Kennedy S S - OmicsDI

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Organisms

Drosophila melanogaster (180)
Homo sapiens (113)
Mus musculus (41)
Saccharomyces cerevisiae (12)
Arabidopsis thaliana (8)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (4)
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Steinernema carpocapsae (1)

Organisms

Arabidopsis thaliana (4)
Homo sapiens (4)
Saccharomyces cerevisiae (2)
Mus musculus (2)
Lactuca sativa (1)
Drosophila melanogaster (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (283)
pride (83)
ENA (17)
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Tissue

Epithelial cell (18)
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Schwann cell (1)

Disease

Colon cancer (11)
Breast cancer (3)
Acute leukemia (2)
Brain cancer (2)
Brain glioblastoma multiforme (2)
Optic atrophy 1 (2)
Uveal melanoma (2)
Melanoma (1)
Normal (1)
Not Available (1)
Alzheimer's disease (1)
Avian influenza (1)
Chronic kidney disease (1)
Corneal granular dystrophy (1)
Dilated cardiomyopathy (1)
Disease free (1)
Esophagus adenocarcinoma (1)
Hypomyelinating leukodystrophy 7 with or without oligodontia and-or hypogonadotropic hypogonadism (1)
Influenza (1)
Lattice corneal dystrophy (1)
Lung cancer (1)
Malignant neoplasm of ovary (1)
Neurofibromatosis (1)
Neurofibromatosis 1 (1)
Obesity (1)
Oligodendroglioma (1)
Ovarian serous carcinoma (1)
Parkinson's disease (1)
Plexiform neurofibroma (1)
Skin melanoma (1)

Technology Type

Mass Spectrometry (83)
Shotgun proteomics (39)
Bottom-up proteomics (21)
Affinity purification coupled with mass spectrometry proteomics (16)
Data-dependent acquisition (8)
Mass spectrometry (7)
Data-independent acquisition (5)
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SWATH MS (2)
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SRM/MRM (1)

Instrument Platform

Q Exactive (5)
Illumina HiSeq 3000 (2)
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Liquid Chromatography MS - positive - reverse phase (2)
Covaris, NEBNext Ultra II DNA library prep kit (1)
Flexercell FX-4000C (1)
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LTQ Orbitrap (1)

Publication Date

2013 (141)
2011 (46)
2010 (26)
2012 (21)
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2014 (16)
2026 (14)
2019 (14)
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2016 (12)
2015 (9)
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2018 (7)
2008 (6)
2023 (6)
2009 (5)
2017 (5)
2006 (3)
2005 (2)
2007 (1)

CHEBI ID

CHEBI:16919 (6)
CHEBI:15428 (5)
CHEBI:15891 (5)
CHEBI:16027 (5)
CHEBI:16335 (5)
CHEBI:16610 (5)
CHEBI:25017 (5)
CHEBI:30769 (5)
CHEBI:4170 (5)
CHEBI:15318 (4)
CHEBI:15676 (4)
CHEBI:15978 (4)
CHEBI:16449 (4)
CHEBI:16742 (4)
CHEBI:16750 (4)
CHEBI:17148 (4)
CHEBI:17234 (4)
CHEBI:17345 (4)
CHEBI:17596 (4)
CHEBI:17750 (4)
CHEBI:17768 (4)
CHEBI:17822 (4)
CHEBI:18012 (4)
CHEBI:18132 (4)
CHEBI:18211 (4)
CHEBI:18257 (4)
CHEBI:24898 (4)
CHEBI:26271 (4)
CHEBI:26986 (4)
CHEBI:27266 (4)

Metabolite Name

Creatine (4)
Adenosine (3)
Alanine (3)
Allantoin (3)
Asparagine (3)
Aspartate (3)
Beta-alanine (3)
Citrulline (3)
Glucose 6-phosphate (3)
Glycine (3)
Isoleucine (3)
Ornithine (3)
Phenylalanine (3)
Proline (3)
Putrescine (3)
Spermidine (3)
Taurine (3)
Threonine (3)
Thymidine (3)
Tryptophan (3)
Xanthine (3)
1-methyl-4-imidazoleacetate (2)
1-methyladenosine (2)
1-methylhistamine (2)
1-methylnicotinamide (2)
15-HETE (2)
2'-O-methyluridine (2)
2'-deoxyinosine (2)
2,3-dihydroxyisovalerate (2)
2-aminoadipate (2)

IsPrivate

False (1)

First Public Date

2021 (6)
2024 (3)
2014 (3)
2026 (1)
2022 (1)
2019 (1)
2015 (1)
2013 (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

15.994915 (1)
42.010565 (1)
58.005479 (1)
Not available (1)

Study type

ChIP-seq (127)
Transcription profiling by array (61)
ChIP-chip by tiling array (59)
RNA-seq of coding RNA (12)
Unknown experiment type (7)
RNA-seq of non coding RNA (4)
DNA-seq (3)
Methylation profiling by array (3)
MicroRNA profiling by array (2)
Cell line - One-color microarray (1)
Transcription profiling by tiling array (1)
Comparative genomic hybridization by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (1029)
2021 (962)
2023 (877)
2024 (848)
2025 (838)
2020 (828)
2019 (671)
2018 (537)
2017 (414)
2016 (365)
2015 (354)
2013 (284)
2014 (264)
2011 (172)
2012 (160)
2026 (130)
2010 (123)
2009 (81)
2008 (40)
2006 (20)
2007 (19)
2005 (10)
2004 (5)
2002 (5)
2001 (5)
2003 (4)
1998 (4)
1999 (3)
2000 (2)
1997 (1)

