Khan I I - OmicsDI

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Transcriptomics (110)
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Organisms

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unidentified (1)
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Organisms

Homo sapiens (2)
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Repository

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pride (39)
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CHEBI ID

CHEBI:17154 (4)
CHEBI:25017 (4)
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CHEBI:15428 (3)
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Metabolite Name

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7-Methylguanine (2)
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IsPrivate

False (1)

Submitter Keywords

Ersilia (1)
Machine Learning Model (1)

First Public Date

2021 (2)
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2023 (1)
2017 (1)

Modelling Approach

Computational model (1)

Study type

Transcription profiling by array (63)
RNA-seq of coding RNA (12)
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Human - High-throughput sequencing (1)
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Release Date

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1999 (1)

Lab affiliation

Department of Chemistry, Imperial College London, Molecular Sciences Research Hub, London, W12 0BZ, UK The Francis Crick Institute, London, NW1 1AT, UK (4)
1 The Rosalind Franklin Institute, Oxfordshire, United Kingdom 2 Department of Pharmacology, University of Oxford (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) School of Life Sciences Technical University of Munich (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
Bristol Myers Squibb (1)
Centre for Targeted Protein Degradation (CeTPD) University of Dundee (1)
Chief Scientist, Professor and Head, Cancer Biology Division CSIR-Central Drug Research Institute & AcSIR, LSS-006 Jankipuram Extension, Lucknow 226031, India (1)
Department for Biochemistry and Molecular Biology University of Southern Denmark Odense, Denmark (1)
Department of Biophysics All India Institute of Medical Sciences New Delhi 110029 India (1)
Department of Cardiovascular and Metabolic Sciences, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH 44195, USA (1)
Department of Chemistry, Imperial College London, Molecular Research Science Hub, 80 Wood Lane, London W12 0BZ, United Kingdom. The Francis Crick Institute, 1 Midland Road, London NW1 1AT, United Kingdom. (1)
Department of Medical Biology, Faculty of Health Sciences, UiT The Arctic University of Norway, Tromsø, Norway (1)
Department of Oncology, Children’s Hospital Zurich, Steinwiesstrasse 75, 8032 Zurich, Switzerland (1)
Department of Physiology and Biophysics, University of Illinois at Chicago (1)
Department of Radiation Oncology, Weill Cornell Medicine, New York, NY, 10065, USA (1)
Division of Pulmonary and Critical Care Medicine Weill Cornell Medicine (1)
Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi-75270, Pakistan (1)
Head of the Department, Proteomics Core Facility (1)
Heidelberg University Hospital (1)
IGBMC, Institut de Génétique et de Biologie Moléculaire et Cellulaire, Illkirch, France, UMR7104, UMR-S 1258. (1)
Icahn School of Medicine at Mount Sinai (1)
Institue of Biochemistry 2, Buchmann institute for Molecular Life Sciences (1)
Institute of Biotechnology, Czech Academy of Sciences, 252 50 Vestec, Prague-West, Czech Republic (1)
Laboratory of Biomedical Technologies, Agenzia Nazionale per le Nuove Tecnologie, l'Energia e lo Sviluppo Economico Sostenibile (ENEA), Rome, Italy (1)
McGill University Department of Pharmacology and Therapeutics Montreal, QC (1)
Mercer University School of Medicine, Department of Medical Sciences (1)
Newcastle University Biosciences Institute, Newcastle University, Newcastle upon Tyne, UK (1)
Radiation Oncology Department Weill Cornell Medicine College 1300 York Avenue, NY, NY 10065 (1)
Radiation Oncology; Weill Cornell medicine College; 1300 York Avenue; 10065, New York, New York, USA (1)
Renmin South Rd. 4-13, Chengdu 610041, China (1)
The Rosalind Franklin Institute, Oxfordshire, United Kingdom Department of Pharmacology, University of Oxford (1)

Tags

xref:PubMed:39885991 (1)
xref:EuropePMC:PMC11519399 (1)
xref:PubMed:34824360 (1)
xref:PubMed:41565868 (1)
xref:PubMed:39468120 (1)
xref:EuropePMC:PMC12913226 (1)

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Global gene expression differences between GT1, RH-ERP2009 and RH-JSR

Previous studies have shown that continuous in vitro passage can result in changes to the global gene expression profiles in mammalian cells. To examine the extent of gene expression differences between highly homologous type I strains, we took advantage of the T. gondii Affymetrix microarray conta...

ORGANISM(S): Toxoplasma gondii

2010-06-20 | E-GEOD-16115 | biostudies-arrayexpress

Methanol extract of Iphiona aucheri ameliorates CCl₄ induced hepatic injuries by regulation of genes in rats.

Not available

S-EPMC8142630 | biostudies-literature

Human foreskin fibroblasts (HFFs) infected with type I strains of Toxoplasma gondii

This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

ORGANISM(S): Toxoplasma gondii

2013-08-20 | E-GEOD-44246 | biostudies-arrayexpress

Parasite gene expression differences between RH-ERP, RH-JSR and GT1 of Toxoplasma gondii.

Parasite gene expression differences have been reported previously between RH-ERP, RH-JSR and GT1. To independently confirm these gene expression differences, we examined the parasite gene expression profiles of RH-ERP, RH-JSR and GT1 through microarray. Three type I strains of Toxoplasma gondii wer...

ORGANISM(S): Toxoplasma gondii

2013-08-20 | E-GEOD-44191 | biostudies-arrayexpress

Cooperative binding of DNA sequence non-specific HMGbox Factor Ubf and TBP-TAF complex SL1 determines RNA Polymerase I promoter recognition in vivo and its dysfunction underlies the Ubf-E210K neuroregression syndrome

Transcription of the >200 rRNA genes (rDNA) by RNA Polymerase I (RPI) determines as much as 35% of total nuclear RNA synthesis and is a major determinant of cell growth implicated in a range of hypertrophic and developmental disorders. Activation of the rDNA involves the formation of an extended nuc...

ORGANISM(S): Mus musculus

2022-02-03 | E-MTAB-11385 | biostudies-arrayexpress

Colorectal Cancer (CRC): Investigating the Expression of the Suppressor of Fused (SuFu) Gene and Its Relationship with Several Inflammatory Blood-Based Biomarkers.

Not available

S-EPMC9953361 | biostudies-literature

Resilience and quality of life (QoL) of head and neck cancer and brain tumour survivors in Pakistan: an analytical cross-sectional study protocol.

Not available

S-EPMC6756343 | biostudies-literature

Molecular docking and in vitro anticancer studies of silver(I)-N-heterocyclic carbene complexes.

Not available

S-EPMC9396551 | biostudies-literature

Genetic Diversity of Polymorphic Marker Merozoite Surface Protein 1 (Msp-1) and 2 (Msp-2) Genes of Plasmodium falciparum Isolates From Malaria Endemic Region of Pakistan.