)
GC-MS (21)
GC MS (12)
Orbitrap Fusion Lumos (10)
Q Exactive Plus (9)
Illumina HiSeq 2500 (6)
LTQ Orbitrap (6)
Illumina HiSeq 2000 (4)
NextSeq 500 (4)
BGISEQ-500 (3)
Illumina NovaSeq 6000 (3)
6510 Quadrupole Time-of-Flight LC/MS (3)
Illumina Genome Analyzer IIx (2)
Illumina Genome Analyzer II (2)
NextSeq 2000 (2)
Agilent 7890A GC with 5975C inert XL MSD (2)
In-house built IMS-MS with Agilent TOF MS (2)
10x Chromium Controller (1)
MoFlo XDP (beckmancoulter) (1)
Other (1)
G2505A DNA microarray scanner [Agilent] (1)
GenePix 4000B [Axon Instruments] (1)
Scanning hardware (1)
NA (1)
Illumina (1)
Illumina MiSeq (1)
Illumina HiSeq 3000 (1)
6110 Quadrupole LC/MS (1)
Agilent GC-MS (1)
LTQ Orbitrap Velos Pro (1)

Publication Date

2016 (70)
2010 (54)
2015 (51)
2013 (48)
2012 (41)
2014 (40)
2019 (28)
2011 (28)
2008 (26)
2022 (24)
2017 (24)
2026 (23)
2018 (23)
2020 (21)
2023 (20)
2024 (19)
2025 (17)
2021 (16)
2009 (10)
2007 (9)
2006 (4)
2005 (2)

UNIPROT ID/AC

A0A024R563 (2)
A0A024R8H9 (2)
A0A024RAN2 (2)
A0A024RC46 (2)
A0A087WT59 (2)
A0A087WTX5 (2)
A0A087WVW2 (2)
A0A087WWK8 (2)
A0A087WYL9 (2)
A0A087WZE9 (2)
A0A087X130 (2)
A0A087X1V9 (2)
A0A087X232 (2)
A0A0A0MR66 (2)
A0A0A0MS07 (2)
A0A0A0MS51 (2)
A0A0A0MSA7 (2)
A0A0C4DG89 (2)
A0A0C4DGT3 (2)
A0AVT1 (2)
A0FGR8 (2)
A0FGR8-2 (2)
A0FGR8-6 (2)
A0JLT2 (2)
A0JNW5 (2)
A0M8Q6 (2)
A0MZ66 (2)
A0N5G5 (2)
A1IGU5 (2)
A1L020 (2)

ENSEMBL ID

ENSG00000147251 (2)
ENSG00000204131 (2)
ENSG00000229353 (2)
ENSG00000247315 (2)
ENSG00000170477 (1)

CHEBI ID

CHEBI:14314 (3)
CHEBI:15891 (3)
CHEBI:16695 (3)
CHEBI:16704 (3)
CHEBI:16737 (3)
CHEBI:17368 (3)
CHEBI:17568 (3)
CHEBI:17596 (3)
CHEBI:17992 (3)
CHEBI:18012 (3)
CHEBI:35932 (3)
CHEBI:15344 (2)
CHEBI:15354 (2)
CHEBI:15422 (2)
CHEBI:15603 (2)
CHEBI:15676 (2)
CHEBI:15940 (2)
CHEBI:15971 (2)
CHEBI:15996 (2)
CHEBI:16015 (2)
CHEBI:16027 (2)
CHEBI:16119 (2)
CHEBI:16235 (2)
CHEBI:16264 (2)
CHEBI:16414 (2)
CHEBI:16449 (2)
CHEBI:16450 (2)
CHEBI:16643 (2)
CHEBI:16708 (2)
CHEBI:16750 (2)

Metabolite Name

Acetic acid (3)
Citric acid (3)
Glycerophosphocholine (3)
Hydroxyisocaproic acid (3)
Hypoxanthine (3)
Isovaleric acid (3)
L-Leucine (3)
NAD (3)
Propionic acid (3)
Pyroglutamic acid (3)
Sucrose (3)
Taurodeoxycholic acid (3)
Valeric acid (3)
1,7-Dimethylxanthine (2)
16-Hydroxypalmitic acid (2)
2-Hydroxy-3-methylbutyric acid (2)
3-Methyl-2-oxovaleric acid (2)
5'-deoxyadenosine (2)
5-Aminolevulinic acid (2)
ADP (2)
Acetoin (2)
Acetylcholine (2)
Acetylcysteine (2)
Adenine (2)
Adenosine (2)
Ascorbic acid (2)
Betaine (2)
Butyric acid (2)
CMP (2)
Cellobiose (2)

First Public Date

2024 (2)
2014 (2)
2025 (1)
2020 (1)
2013 (1)

Modelling Approach

Ordinary differential equation model (1)
Random forest procedure (1)