Lab affiliation

Core Facility for Medical Bioanalytics Proteomics Platform Tübingen (PxP) Institute for Ophthalmic Research Eberhard-Karls University of Tuebingen Elfriede-Aulhorn-Str. 7 D-72076 Tuebingen. Germany. (7)
UCSF (4)
Clinical Research Division, Fred Hutchinson Cancer Research Center (2)
Dalhousie University (2)
Department of Biological Sciences, University of Alberta (2)
Division of Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD (2)
Lecturer/Associate Professor, School of Biomolecular and Biomedical Science, UCD Conway Institute, University College Dublin, Belfield, Dublin 4, Ireland (2)
School of Medicine, University College Dublin, Belfield, Dublin 4, Ireland (2)
University of Toronto (2)
1 Princess Margaret Cancer Centre, University Health Network, Toronto, ON M5G 1L7, Canada 2 Department of Molecular Genetics, University of Toronto, Toronto, ON M5S1A5, Canada (1)
Associate Professor Department of Microbiology and Immunology The G.W. Hooper Research Foundation The University of California, at San Francisco 513 Parnassus Ave, HSW 1532, Box 0552 San Francisco, CA 94143 (1)
Baylor College of Medicine, Houston, Texas (1)
Bioinformatic (1)
Breast Center, Baylor College of Medicine, Houston, TX US (1)
Caprion Biosciences, 201 President-Kennedy Ave., Montreal, H2X 3Y7, Quebec, Canada (1)
Clinical Research Division Fred Hutchinson Cancer Research Center (1)
Clinical Research Division, Fred Hutchinson Cancer Center, USA (1)
Clinical Research Division, Fred Hutchinson Cancer Reseaarch Center (1)
Conway Institute Research Fellow Special Lecturer in Clinical Pharmacology School of Medicine, University College Dublin, Belfield, Dublin 4, Ireland. (1)
Core Facility for Medical Bioanalytics Proteomics Platform Tübingen (PxP) Institute for Ophthalmic Research Eberhard-Karls University of Tuebingen Elfriede-Aulhorn-Str. 7 D-72076 Tuebingen. Germany. (1)
Core Facility for Medical Bioanalytics Proteomics Platform Tübingen (PxP) Institute for Ophthalmic Research Eberhard-Karls University of Tuebingen Elfriede-Aulhorn-Str. 7 D-72076 Tuebingen. Germany (1)
DZNE Munich Neuroproteomics Feodor-Lynen-Str. 17 81377 München Germany (1)
Department of Biolofical Sciences, University of Alberta (1)
Department of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (1)
Department of Chemistry, University of Michigan, Ann Arbor, MI 48109 Department of Biological Chemistry, University of Michigan, Ann Arbor, MI 48109 (1)
Department of Genome Sciences, University of Washington, Seattle, USA (1)
Department of Molecular Biology and Genetics (1)
Department of Molecular Biology, Cristea Lab, Princeton University, Princeton, NJ, US (1)
Department of Molecular Biology, Princeton University, USA (1)
Department of Pathology, Gujar Lab, Dalhousie University, Canada (1)

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Microarray analysis of Gene expression in limb muscles of three mouse models of Kennedy disease/SBMA

Emerging evidence implicates transcriptional dyseregulation within skeletal muscle in the pathogenesis of Kennedy disease/spinal bulbar muscular atrophy (KD/SBMA). We therefore broadly characterized gene expression in skeletal muscle of three independently generated mouse models of this disorder. Th...

ORGANISM(S): Mus musculus

2010-10-12 | E-GEOD-10190 | biostudies-arrayexpress

Transcription profiling of neutrophils exposed to S. aureus infection

Neutrophil lysis after phagocytosis is a process potentially important in the pathogenesis of community-associated methicillin-resistant S. aureus (CA-MRSA) infection. The mechanism for this process is not currently known. Therefore, to better understand CA-MRSA virulence we used human oligonucleo...

ORGANISM(S): Homo sapiens

2010-06-09 | E-GEOD-16837 | biostudies-arrayexpress

A Prospective Study of Early Pregnancy Essential Metal(loid)s and Glucose Levels Late in the Second Trimester.

Not available

S-EPMC6736048 | biostudies-literature

Outlining the Complex Pathway of Mammalian Fe-S Cluster Biogenesis.

Not available

S-EPMC8349188 | biostudies-literature

Translational autoregulation of the S. cerevisiae high-affinity polyamine transporter Hol1.

Not available

S-EPMC8500938 | biostudies-literature

S-acylation of SARS-CoV-2 spike protein: Mechanistic dissection, in vitro reconstitution and role in viral infectivity.

Not available

S-EPMC8379822 | biostudies-literature

Genetic diseases of the Kennedy pathways for membrane synthesis.

Not available

S-EPMC7762932 | biostudies-literature

In vitro reconstitution reveals substrate selectivity of protein S-acyltransferases.

Not available

S-EPMC12018989 | biostudies-literature

A Signaling Lipid Associated with Alzheimerâ€™s Disease Promotes Mitochondrial Dysfunction

Fundamental changes in the composition and distribution of lipids within the brain are believed to contribute to the cognitive decline associated with Alzheimerâ€™s disease (AD). The mechanisms by which these changes in lipid composition affect cellular function and ultimately cognition are not well...

ORGANISM(S): Saccharomyces cerevisiae

2016-01-21 | E-GEOD-40814 | biostudies-arrayexpress

Empirical validation of the S-Score algorithm in the analysis of gene expression data.

Not available

S-EPMC1550434 | biostudies-literature

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