Lab affiliation

Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (7)
Cancer Research UK Beatson Institute, Glasgow, UK (2)
Department of Biological Sciences, Seoul National University, Seoul, Republic of Korea (2)
Head of Proteomics, Beatson Institute for Cancer Research (2)
Human Health Therapeutics, National Research Council of Canada (2)
University of Dundee (2)
Utrecht University (2)
Wellcome Centre for Cell Biology, University of Edinburgh (2)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive CCSR 3205b Stanford, CA 94305-5175 (1)
Bioinformatics, TruDiagnostic, USA (1)
Biomolecular Mass Spectrometry and Proteomics, Utrecht University (1)
Brigham Young University (1)
CIR, Queen’s Medical Research Institute, University of Edinburgh (1)
Crop Genetics John Innes Centre Norfolk United Kingdom (1)
Department of Biology, Washington and Lee University (1)
Department of Cellular and Molecular Pharmacology, University of California San Francisco (1)
Department of Chemistry & Chemical Biology, Northeastern University, Boston, MA, USA (1)
Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84602 (1)
Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT 84604 (1)
Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT, USA (1)
Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah, United States of America (1)
Department of Infection Biology, Faculty of Infectious and Tropical Diseases, London School of Hygeine & Tropical Medicine (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA (1)
Department of Microbiology & Immunology Stanford University School of Medicine (1)
Department of Pathology, UAMS, Little Rock, AR, USA 2 The Winthrop P. Rockefeller Cancer Institute, UAMS, Little Rock, AR, USA (1)
Department of Urology, Zhongnan Hospital of Wuhan University, Wuhan 430071, China Frontier Science Center for Immunology and Metabolism, Medical Research Institute, Wuhan University, Wuhan 430071, China (1)
Dr. Gerhard Mittler Group Leader Proteomics Unit MPI Immunobiology and Epigenetics Stuebeweg 51 D-79108 Freiburg, Germany Phone: +49 (0)761 5108 712 (1)
Duke University, Albert Eye Research Institute (1)
Head of Proteomics, CRUK Scotland Institute, Glasgow (1)

IsPrivate

False (2)

Submitter Keywords

Machine Learning Model (1)
TransQST (1)

Study type

Transcription profiling by array (234)
RNA-seq of coding RNA (38)
ChIP-seq (15)
ChIP-chip by tiling array (7)
Transcription profiling by RT-PCR (6)
Methylation profiling by high throughput sequencing (5)
Transcription profiling by tiling array (4)
ChIP-chip by array (4)
Genotyping by array (4)
RNA-seq of coding RNA from single cells (4)
Unknown experiment type (3)
Comparative genomic hybridization by array (3)
Other (3)
RNA-seq of non coding RNA (3)
Cell line - High-throughput sequencing (2)
RNAi profiling by array (2)
Methylation profiling by array (2)
Human - High-throughput sequencing (1)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
4C (1)
ATAC-seq (1)
MicroRNA profiling by array (1)
DNA-seq (1)
RNA-seq of total RNA (1)

Release Date

2022 (449)
2021 (408)
2023 (377)
2024 (371)
2025 (364)
2020 (286)
2019 (232)
2016 (181)
2018 (180)
2015 (167)
2017 (158)
2014 (158)
2013 (131)
2010 (117)
2012 (106)
2011 (105)
2008 (58)
2026 (53)
2009 (50)
2007 (20)
2006 (15)
2005 (12)
1998 (5)
2004 (3)
1999 (3)
2003 (2)
2002 (2)
2001 (2)
2000 (1)

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Gene Expression Analysis of the Neuroblastoma Kelly Cell Line

Gene expression profililing of the MYCN-amplified Kelly cell line

ORGANISM(S): Homo sapiens

2011-06-18 | E-MEXP-3121 | biostudies-arrayexpress

Characterisation of the whole blood mRNA transcriptome in Holstein-Friesian and Jersey calves in response to gradual weaning

The objectives of the study were to use RNA-Seq to examine the effect of (i) breed and (ii) gradual weaning, on the whole blood mRNA transcriptome of artificially reared Holstein-Friesian and Jersey calves. The calves were gradually weaned over 14 days (day (d) -13 to d 0) and mRNA transcription was...

ORGANISM(S): Bos taurus

2016-08-19 | E-GEOD-76841 | biostudies-arrayexpress

Transcription profiling by array of human Kelly cells following transfection with PremiR to miR542-5p compared to a negative control

Gene expression profiling of Kelly cells following transfection with PremiR to miR542-5p compared to negative control

ORGANISM(S): Homo sapiens

2011-02-01 | E-MEXP-2895 | biostudies-arrayexpress

Identification of MEIS2 binding sites through ChIP-seq in the neuroblastoma Kelly and BE(2)-C cell lines.

In total, 100x106 SK-N-BE(2)-C and Kelly neuroblastoma cells were processed for ChIP-sequencing. Briefly, pellets were prepared by fixing cells in 1% formaldehyde for 15 minutes, and quenching in 1M Tris pH 7.5. Nuclei were prepared using the Sigma Nuclei Isolation Kit (#NUC-101), and sonicated usin...

ORGANISM(S): Homo sapiens

2022-04-14 | E-MTAB-10620 | biostudies-arrayexpress

Circulating levels of maternal vitamin D and risk of ADHD in offspring: results from the Vitamin D Antenatal Asthma Reduction Trial.

Not available

S-EPMC9189969 | biostudies-literature

Gene expression profile of Kelly and SH-SY5Y cells after treatment with retinoic acid

Kelly and SH-SY5Y neuroblastoma cells were treated with retinoic acid for 3 days. Gene expression profiles from untreated and treated cells were obtained using microarrays (Clariom D) to analyze the retinoic acid-induced changes.

ORGANISM(S): Homo sapiens

2025-09-26 | GSE262511 | GEO

Gene expression profile of Kelly and SH-SY5Y cells after treatment with retinoic acid

PRJNA1092100 | ENA

Simultaneous weak measurement of non-commuting observables: a generalized Arthurs-Kelly protocol.

Not available

S-EPMC6202392 | biostudies-literature

Vitamin D3 supplementation in obese, African-American, vitamin D deficient adolescents.

Not available

S-EPMC5992315 | biostudies-literature

4C sequencing for the SOX11 promoter in the neuroblastoma cell lines CLB-GA, KELLY, SK-N-AS and SH-EP

4C sequencing for the SOX11 promoter in the neuroblastoma cell lines CLB-GA, KELLY, SK-N-AS and SH-EP.